Wall clock time and date at job start Tue Mar 31 2020 09:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99869 * 2 1 4 4 H 1.48506 * 109.46842 * 269.99655 * 3 2 1 5 5 H 1.48499 * 109.47531 * 29.99573 * 3 2 1 6 6 H 1.48498 * 109.47190 * 150.00030 * 3 2 1 7 7 C 1.37870 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99953 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.52689 * 299.91669 * 9 7 2 11 11 C 1.53046 * 109.49711 * 179.83699 * 9 7 2 12 12 C 1.53070 * 109.65837 * 178.75072 * 11 9 7 13 13 C 1.53197 * 109.29643 * 61.15026 * 12 11 9 14 14 N 1.46922 * 108.89370 * 305.58252 * 13 12 11 15 15 C 1.34782 * 120.62778 * 233.55316 * 14 13 12 16 16 O 1.21596 * 119.99391 * 172.68754 * 15 14 13 17 17 C 1.47521 * 120.00047 * 352.69815 * 15 14 13 18 18 C 1.36590 * 125.77054 * 172.66213 * 17 15 14 19 19 N 1.34807 * 106.84178 * 179.89466 * 18 17 15 20 20 C 1.46501 * 126.60145 * 180.10976 * 19 18 17 21 21 C 1.50696 * 109.47693 * 125.27240 * 20 19 18 22 22 O 1.20833 * 119.99737 * 0.02562 * 21 20 19 23 23 O 1.34223 * 120.00264 * 180.02562 * 21 20 19 24 24 N 1.40212 * 106.81168 * 0.36001 * 19 18 17 25 25 N 1.28758 * 108.36203 * 359.76926 * 24 19 18 26 26 C 1.46925 * 118.74209 * 53.53459 * 14 13 12 27 27 H 0.97003 * 120.00308 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.45864 * 298.70782 * 11 9 7 29 29 H 1.09000 * 109.45792 * 58.67971 * 11 9 7 30 30 H 1.09004 * 109.39174 * 301.27980 * 12 11 9 31 31 H 1.09001 * 109.62572 * 181.17353 * 12 11 9 32 32 H 1.08996 * 109.58589 * 185.71739 * 13 12 11 33 33 H 1.09002 * 109.58280 * 65.43981 * 13 12 11 34 34 H 1.08005 * 126.57934 * 0.03523 * 18 17 15 35 35 H 1.09003 * 109.47412 * 245.27627 * 20 19 18 36 36 H 1.09009 * 109.46600 * 5.27124 * 20 19 18 37 37 H 0.96699 * 117.00257 * 179.97438 * 23 21 20 38 38 H 1.08996 * 109.58771 * 66.17655 * 26 14 13 39 39 H 1.09001 * 109.58760 * 186.60398 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5583 0.8907 11 6 2.2451 -3.6628 -0.0029 12 6 1.4838 -4.9904 0.0285 13 6 0.6033 -5.0988 -1.2205 14 7 -0.2554 -3.9094 -1.3018 15 6 -1.5921 -4.0344 -1.4209 16 8 -2.3031 -3.0502 -1.3537 17 6 -2.1926 -5.3651 -1.6325 18 6 -3.5289 -5.6480 -1.6281 19 7 -3.6489 -6.9705 -1.8604 20 6 -4.8973 -7.7322 -1.9478 21 6 -4.9421 -8.4748 -3.2583 22 8 -4.0250 -8.3780 -4.0391 23 8 -6.0007 -9.2436 -3.5583 24 7 -2.3490 -7.4780 -1.9965 25 7 -1.5171 -6.5052 -1.8566 26 6 0.3706 -2.5812 -1.2504 27 1 -0.4851 0.8400 -0.0004 28 1 2.8544 -3.6172 -0.9056 29 1 2.8889 -3.5930 0.8738 30 1 0.8571 -5.0273 0.9196 31 1 2.1924 -5.8184 0.0470 32 1 -0.0163 -5.9930 -1.1542 33 1 1.2335 -5.1559 -2.1080 34 1 -4.3348 -4.9463 -1.4712 35 1 -4.9465 -8.4449 -1.1245 36 1 -5.7447 -7.0490 -1.8880 37 1 -5.9844 -9.7000 -4.4106 38 1 0.9836 -2.4315 -2.1392 39 1 -0.4026 -1.8143 -1.2040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480366.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:22 Heat of formation + Delta-G solvation = -38.895641 kcal Electronic energy + Delta-G solvation = -25339.879725 eV Core-core repulsion = 21477.388677 eV Total energy + Delta-G solvation = -3862.491049 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.39176 -41.28926 -40.65869 -38.30395 -37.28322 -35.91232 -35.14318 -33.44633 -32.15996 -31.48440 -30.03780 -27.10842 -26.52163 -24.53606 -23.95104 -23.35592 -22.45721 -21.49009 -20.18893 -19.29862 -18.77613 -18.18290 -17.88885 -17.37724 -17.13428 -16.72773 -16.68678 -16.41984 -15.72442 -15.64561 -15.17622 -14.90135 -14.54309 -14.35325 -14.22594 -14.08657 -13.85584 -13.51322 -13.20779 -12.87828 -12.84148 -12.64423 -12.42182 -12.26270 -12.13212 -12.05132 -11.67646 -11.51690 -11.29046 -11.20321 -10.94395 -10.63091 -10.48597 -10.39500 -9.38580 -8.07336 -6.24316 0.02589 0.61653 0.82734 1.03751 1.43402 1.43807 1.54736 1.93055 2.14304 2.27884 2.45232 3.10434 3.20309 3.41397 3.71222 3.94196 4.04402 4.07862 4.15963 4.22006 4.29516 4.40024 4.48417 4.64479 4.80913 4.88109 5.08028 5.14483 5.26068 5.28005 5.33959 5.37392 5.52404 5.58400 5.67093 5.91444 6.00539 6.35506 6.58963 6.83343 6.84577 6.87791 7.23492 7.45138 8.96417 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.030886 B = 0.003085 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.340202 B = 9072.651420 C = 9693.916754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.040 3.960 10 H -0.010 1.010 11 C -0.106 4.106 12 C -0.124 4.124 13 C 0.087 3.913 14 N -0.596 5.596 15 C 0.584 3.416 16 O -0.577 6.577 17 C -0.116 4.116 18 C 0.122 3.878 19 N -0.353 5.353 20 C 0.126 3.874 21 C 0.473 3.527 22 O -0.542 6.542 23 O -0.498 6.498 24 N -0.064 5.064 25 N -0.218 5.218 26 C 0.126 3.874 27 H 0.261 0.739 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.066 0.934 34 H 0.245 0.755 35 H 0.178 0.822 36 H 0.199 0.801 37 H 0.435 0.565 38 H 0.036 0.964 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.130 -20.033 -3.751 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.021 3.979 10 H 0.008 0.992 11 C -0.143 4.143 12 C -0.162 4.162 13 C -0.036 4.036 14 N -0.326 5.326 15 C 0.371 3.629 16 O -0.457 6.457 17 C -0.254 4.254 18 C -0.033 4.033 19 N -0.139 5.139 20 C 0.006 3.994 21 C 0.314 3.686 22 O -0.431 6.431 23 O -0.312 6.312 24 N -0.044 5.044 25 N -0.092 5.092 26 C 0.004 3.996 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.147 0.853 33 H 0.084 0.916 34 H 0.261 0.739 35 H 0.195 0.805 36 H 0.216 0.784 37 H 0.298 0.702 38 H 0.055 0.945 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.616 -20.482 -3.834 24.892 hybrid contribution -0.043 1.728 -0.546 1.812 sum -13.660 -18.754 -4.380 23.611 Atomic orbital electron populations 1.70078 1.07288 1.27306 1.50462 1.25882 0.95637 1.02810 0.94549 0.85546 0.78703 0.79099 0.78241 1.20105 1.21095 1.18921 1.21488 0.93256 0.91421 1.51330 0.92081 1.18886 0.93030 0.93686 0.92316 0.99206 1.21543 0.97768 0.94156 1.00854 1.21905 0.98798 0.98243 0.97228 1.22553 0.94317 0.88497 0.98226 1.48318 1.05696 1.09149 1.69432 1.17341 0.82358 0.86394 0.76851 1.90781 1.61477 1.39505 1.53892 1.21393 0.92617 0.93514 1.17830 1.23789 0.98854 0.85667 0.95002 1.50072 1.08549 1.06792 1.48496 1.21872 0.83168 0.99205 0.95150 1.23377 0.79328 0.77246 0.88606 1.90890 1.38783 1.62050 1.51405 1.84408 1.42634 1.58352 1.45815 1.81978 0.83848 1.17809 1.20750 1.74383 1.25882 0.97915 1.11020 1.21806 0.97420 0.82278 0.98113 0.92993 0.92668 0.92772 0.93293 0.88363 0.85344 0.91590 0.73856 0.80497 0.78423 0.70189 0.94518 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.64 11.39 21.44 0.24 -55.39 16 2 C 0.01 0.61 5.30 84.65 0.45 1.06 16 3 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.54 -30.32 8.56 25.60 0.22 -30.10 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.04 2.11 2.26 -11.46 -0.03 2.09 16 10 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 11 C -0.11 -4.44 5.10 30.63 0.16 -4.28 16 12 C -0.12 -4.35 6.09 30.68 0.19 -4.16 16 13 C 0.09 3.17 6.08 86.36 0.52 3.69 16 14 N -0.60 -26.58 2.97 -822.67 -2.45 -29.02 16 15 C 0.58 25.25 7.67 86.69 0.67 25.91 16 16 O -0.58 -28.77 16.30 -4.02 -0.07 -28.83 16 17 C -0.12 -3.82 6.69 40.81 0.27 -3.55 16 18 C 0.12 2.69 11.28 83.85 0.95 3.63 16 19 N -0.35 -6.52 3.41 -350.83 -1.20 -7.71 16 20 C 0.13 0.71 7.13 85.63 0.61 1.32 16 21 C 0.47 5.40 8.36 71.23 0.60 6.00 16 22 O -0.54 -12.68 16.49 21.94 0.36 -12.32 16 23 O -0.50 -2.32 13.42 -51.35 -0.69 -3.01 16 24 N -0.06 -1.78 12.89 37.02 0.48 -1.31 16 25 N -0.22 -7.06 8.79 -50.00 -0.44 -7.50 16 26 C 0.13 6.59 5.41 86.36 0.47 7.06 16 27 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.13 4.41 4.12 -35.95 -0.15 4.26 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.25 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.18 -0.13 8.14 -2.39 -0.02 -0.14 16 36 H 0.20 -0.80 8.08 -2.38 -0.02 -0.81 16 37 H 0.44 -0.63 9.10 -74.06 -0.67 -1.30 16 38 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 5.14 5.11 -2.39 -0.01 5.12 16 Total: -1.00 -88.05 332.14 3.64 -84.42 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.30 Total: 5.21 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.07 Total: 8.68 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -3.36 Total: -100.94 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.39 Total: -44.16 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -88.05 3.64 -84.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480366.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.519 kcal (2) G-P(sol) polarization free energy of solvation -88.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds