Wall clock time and date at job start Tue Mar 31 2020 09:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99869 * 2 1 4 4 H 1.48506 * 109.46842 * 269.99655 * 3 2 1 5 5 H 1.48499 * 109.47531 * 29.99573 * 3 2 1 6 6 H 1.48498 * 109.47190 * 150.00030 * 3 2 1 7 7 C 1.37870 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99953 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.52689 * 299.91669 * 9 7 2 11 11 C 1.53046 * 109.49711 * 179.83699 * 9 7 2 12 12 C 1.53070 * 109.65837 * 178.75072 * 11 9 7 13 13 C 1.53197 * 109.29643 * 61.15026 * 12 11 9 14 14 N 1.46922 * 108.89370 * 305.58252 * 13 12 11 15 15 C 1.34782 * 120.62778 * 233.55316 * 14 13 12 16 16 O 1.21596 * 119.99391 * 172.68754 * 15 14 13 17 17 C 1.47521 * 120.00047 * 352.69815 * 15 14 13 18 18 C 1.36590 * 125.77054 * 172.66213 * 17 15 14 19 19 N 1.34807 * 106.84178 * 179.89466 * 18 17 15 20 20 C 1.46501 * 126.60145 * 180.10976 * 19 18 17 21 21 C 1.50696 * 109.47693 * 125.27240 * 20 19 18 22 22 O 1.20833 * 119.99737 * 0.02562 * 21 20 19 23 23 O 1.34223 * 120.00264 * 180.02562 * 21 20 19 24 24 N 1.40212 * 106.81168 * 0.36001 * 19 18 17 25 25 N 1.28758 * 108.36203 * 359.76926 * 24 19 18 26 26 C 1.46925 * 118.74209 * 53.53459 * 14 13 12 27 27 H 0.97003 * 120.00308 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.45864 * 298.70782 * 11 9 7 29 29 H 1.09000 * 109.45792 * 58.67971 * 11 9 7 30 30 H 1.09004 * 109.39174 * 301.27980 * 12 11 9 31 31 H 1.09001 * 109.62572 * 181.17353 * 12 11 9 32 32 H 1.08996 * 109.58589 * 185.71739 * 13 12 11 33 33 H 1.09002 * 109.58280 * 65.43981 * 13 12 11 34 34 H 1.08005 * 126.57934 * 0.03523 * 18 17 15 35 35 H 1.09003 * 109.47412 * 245.27627 * 20 19 18 36 36 H 1.09009 * 109.46600 * 5.27124 * 20 19 18 37 37 H 0.96699 * 117.00257 * 179.97438 * 23 21 20 38 38 H 1.08996 * 109.58771 * 66.17655 * 26 14 13 39 39 H 1.09001 * 109.58760 * 186.60398 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5583 0.8907 11 6 2.2451 -3.6628 -0.0029 12 6 1.4838 -4.9904 0.0285 13 6 0.6033 -5.0988 -1.2205 14 7 -0.2554 -3.9094 -1.3018 15 6 -1.5921 -4.0344 -1.4209 16 8 -2.3031 -3.0502 -1.3537 17 6 -2.1926 -5.3651 -1.6325 18 6 -3.5289 -5.6480 -1.6281 19 7 -3.6489 -6.9705 -1.8604 20 6 -4.8973 -7.7322 -1.9478 21 6 -4.9421 -8.4748 -3.2583 22 8 -4.0250 -8.3780 -4.0391 23 8 -6.0007 -9.2436 -3.5583 24 7 -2.3490 -7.4780 -1.9965 25 7 -1.5171 -6.5052 -1.8566 26 6 0.3706 -2.5812 -1.2504 27 1 -0.4851 0.8400 -0.0004 28 1 2.8544 -3.6172 -0.9056 29 1 2.8889 -3.5930 0.8738 30 1 0.8571 -5.0273 0.9196 31 1 2.1924 -5.8184 0.0470 32 1 -0.0163 -5.9930 -1.1542 33 1 1.2335 -5.1559 -2.1080 34 1 -4.3348 -4.9463 -1.4712 35 1 -4.9465 -8.4449 -1.1245 36 1 -5.7447 -7.0490 -1.8880 37 1 -5.9844 -9.7000 -4.4106 38 1 0.9836 -2.4315 -2.1392 39 1 -0.4026 -1.8143 -1.2040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480366.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:23 Heat of formation + Delta-G solvation = -9.883085 kcal Electronic energy + Delta-G solvation = -25338.621647 eV Core-core repulsion = 21477.388677 eV Total energy + Delta-G solvation = -3861.232970 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.34243 -40.68185 -39.04570 -36.77498 -36.56768 -34.96899 -33.25036 -31.68600 -30.99101 -29.86058 -29.06751 -25.20719 -24.86509 -23.67723 -22.57953 -21.81042 -21.51703 -19.98851 -18.78915 -18.65379 -17.52948 -17.11171 -16.69395 -16.27751 -15.92079 -15.53965 -15.30385 -14.67417 -14.33895 -14.20782 -13.76521 -13.67315 -13.51130 -13.12233 -12.78507 -12.53817 -12.15891 -12.10885 -11.98893 -11.86544 -11.46684 -11.29421 -10.93011 -10.67131 -10.57383 -10.40373 -10.19156 -9.94187 -9.71265 -9.42602 -9.23874 -9.02265 -8.81292 -8.37843 -7.63762 -5.94142 -4.02577 0.97079 1.54097 1.56672 1.90436 2.41295 3.34398 3.41558 3.44210 3.65418 3.78146 3.98621 4.21451 4.32853 4.47486 4.50043 4.77368 4.98932 5.15148 5.35669 5.50178 5.75284 5.79981 5.87375 5.99500 6.09800 6.32115 6.45293 6.57546 6.75832 6.80511 6.97748 7.08270 7.23132 7.23791 7.37980 7.69880 7.91059 7.95100 8.06173 8.33286 8.45070 8.85393 9.01759 9.62534 11.11001 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.030886 B = 0.003085 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.340202 B = 9072.651420 C = 9693.916754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.132 4.132 13 C 0.087 3.913 14 N -0.586 5.586 15 C 0.587 3.413 16 O -0.535 6.535 17 C -0.078 4.078 18 C 0.090 3.910 19 N -0.370 5.370 20 C 0.138 3.862 21 C 0.465 3.535 22 O -0.481 6.481 23 O -0.513 6.513 24 N -0.048 5.048 25 N -0.198 5.198 26 C 0.112 3.888 27 H 0.263 0.737 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.058 0.942 34 H 0.208 0.792 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.420 0.580 38 H 0.044 0.956 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.011 -18.203 -3.867 22.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.149 4.149 12 C -0.170 4.170 13 C -0.037 4.037 14 N -0.317 5.317 15 C 0.371 3.629 16 O -0.412 6.412 17 C -0.215 4.215 18 C -0.063 4.063 19 N -0.157 5.157 20 C 0.015 3.985 21 C 0.303 3.697 22 O -0.365 6.365 23 O -0.325 6.325 24 N -0.027 5.027 25 N -0.073 5.073 26 C -0.008 4.008 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.131 0.869 33 H 0.077 0.923 34 H 0.225 0.775 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.280 0.720 38 H 0.063 0.937 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.473 -18.561 -3.945 22.708 hybrid contribution -0.191 1.300 -0.485 1.400 sum -12.664 -17.261 -4.431 21.862 Atomic orbital electron populations 1.69895 1.05683 1.26710 1.49525 1.25053 0.94890 0.99191 0.94933 0.86600 0.79812 0.83545 0.78075 1.20684 1.21257 1.19973 1.21096 0.92925 0.90140 1.51583 0.92367 1.18961 0.92642 0.92283 0.93963 0.95253 1.21651 0.98565 0.94272 1.00440 1.21944 0.98565 0.98764 0.97761 1.22346 0.94314 0.89272 0.97786 1.48310 1.04720 1.09607 1.69032 1.16835 0.82886 0.84958 0.78204 1.90824 1.60709 1.37542 1.52102 1.21902 0.90773 0.95156 1.13704 1.23350 0.99789 0.84878 0.98333 1.49823 1.07989 1.07020 1.50916 1.21087 0.84534 0.97726 0.95177 1.23045 0.79955 0.77925 0.88729 1.90888 1.36519 1.59776 1.49356 1.84435 1.44273 1.59125 1.44709 1.82090 0.82177 1.18115 1.20368 1.74526 1.24643 0.97858 1.10242 1.22356 0.98721 0.80961 0.98746 0.92724 0.93235 0.93181 0.92517 0.92249 0.86924 0.92322 0.77506 0.84138 0.83441 0.72001 0.93728 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.76 11.39 55.43 0.63 -25.13 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.28 8.56 -34.44 -0.29 -14.58 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.04 1.03 2.26 -91.64 -0.21 0.83 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.11 -2.35 5.10 -26.67 -0.14 -2.48 16 12 C -0.13 -2.38 6.09 -26.59 -0.16 -2.54 16 13 C 0.09 1.60 6.08 -3.71 -0.02 1.57 16 14 N -0.59 -12.65 2.97 -174.00 -0.52 -13.17 16 15 C 0.59 12.32 7.67 -12.47 -0.10 12.23 16 16 O -0.54 -12.79 16.30 5.28 0.09 -12.71 16 17 C -0.08 -1.30 6.69 -83.55 -0.56 -1.86 16 18 C 0.09 1.10 11.28 -16.84 -0.19 0.91 16 19 N -0.37 -3.98 3.41 -62.24 -0.21 -4.19 16 20 C 0.14 0.70 7.13 -5.19 -0.04 0.67 16 21 C 0.46 3.35 8.36 36.00 0.30 3.65 16 22 O -0.48 -5.94 16.49 -18.76 -0.31 -6.25 16 23 O -0.51 -2.06 13.42 -39.24 -0.53 -2.59 16 24 N -0.05 -0.71 12.89 60.35 0.78 0.07 16 25 N -0.20 -3.29 8.79 32.84 0.29 -3.00 16 26 C 0.11 2.80 5.41 -3.71 -0.02 2.78 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.11 1.96 4.12 -77.87 -0.32 1.64 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.21 1.80 8.06 -52.48 -0.42 1.37 16 35 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.15 0.16 8.08 -51.92 -0.42 -0.26 16 37 H 0.42 0.26 9.10 45.56 0.41 0.68 16 38 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.12 3.51 5.11 -51.93 -0.27 3.24 16 LS Contribution 332.14 15.07 5.01 5.01 Total: -1.00 -37.55 332.14 -5.25 -42.81 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -3.94 Total: -0.07 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.52 Total: 2.80 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.97 Total: -45.42 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.75 Total: -21.55 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -37.55 -5.25 -42.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480366.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.925 kcal (2) G-P(sol) polarization free energy of solvation -37.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds