Wall clock time and date at job start Tue Mar 31 2020 09:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86798 * 120.00243 * 2 1 4 4 H 1.48505 * 109.46815 * 86.35744 * 3 2 1 5 5 H 1.48498 * 109.47392 * 206.35585 * 3 2 1 6 6 H 1.48499 * 109.47118 * 326.36018 * 3 2 1 7 7 C 1.40288 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99624 * 9.15289 * 7 2 1 9 9 C 1.40869 * 120.00115 * 189.15205 * 7 2 1 10 10 C 1.40708 * 120.32633 * 37.70715 * 9 7 2 11 11 C 1.37588 * 119.88106 * 180.02562 * 10 9 7 12 12 C 1.38837 * 120.57846 * 0.02562 * 11 10 9 13 13 C 1.38206 * 120.67973 * 359.97438 * 12 11 10 14 14 C 1.39259 * 120.08538 * 359.67116 * 13 12 11 15 15 C 1.47382 * 120.28376 * 180.30436 * 14 13 12 16 16 O 1.21615 * 119.99829 * 175.55640 * 15 14 13 17 17 N 1.34774 * 120.00046 * 355.56153 * 15 14 13 18 18 C 1.39280 * 120.00093 * 185.06062 * 17 15 14 19 19 C 1.39075 * 119.68764 * 185.59135 * 18 17 15 20 20 C 1.38274 * 118.92411 * 179.78908 * 19 18 17 21 21 C 1.38952 * 118.66496 * 0.47471 * 20 19 18 22 22 C 1.38081 * 119.47179 * 359.75865 * 21 20 19 23 23 N 1.32192 * 119.68284 * 5.86773 * 18 17 15 24 24 C 1.51495 * 109.60182 * 180.02562 * 22 21 20 25 25 C 1.54329 * 105.21064 * 342.77406 * 24 22 21 26 26 C 1.51251 * 130.57257 * 179.73820 * 21 20 19 27 27 H 0.97001 * 120.00223 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.06181 * 359.97438 * 10 9 7 29 29 H 1.07997 * 119.71398 * 179.97438 * 11 10 9 30 30 H 1.07996 * 119.66511 * 179.97438 * 12 11 10 31 31 H 1.08000 * 119.95963 * 180.02562 * 13 12 11 32 32 H 0.97002 * 120.00092 * 5.05577 * 17 15 14 33 33 H 1.08000 * 120.53702 * 0.03196 * 19 18 17 34 34 H 1.08004 * 120.67098 * 180.24377 * 20 19 18 35 35 H 1.09003 * 110.29609 * 101.71267 * 24 22 21 36 36 H 1.09003 * 110.29212 * 223.83829 * 24 22 21 37 37 H 1.09004 * 110.82545 * 268.13502 * 25 24 22 38 38 H 1.08999 * 110.99580 * 144.65372 * 25 24 22 39 39 H 1.09003 * 110.31172 * 316.06953 * 26 21 20 40 40 H 1.09001 * 110.31688 * 78.14667 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4107 2.0908 1.3973 5 1 3.5742 1.4191 -0.6215 6 1 1.4784 2.6292 -0.7756 7 6 2.0076 -1.2150 -0.0005 8 1 1.4778 -2.1442 -0.1497 9 6 3.4029 -1.2229 0.1935 10 6 3.9990 -0.3285 1.1016 11 6 5.3627 -0.3438 1.2835 12 6 6.1595 -1.2352 0.5778 13 6 5.5988 -2.1239 -0.3200 14 6 4.2208 -2.1376 -0.5205 15 6 3.6176 -3.0880 -1.4718 16 8 2.4083 -3.1514 -1.5837 17 7 4.4062 -3.8868 -2.2178 18 6 3.8431 -4.7089 -3.1909 19 6 4.6458 -5.6147 -3.8761 20 6 4.0695 -6.4261 -4.8359 21 6 2.7089 -6.2985 -5.0871 22 6 1.9701 -5.3752 -4.3742 23 7 2.5518 -4.6168 -3.4584 24 6 0.5244 -5.4245 -4.8241 25 6 0.5475 -6.1587 -6.1813 26 6 1.8159 -7.0306 -6.0640 27 1 -0.4850 0.8400 0.0004 28 1 3.3873 0.3693 1.6541 29 1 5.8174 0.3442 1.9809 30 1 7.2284 -1.2342 0.7318 31 1 6.2296 -2.8125 -0.8625 32 1 5.3659 -3.8893 -2.0769 33 1 5.7014 -5.6858 -3.6591 34 1 4.6657 -7.1422 -5.3821 35 1 -0.0770 -5.9795 -4.1040 36 1 0.1320 -4.4149 -4.9470 37 1 0.6393 -5.4496 -7.0041 38 1 -0.3397 -6.7799 -6.3045 39 1 2.3065 -7.1171 -7.0335 40 1 1.5636 -8.0186 -5.6789 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362693607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:11 Heat of formation + Delta-G solvation = 13.262593 kcal Electronic energy + Delta-G solvation = -24321.565388 eV Core-core repulsion = 20872.185353 eV Total energy + Delta-G solvation = -3449.380035 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.127 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.93162 -40.65752 -38.92002 -37.31255 -35.68305 -34.91098 -33.54128 -32.33050 -31.89845 -29.47293 -28.53981 -27.27362 -25.11907 -23.85947 -23.18175 -22.41322 -21.69475 -21.17154 -19.58438 -18.67931 -18.09435 -17.36501 -16.97180 -16.70172 -16.04011 -15.97594 -15.82381 -15.77091 -15.46028 -14.72886 -14.58226 -14.40391 -14.25279 -13.83254 -13.77499 -13.70416 -13.31733 -13.21444 -12.73495 -12.61102 -12.54269 -12.21165 -12.13337 -12.06915 -12.03879 -11.64512 -11.15000 -11.11490 -10.68197 -10.63237 -9.75568 -9.60167 -9.42817 -8.95191 -8.83455 -6.52485 0.04533 0.35414 0.52732 0.81334 1.20452 1.34692 1.43469 2.02502 2.08943 2.21788 2.66292 2.95414 3.12755 3.50130 3.59244 3.91361 4.06212 4.13242 4.15031 4.20419 4.26907 4.29869 4.42192 4.57915 4.67898 4.78876 4.81643 4.86834 4.92050 4.97334 5.01071 5.05527 5.18282 5.26861 5.30420 5.35891 5.41835 5.46828 5.64476 5.81139 5.90036 5.98160 6.23034 6.37751 6.47662 6.71996 6.78233 7.26412 7.64167 8.20450 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.004274 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.459792 B = 6550.066588 C = 7938.592018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.034 3.966 3 Si 0.968 3.032 4 H -0.244 1.244 5 H -0.248 1.248 6 H -0.281 1.281 7 C -0.450 4.450 8 H 0.065 0.935 9 C 0.101 3.899 10 C -0.242 4.242 11 C -0.061 4.061 12 C -0.225 4.225 13 C -0.041 4.041 14 C -0.266 4.266 15 C 0.539 3.461 16 O -0.514 6.514 17 N -0.657 5.657 18 C 0.340 3.660 19 C -0.203 4.203 20 C -0.035 4.035 21 C -0.190 4.190 22 C 0.110 3.890 23 N -0.534 5.534 24 C -0.080 4.080 25 C -0.106 4.106 26 C -0.063 4.063 27 H 0.293 0.707 28 H 0.103 0.897 29 H 0.140 0.860 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.427 0.573 33 H 0.175 0.825 34 H 0.180 0.820 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.986 -10.956 -10.949 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.179 4.179 3 Si 0.790 3.210 4 H -0.168 1.168 5 H -0.171 1.171 6 H -0.208 1.208 7 C -0.479 4.479 8 H 0.083 0.917 9 C 0.097 3.903 10 C -0.261 4.261 11 C -0.079 4.079 12 C -0.244 4.244 13 C -0.059 4.059 14 C -0.271 4.271 15 C 0.331 3.669 16 O -0.387 6.387 17 N -0.306 5.306 18 C 0.109 3.891 19 C -0.226 4.226 20 C -0.060 4.060 21 C -0.194 4.194 22 C -0.028 4.028 23 N -0.249 5.249 24 C -0.118 4.118 25 C -0.144 4.144 26 C -0.100 4.100 27 H 0.103 0.897 28 H 0.121 0.879 29 H 0.158 0.842 30 H 0.167 0.833 31 H 0.161 0.839 32 H 0.268 0.732 33 H 0.192 0.808 34 H 0.197 0.803 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.347 -10.222 -10.481 17.928 hybrid contribution 0.163 0.423 0.180 0.488 sum 10.510 -9.799 -10.301 17.681 Atomic orbital electron populations 1.69630 1.09607 1.31331 1.37135 1.27143 0.95590 1.04524 0.90668 0.85470 0.79495 0.75730 0.80321 1.16833 1.17114 1.20755 1.19898 0.92334 0.95337 1.40343 0.91660 1.17785 0.92486 0.90918 0.89109 1.21248 0.96386 1.05121 1.03351 1.21294 0.92377 0.97038 0.97204 1.20982 1.00297 1.00521 1.02578 1.21261 0.91728 0.96951 0.95979 1.19754 0.94739 1.06715 1.05884 1.18858 0.86509 0.80715 0.80773 1.90845 1.15662 1.66308 1.65902 1.43559 1.11644 1.40657 1.34746 1.18757 0.88970 0.91213 0.90171 1.21758 1.02141 0.98333 1.00385 1.21268 0.93127 0.96870 0.94730 1.21835 0.95515 1.00373 1.01644 1.22233 0.98256 0.91700 0.90637 1.66610 1.11931 1.27439 1.18930 1.21154 0.90005 1.01662 0.99021 1.22316 0.99352 0.98608 0.94092 1.20933 0.93111 0.98161 0.97791 0.89665 0.87946 0.84247 0.83310 0.83890 0.73246 0.80788 0.80304 0.89912 0.92180 0.90301 0.87588 0.88116 0.88674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -51.49 13.92 21.88 0.30 -51.18 16 2 C 0.03 2.01 5.48 85.37 0.47 2.48 16 3 Si 0.97 44.91 24.54 68.60 1.68 46.60 16 4 H -0.24 -10.20 6.84 99.48 0.68 -9.52 16 5 H -0.25 -11.50 6.63 99.48 0.66 -10.84 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.45 -28.11 8.27 23.41 0.19 -27.91 16 8 H 0.07 4.71 6.04 -2.91 -0.02 4.69 16 9 C 0.10 5.44 5.00 -21.11 -0.11 5.33 16 10 C -0.24 -11.23 6.94 22.72 0.16 -11.07 16 11 C -0.06 -2.24 10.01 22.26 0.22 -2.02 16 12 C -0.23 -7.37 10.03 22.41 0.22 -7.15 16 13 C -0.04 -1.45 9.53 22.51 0.21 -1.24 16 14 C -0.27 -12.71 5.92 -19.70 -0.12 -12.83 16 15 C 0.54 26.94 7.67 86.65 0.66 27.61 16 16 O -0.51 -31.55 11.86 -4.08 -0.05 -31.59 16 17 N -0.66 -24.74 5.33 -311.58 -1.66 -26.40 16 18 C 0.34 12.75 7.41 133.02 0.99 13.73 16 19 C -0.20 -5.09 9.95 22.48 0.22 -4.87 16 20 C -0.03 -0.73 10.16 22.45 0.23 -0.51 16 21 C -0.19 -4.83 6.16 -19.56 -0.12 -4.95 16 22 C 0.11 3.93 7.31 42.69 0.31 4.24 16 23 N -0.53 -23.96 7.91 -180.23 -1.43 -25.38 16 24 C -0.08 -2.39 6.77 30.55 0.21 -2.18 16 25 C -0.11 -1.94 7.08 31.51 0.22 -1.71 16 26 C -0.06 -1.03 6.77 30.49 0.21 -0.83 16 27 H 0.29 15.81 8.29 -92.71 -0.77 15.04 16 28 H 0.10 4.72 5.13 -2.91 -0.01 4.71 16 29 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 30 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.14 3.64 6.41 -2.91 -0.02 3.63 16 32 H 0.43 11.58 6.74 -92.71 -0.63 10.96 16 33 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -86.55 328.30 3.43 -83.12 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.39 Total: 28.72 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 4.19 Total: -23.88 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -2.78 Total: -102.97 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.05 Total: -31.59 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.68 Total: 46.60 kcal Total: -86.55 3.43 -83.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362693607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.384 kcal (2) G-P(sol) polarization free energy of solvation -86.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds