Wall clock time and date at job start Tue Mar 31 2020 09:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86798 * 120.00243 * 2 1 4 4 H 1.48505 * 109.46815 * 86.35744 * 3 2 1 5 5 H 1.48498 * 109.47392 * 206.35585 * 3 2 1 6 6 H 1.48499 * 109.47118 * 326.36018 * 3 2 1 7 7 C 1.40288 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99624 * 9.15289 * 7 2 1 9 9 C 1.40869 * 120.00115 * 189.15205 * 7 2 1 10 10 C 1.40708 * 120.32633 * 37.70715 * 9 7 2 11 11 C 1.37588 * 119.88106 * 180.02562 * 10 9 7 12 12 C 1.38837 * 120.57846 * 0.02562 * 11 10 9 13 13 C 1.38206 * 120.67973 * 359.97438 * 12 11 10 14 14 C 1.39259 * 120.08538 * 359.67116 * 13 12 11 15 15 C 1.47382 * 120.28376 * 180.30436 * 14 13 12 16 16 O 1.21615 * 119.99829 * 175.55640 * 15 14 13 17 17 N 1.34774 * 120.00046 * 355.56153 * 15 14 13 18 18 C 1.39280 * 120.00093 * 185.06062 * 17 15 14 19 19 C 1.39075 * 119.68764 * 185.59135 * 18 17 15 20 20 C 1.38274 * 118.92411 * 179.78908 * 19 18 17 21 21 C 1.38952 * 118.66496 * 0.47471 * 20 19 18 22 22 C 1.38081 * 119.47179 * 359.75865 * 21 20 19 23 23 N 1.32192 * 119.68284 * 5.86773 * 18 17 15 24 24 C 1.51495 * 109.60182 * 180.02562 * 22 21 20 25 25 C 1.54329 * 105.21064 * 342.77406 * 24 22 21 26 26 C 1.51251 * 130.57257 * 179.73820 * 21 20 19 27 27 H 0.97001 * 120.00223 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.06181 * 359.97438 * 10 9 7 29 29 H 1.07997 * 119.71398 * 179.97438 * 11 10 9 30 30 H 1.07996 * 119.66511 * 179.97438 * 12 11 10 31 31 H 1.08000 * 119.95963 * 180.02562 * 13 12 11 32 32 H 0.97002 * 120.00092 * 5.05577 * 17 15 14 33 33 H 1.08000 * 120.53702 * 0.03196 * 19 18 17 34 34 H 1.08004 * 120.67098 * 180.24377 * 20 19 18 35 35 H 1.09003 * 110.29609 * 101.71267 * 24 22 21 36 36 H 1.09003 * 110.29212 * 223.83829 * 24 22 21 37 37 H 1.09004 * 110.82545 * 268.13502 * 25 24 22 38 38 H 1.08999 * 110.99580 * 144.65372 * 25 24 22 39 39 H 1.09003 * 110.31172 * 316.06953 * 26 21 20 40 40 H 1.09001 * 110.31688 * 78.14667 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4107 2.0908 1.3973 5 1 3.5742 1.4191 -0.6215 6 1 1.4784 2.6292 -0.7756 7 6 2.0076 -1.2150 -0.0005 8 1 1.4778 -2.1442 -0.1497 9 6 3.4029 -1.2229 0.1935 10 6 3.9990 -0.3285 1.1016 11 6 5.3627 -0.3438 1.2835 12 6 6.1595 -1.2352 0.5778 13 6 5.5988 -2.1239 -0.3200 14 6 4.2208 -2.1376 -0.5205 15 6 3.6176 -3.0880 -1.4718 16 8 2.4083 -3.1514 -1.5837 17 7 4.4062 -3.8868 -2.2178 18 6 3.8431 -4.7089 -3.1909 19 6 4.6458 -5.6147 -3.8761 20 6 4.0695 -6.4261 -4.8359 21 6 2.7089 -6.2985 -5.0871 22 6 1.9701 -5.3752 -4.3742 23 7 2.5518 -4.6168 -3.4584 24 6 0.5244 -5.4245 -4.8241 25 6 0.5475 -6.1587 -6.1813 26 6 1.8159 -7.0306 -6.0640 27 1 -0.4850 0.8400 0.0004 28 1 3.3873 0.3693 1.6541 29 1 5.8174 0.3442 1.9809 30 1 7.2284 -1.2342 0.7318 31 1 6.2296 -2.8125 -0.8625 32 1 5.3659 -3.8893 -2.0769 33 1 5.7014 -5.6858 -3.6591 34 1 4.6657 -7.1422 -5.3821 35 1 -0.0770 -5.9795 -4.1040 36 1 0.1320 -4.4149 -4.9470 37 1 0.6393 -5.4496 -7.0041 38 1 -0.3397 -6.7799 -6.3045 39 1 2.3065 -7.1171 -7.0335 40 1 1.5636 -8.0186 -5.6789 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362693607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:12 Heat of formation + Delta-G solvation = 34.545504 kcal Electronic energy + Delta-G solvation = -24320.642491 eV Core-core repulsion = 20872.185353 eV Total energy + Delta-G solvation = -3448.457138 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.127 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66073 -39.06122 -37.30979 -35.95155 -33.92348 -33.29583 -32.38131 -30.50794 -30.24661 -28.29066 -27.47420 -25.46642 -23.71211 -22.37784 -21.73181 -20.85481 -20.74457 -19.56687 -17.79795 -17.10283 -16.60468 -15.98247 -15.66892 -15.27160 -14.87574 -14.43021 -14.19386 -14.13237 -13.85143 -13.35031 -13.07959 -12.86355 -12.80745 -12.64857 -12.51689 -12.13576 -12.03585 -11.66252 -11.55063 -11.16792 -11.10134 -10.97575 -10.74679 -10.47222 -10.21916 -9.91418 -9.80629 -9.42255 -9.29899 -9.10426 -8.20366 -7.89235 -7.68924 -7.59378 -6.91127 -4.51460 1.33221 1.57042 2.09617 2.56683 3.07025 3.16428 3.27276 3.40773 3.81689 3.94355 4.21866 4.28369 4.55344 4.61647 4.91907 4.98011 5.11119 5.15848 5.31109 5.34600 5.58027 5.67466 5.69394 5.74448 5.79420 5.83261 5.96484 5.99624 6.10166 6.15635 6.18257 6.32228 6.40418 6.45569 6.64674 6.75422 7.04481 7.13157 7.23099 7.33875 7.53019 7.67591 7.90235 7.97879 8.45030 8.54316 8.61586 8.82241 9.29856 10.05143 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.004274 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.459792 B = 6550.066588 C = 7938.592018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.079 3.921 3 Si 0.905 3.095 4 H -0.268 1.268 5 H -0.241 1.241 6 H -0.288 1.288 7 C -0.399 4.399 8 H 0.123 0.877 9 C 0.117 3.883 10 C -0.220 4.220 11 C -0.066 4.066 12 C -0.251 4.251 13 C -0.043 4.043 14 C -0.249 4.249 15 C 0.545 3.455 16 O -0.457 6.457 17 N -0.670 5.670 18 C 0.386 3.614 19 C -0.225 4.225 20 C -0.036 4.036 21 C -0.206 4.206 22 C 0.159 3.841 23 N -0.470 5.470 24 C -0.072 4.072 25 C -0.118 4.118 26 C -0.068 4.068 27 H 0.287 0.713 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.408 0.592 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.497 -9.510 -9.439 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.164 1.164 6 H -0.215 1.215 7 C -0.425 4.425 8 H 0.141 0.859 9 C 0.112 3.888 10 C -0.239 4.239 11 C -0.085 4.085 12 C -0.271 4.271 13 C -0.062 4.062 14 C -0.254 4.254 15 C 0.337 3.663 16 O -0.326 6.326 17 N -0.318 5.318 18 C 0.153 3.847 19 C -0.249 4.249 20 C -0.062 4.062 21 C -0.210 4.210 22 C 0.019 3.981 23 N -0.184 5.184 24 C -0.110 4.110 25 C -0.156 4.156 26 C -0.105 4.105 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.245 0.755 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.814 -8.731 -8.948 13.397 hybrid contribution 1.546 0.248 -0.216 1.581 sum 6.360 -8.483 -9.164 14.014 Atomic orbital electron populations 1.69561 1.08205 1.30377 1.33094 1.26369 0.94887 1.01601 0.91290 0.86402 0.81490 0.79816 0.79202 1.19367 1.16434 1.21468 1.20184 0.90597 0.96583 1.35183 0.85920 1.17516 0.93212 0.89444 0.88647 1.21150 0.94561 1.04929 1.03226 1.20751 0.93753 0.96727 0.97273 1.20284 0.97869 1.03319 1.05603 1.20769 0.93362 0.96194 0.95891 1.19341 0.92680 1.07357 1.06058 1.18604 0.86805 0.80373 0.80486 1.90844 1.13096 1.64413 1.64291 1.44005 1.11299 1.41284 1.35162 1.18352 0.88664 0.89081 0.88556 1.21332 1.00768 1.00754 1.02054 1.20664 0.93311 0.96851 0.95365 1.21267 0.94669 1.02290 1.02805 1.21701 0.96546 0.90107 0.89738 1.66845 1.09699 1.25028 1.16821 1.20994 0.91090 1.02456 0.96471 1.22298 0.97766 0.98604 0.96929 1.20805 0.94168 0.98146 0.97423 0.90201 0.87719 0.88456 0.88406 0.88775 0.75461 0.84908 0.85307 0.89290 0.89555 0.90880 0.90257 0.91117 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.59 13.92 55.57 0.77 -20.82 16 2 C 0.08 2.13 5.48 -17.29 -0.09 2.04 16 3 Si 0.91 20.76 24.54 -169.99 -4.17 16.59 16 4 H -0.27 -5.81 6.84 56.52 0.39 -5.42 16 5 H -0.24 -5.66 6.63 56.52 0.37 -5.29 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.40 -11.26 8.27 -37.82 -0.31 -11.57 16 8 H 0.12 3.85 6.04 -52.48 -0.32 3.54 16 9 C 0.12 3.00 5.00 -106.54 -0.53 2.47 16 10 C -0.22 -5.16 6.94 -38.89 -0.27 -5.43 16 11 C -0.07 -1.36 10.01 -39.60 -0.40 -1.76 16 12 C -0.25 -4.85 10.03 -39.37 -0.39 -5.25 16 13 C -0.04 -0.85 9.53 -39.21 -0.37 -1.23 16 14 C -0.25 -5.87 5.92 -104.37 -0.62 -6.48 16 15 C 0.54 12.85 7.67 -12.54 -0.10 12.75 16 16 O -0.46 -12.61 11.86 5.26 0.06 -12.54 16 17 N -0.67 -12.53 5.33 -12.46 -0.07 -12.60 16 18 C 0.39 7.13 7.41 -154.95 -1.15 5.99 16 19 C -0.23 -3.15 9.95 -39.26 -0.39 -3.54 16 20 C -0.04 -0.45 10.16 -39.30 -0.40 -0.85 16 21 C -0.21 -2.83 6.16 -104.14 -0.64 -3.47 16 22 C 0.16 2.70 7.31 -82.03 -0.60 2.10 16 23 N -0.47 -9.81 7.91 -8.32 -0.07 -9.88 16 24 C -0.07 -0.99 6.77 -26.80 -0.18 -1.17 16 25 C -0.12 -1.16 7.08 -25.32 -0.18 -1.34 16 26 C -0.07 -0.68 6.77 -26.90 -0.18 -0.86 16 27 H 0.29 7.05 8.29 -40.82 -0.34 6.71 16 28 H 0.11 2.42 5.13 -52.49 -0.27 2.15 16 29 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.09 1.46 6.41 -52.49 -0.34 1.12 16 32 H 0.41 5.99 6.74 -40.82 -0.28 5.71 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -32.83 328.30 -9.93 -42.77 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.60 Total: 9.13 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -6.81 Total: -17.60 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.64 Total: -43.29 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.06 Total: -12.54 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.17 Total: 16.59 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.83 -9.93 -42.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362693607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.313 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds