Wall clock time and date at job start Tue Mar 31 2020 09:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48492 * 109.47159 * 269.99816 * 3 2 1 5 5 H 1.48504 * 109.47070 * 29.99812 * 3 2 1 6 6 H 1.48502 * 109.47070 * 149.99286 * 3 2 1 7 7 C 1.37879 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99931 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99852 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.50205 * 59.93303 * 9 7 2 11 11 C 1.53038 * 109.49925 * 179.97438 * 9 7 2 12 12 C 1.53039 * 109.53989 * 181.34662 * 11 9 7 13 13 C 1.53192 * 109.31088 * 298.63206 * 12 11 9 14 14 N 1.46927 * 108.77417 * 54.63816 * 13 12 11 15 15 C 1.34778 * 120.62858 * 126.36702 * 14 13 12 16 16 O 1.21602 * 119.99451 * 187.33652 * 15 14 13 17 17 C 1.47520 * 120.00497 * 7.33224 * 15 14 13 18 18 C 1.36593 * 125.77315 * 187.33692 * 17 15 14 19 19 N 1.34812 * 106.84168 * 180.02562 * 18 17 15 20 20 C 1.46503 * 126.59675 * 180.02562 * 19 18 17 21 21 C 1.50698 * 109.47227 * 124.99870 * 20 19 18 22 22 O 1.20829 * 119.99960 * 359.97438 * 21 20 19 23 23 O 1.34227 * 119.99986 * 180.02562 * 21 20 19 24 24 N 1.40217 * 106.80909 * 0.26000 * 19 18 17 25 25 N 1.28761 * 108.36402 * 359.55482 * 24 19 18 26 26 C 1.46928 * 118.73872 * 306.64009 * 14 13 12 27 27 H 0.97004 * 119.99668 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46036 * 61.32400 * 11 9 7 29 29 H 1.08999 * 109.46100 * 301.36752 * 11 9 7 30 30 H 1.09004 * 109.49629 * 178.68659 * 12 11 9 31 31 H 1.08995 * 109.49910 * 58.58792 * 12 11 9 32 32 H 1.08992 * 109.59122 * 294.85024 * 13 12 11 33 33 H 1.09000 * 109.58439 * 174.42276 * 13 12 11 34 34 H 1.07998 * 126.57946 * 0.02562 * 18 17 15 35 35 H 1.08995 * 109.46664 * 4.99523 * 20 19 18 36 36 H 1.09003 * 109.46740 * 245.00104 * 20 19 18 37 37 H 0.96701 * 117.00233 * 179.97438 * 23 21 20 38 38 H 1.08998 * 109.58402 * 173.14627 * 26 14 13 39 39 H 1.08999 * 109.58070 * 293.57117 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8750 -0.6792 0.8903 11 6 4.0222 -2.6368 0.0023 12 6 5.5522 -2.6380 0.0368 13 6 6.0878 -1.9366 -1.2154 14 7 5.4872 -0.5984 -1.3011 15 6 6.2640 0.4963 -1.4226 16 8 5.7672 1.6044 -1.3586 17 6 7.7168 0.3504 -1.6332 18 6 8.6299 1.3662 -1.6309 19 7 9.8356 0.8080 -1.8594 20 6 11.1200 1.5077 -1.9445 21 6 12.0899 0.8983 -0.9652 22 8 11.7436 -0.0253 -0.2673 23 8 13.3380 1.3823 -0.8674 24 7 9.6233 -0.5703 -2.0052 25 7 8.3655 -0.8045 -1.8602 26 6 4.0241 -0.4758 -1.2458 27 1 -0.4850 0.8401 -0.0004 28 1 3.6789 -3.1443 -0.8993 29 1 3.6388 -3.1571 0.8800 30 1 5.9148 -3.6657 0.0611 31 1 5.8966 -2.1091 0.9254 32 1 5.8208 -2.5142 -2.1003 33 1 7.1720 -1.8469 -1.1485 34 1 8.4253 2.4152 -1.4758 35 1 10.9762 2.5614 -1.7056 36 1 11.5178 1.4152 -2.9551 37 1 13.9239 0.9592 -0.2249 38 1 3.7472 0.5774 -1.1989 39 1 3.5855 -0.9320 -2.1332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480365.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:21 Heat of formation + Delta-G solvation = -2.348506 kcal Electronic energy + Delta-G solvation = -25560.032300 eV Core-core repulsion = 21699.126054 eV Total energy + Delta-G solvation = -3860.906246 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.51030 -40.77180 -39.42267 -36.90943 -36.84311 -35.11752 -33.31681 -31.88131 -31.21075 -30.47659 -29.33795 -25.36839 -25.11172 -23.78942 -22.75267 -22.00168 -21.69198 -20.06224 -18.89879 -18.84760 -17.71174 -17.26080 -16.79400 -16.65389 -16.30037 -15.77837 -15.59543 -14.94230 -14.53391 -14.10089 -13.90682 -13.84581 -13.65472 -13.50696 -12.98986 -12.78481 -12.50141 -12.29265 -12.16381 -12.03302 -11.71057 -11.47365 -10.99808 -10.87980 -10.71511 -10.43544 -10.19935 -9.97452 -9.75149 -9.62552 -9.42831 -9.09926 -9.02073 -8.55203 -7.98972 -6.05544 -4.06711 0.81311 1.42452 1.46207 1.69528 2.31117 3.33587 3.41609 3.49244 3.50822 3.62228 3.84335 4.03538 4.22672 4.40515 4.47309 4.55643 4.79343 4.99240 5.26310 5.29704 5.56274 5.62665 5.77954 5.79845 5.93901 6.09907 6.21375 6.27510 6.38699 6.55011 6.62423 6.75973 6.85088 6.97002 7.15770 7.23132 7.51387 7.71101 7.77859 7.92594 8.46139 8.56989 8.98044 9.56204 11.06456 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.025530 B = 0.003594 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.473222 B = 7788.803150 C = 8456.997451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.261 1.261 7 C -0.514 4.514 8 H 0.078 0.922 9 C 0.004 3.996 10 H 0.030 0.970 11 C -0.101 4.101 12 C -0.136 4.136 13 C 0.088 3.912 14 N -0.588 5.588 15 C 0.590 3.410 16 O -0.545 6.545 17 C -0.081 4.081 18 C 0.094 3.906 19 N -0.368 5.368 20 C 0.138 3.862 21 C 0.465 3.535 22 O -0.481 6.481 23 O -0.512 6.512 24 N -0.044 5.044 25 N -0.197 5.197 26 C 0.103 3.897 27 H 0.264 0.736 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.209 0.791 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.421 0.579 38 H 0.079 0.921 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.225 3.953 -4.761 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.185 1.185 7 C -0.552 4.552 8 H 0.096 0.904 9 C -0.015 4.015 10 H 0.048 0.952 11 C -0.139 4.139 12 C -0.174 4.174 13 C -0.036 4.036 14 N -0.318 5.318 15 C 0.375 3.625 16 O -0.423 6.423 17 C -0.218 4.218 18 C -0.060 4.060 19 N -0.156 5.156 20 C 0.014 3.986 21 C 0.304 3.696 22 O -0.365 6.365 23 O -0.325 6.325 24 N -0.023 5.023 25 N -0.071 5.071 26 C -0.017 4.017 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.225 0.775 35 H 0.166 0.834 36 H 0.160 0.840 37 H 0.281 0.719 38 H 0.097 0.903 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 27.111 3.231 -5.065 27.769 hybrid contribution 0.462 1.647 0.582 1.807 sum 27.573 4.878 -4.484 28.358 Atomic orbital electron populations 1.69902 1.06280 1.27075 1.50257 1.25057 0.94765 0.99136 0.94137 0.86980 0.79800 0.83370 0.78956 1.19980 1.22399 1.18543 1.20969 0.88202 0.94629 1.51409 0.90436 1.19411 0.96766 0.92414 0.92953 0.95154 1.21457 0.92339 0.98623 1.01451 1.21987 0.98151 0.99634 0.97624 1.22429 1.00532 0.82349 0.98243 1.48238 1.08155 1.06143 1.69255 1.16867 0.82983 0.84915 0.77705 1.90800 1.73701 1.25032 1.52744 1.21677 0.96755 0.88898 1.14515 1.23341 0.83376 1.01465 0.97815 1.49839 1.06278 1.08630 1.50810 1.21111 0.79228 0.97204 1.01040 1.23006 0.82132 0.81653 0.82856 1.90890 1.77380 1.26621 1.41615 1.84432 1.23590 1.62194 1.62278 1.82113 1.10289 0.89501 1.20404 1.74522 0.99218 1.23032 1.10339 1.22582 0.75248 1.02485 1.01417 0.92579 0.92496 0.92339 0.91611 0.92348 0.91639 0.86584 0.77460 0.83388 0.84032 0.71893 0.90335 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 2 C 0.07 2.10 5.45 -17.82 -0.10 2.01 16 3 Si 0.88 23.39 24.32 -169.99 -4.13 19.26 16 4 H -0.27 -7.26 6.92 56.52 0.39 -6.87 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 6 H -0.26 -6.96 6.53 56.52 0.37 -6.59 16 7 C -0.51 -14.54 9.15 -34.44 -0.32 -14.85 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C 0.00 0.10 1.83 -91.88 -0.17 -0.07 16 10 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 11 C -0.10 -2.02 5.11 -26.69 -0.14 -2.16 16 12 C -0.14 -2.30 6.08 -26.61 -0.16 -2.46 16 13 C 0.09 1.49 6.08 -3.71 -0.02 1.47 16 14 N -0.59 -11.83 2.98 -174.26 -0.52 -12.34 16 15 C 0.59 11.53 7.67 -12.48 -0.10 11.44 16 16 O -0.55 -12.11 16.30 5.28 0.09 -12.02 16 17 C -0.08 -1.25 6.69 -83.55 -0.56 -1.81 16 18 C 0.09 1.04 11.28 -16.84 -0.19 0.85 16 19 N -0.37 -3.59 3.40 -62.24 -0.21 -3.80 16 20 C 0.14 0.58 7.13 -5.19 -0.04 0.55 16 21 C 0.47 3.02 8.36 36.00 0.30 3.32 16 22 O -0.48 -5.58 16.50 -18.75 -0.31 -5.89 16 23 O -0.51 -1.76 13.42 -39.25 -0.53 -2.28 16 24 N -0.04 -0.59 12.90 60.35 0.78 0.18 16 25 N -0.20 -3.02 8.80 32.84 0.29 -2.73 16 26 C 0.10 2.39 5.10 -3.93 -0.02 2.37 16 27 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 28 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.12 1.89 4.14 -76.26 -0.32 1.58 16 34 H 0.21 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.15 0.04 8.08 -51.93 -0.42 -0.38 16 36 H 0.14 0.22 8.14 -51.93 -0.42 -0.21 16 37 H 0.42 0.04 9.10 45.56 0.41 0.45 16 38 H 0.08 2.01 2.31 -51.93 -0.12 1.89 16 39 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -39.34 325.26 -4.17 -43.50 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -3.79 Total: -2.39 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.50 Total: 0.64 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 1.11 Total: -45.72 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.75 Total: -20.20 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.13 Total: 19.26 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -39.34 -4.17 -43.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480365.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.153 kcal (2) G-P(sol) polarization free energy of solvation -39.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds