Wall clock time and date at job start Tue Mar 31 2020 09:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00191 * 2 1 4 4 H 1.48502 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46729 * 300.00182 * 3 2 1 6 6 H 1.48500 * 109.47075 * 59.99915 * 3 2 1 7 7 C 1.37878 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99877 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00329 * 359.97438 * 7 2 1 10 10 C 1.53038 * 109.46149 * 180.02562 * 9 7 2 11 11 C 1.53195 * 109.30944 * 181.37336 * 10 9 7 12 12 N 1.46927 * 108.77671 * 305.36456 * 11 10 9 13 13 C 1.34773 * 120.62785 * 233.58897 * 12 11 10 14 14 O 1.21592 * 120.00442 * 7.36294 * 13 12 11 15 15 C 1.47522 * 119.99809 * 187.36543 * 13 12 11 16 16 C 1.36601 * 125.77277 * 187.30564 * 15 13 12 17 17 N 1.34812 * 106.83928 * 179.97438 * 16 15 13 18 18 C 1.46496 * 126.59285 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47678 * 124.99432 * 18 17 16 20 20 O 1.20828 * 119.99841 * 359.97438 * 19 18 17 21 21 O 1.34229 * 120.00410 * 179.72531 * 19 18 17 22 22 N 1.40213 * 106.81222 * 0.23669 * 17 16 15 23 23 N 1.28757 * 108.36406 * 359.59040 * 22 17 16 24 24 C 1.46920 * 118.73641 * 53.86071 * 12 11 10 25 25 C 1.53041 * 109.44686 * 300.06657 * 9 7 2 26 26 H 0.97000 * 119.99752 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.45709 * 60.02857 * 9 7 2 28 28 H 1.08998 * 109.49693 * 61.42444 * 10 9 7 29 29 H 1.09003 * 109.49554 * 301.32065 * 10 9 7 30 30 H 1.09006 * 109.58340 * 185.57724 * 11 10 9 31 31 H 1.08995 * 109.70201 * 65.22561 * 11 10 9 32 32 H 1.07997 * 126.57829 * 359.97438 * 16 15 13 33 33 H 1.09004 * 109.47188 * 4.99051 * 18 17 16 34 34 H 1.09004 * 109.46874 * 244.99439 * 18 17 16 35 35 H 0.96692 * 116.99919 * 180.27580 * 21 19 18 36 36 H 1.09004 * 109.58662 * 65.93002 * 24 12 11 37 37 H 1.09004 * 109.58802 * 186.35336 * 24 12 11 38 38 H 1.08998 * 109.49565 * 298.56473 * 25 9 7 39 39 H 1.08997 * 109.49991 * 58.66649 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4766 -4.9866 -0.0352 12 7 0.5223 -5.0087 1.0818 13 6 0.5116 -6.0348 1.9555 14 8 1.3793 -6.8852 1.9054 15 6 -0.5529 -6.1264 2.9727 16 6 -0.6024 -7.0278 3.9979 17 7 -1.7302 -6.7703 4.6901 18 6 -2.2078 -7.4828 5.8778 19 6 -2.4369 -6.4986 6.9958 20 8 -2.2228 -5.3227 6.8189 21 8 -2.8836 -6.9277 8.1867 22 7 -2.3613 -5.6935 4.0513 23 7 -1.6378 -5.3366 3.0478 24 6 -0.4239 -3.8939 1.2246 25 6 0.3706 -2.5793 1.2487 26 1 -0.4850 0.8401 0.0004 27 1 0.6245 -2.5567 -0.8907 28 1 2.8557 -3.6192 0.9018 29 1 2.8881 -3.5915 -0.8783 30 1 2.1751 -5.8175 0.0644 31 1 0.9373 -5.0738 -0.9783 32 1 0.1228 -7.7987 4.2126 33 1 -1.4622 -8.2158 6.1860 34 1 -3.1430 -7.9918 5.6445 35 1 -3.0193 -6.2588 8.8715 36 1 -1.1153 -3.8913 0.3820 37 1 -0.9799 -4.0035 2.1558 38 1 0.9986 -2.5467 2.1390 39 1 -0.3219 -1.7376 1.2604 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:18 Heat of formation + Delta-G solvation = -9.681669 kcal Electronic energy + Delta-G solvation = -25285.162946 eV Core-core repulsion = 21423.938710 eV Total energy + Delta-G solvation = -3861.224236 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.39690 -40.67177 -39.30530 -36.75906 -36.69750 -35.00313 -33.40338 -31.50461 -30.85235 -30.00609 -29.11145 -26.23086 -23.94605 -23.78230 -22.40790 -21.99158 -21.64921 -20.07656 -18.77714 -18.72016 -17.57800 -17.12910 -16.71574 -16.39787 -15.92842 -15.69379 -15.50203 -14.76906 -14.51864 -14.40386 -13.78560 -13.61424 -13.44876 -13.00933 -12.72519 -12.69333 -12.24190 -12.14103 -12.01536 -11.69898 -11.41215 -11.37525 -10.90990 -10.71528 -10.60798 -10.42702 -10.25778 -10.02408 -9.73959 -9.39518 -9.31871 -9.07418 -8.71964 -8.28500 -7.90467 -5.93817 -4.00083 0.91282 1.53124 1.56607 1.80255 2.40696 3.33105 3.39427 3.41358 3.45181 3.54147 3.91807 4.13406 4.30304 4.48088 4.50608 4.65210 4.88080 5.10235 5.35290 5.45160 5.85441 5.89907 6.02041 6.02672 6.08377 6.21602 6.36451 6.55423 6.70973 6.83233 6.97585 7.13279 7.25701 7.27786 7.43517 7.76405 7.84430 8.01662 8.03812 8.16218 8.49791 8.51599 9.03443 9.64473 11.11487 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.003435 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.328648 B = 8149.844218 C = 9270.971558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.122 4.122 11 C 0.112 3.888 12 N -0.580 5.580 13 C 0.595 3.405 14 O -0.559 6.559 15 C -0.082 4.082 16 C 0.092 3.908 17 N -0.370 5.370 18 C 0.138 3.862 19 C 0.463 3.537 20 O -0.477 6.477 21 O -0.513 6.513 22 N -0.043 5.043 23 N -0.189 5.189 24 C 0.081 3.919 25 C -0.121 4.121 26 H 0.259 0.741 27 H 0.028 0.972 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.207 0.793 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.420 0.580 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.035 0.965 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.401 -18.375 13.677 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.028 3.972 10 C -0.161 4.161 11 C -0.010 4.010 12 N -0.310 5.310 13 C 0.381 3.619 14 O -0.439 6.439 15 C -0.219 4.219 16 C -0.062 4.062 17 N -0.157 5.157 18 C 0.015 3.985 19 C 0.301 3.699 20 O -0.362 6.362 21 O -0.326 6.326 22 N -0.022 5.022 23 N -0.063 5.063 24 C -0.041 4.041 25 C -0.160 4.160 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.224 0.776 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.281 0.719 36 H 0.079 0.921 37 H 0.128 0.872 38 H 0.054 0.946 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.186 -17.707 13.325 23.296 hybrid contribution 1.069 0.831 0.669 1.510 sum -6.117 -16.876 13.994 22.760 Atomic orbital electron populations 1.69860 1.05800 1.26259 1.50913 1.24968 0.94854 0.98999 0.95208 0.86581 0.80158 0.84020 0.77495 1.19882 1.21104 1.21117 1.21242 0.92909 0.90624 1.50171 0.92728 1.18671 0.92664 0.91624 0.94221 1.22002 0.98911 0.94173 1.00972 1.21776 0.91684 0.99959 0.87603 1.48090 1.35518 1.20520 1.26838 1.16786 0.82958 0.82074 0.80127 1.90738 1.38176 1.41802 1.73138 1.21594 0.98869 0.99172 1.02287 1.23281 0.89851 1.00619 0.92482 1.49888 1.17683 1.26475 1.21651 1.21088 1.05853 0.91720 0.79850 1.23022 0.74646 0.88883 0.83320 1.90913 1.45483 1.18296 1.81474 1.84422 1.78695 1.46479 1.23029 1.82173 1.17162 0.99014 1.03862 1.74665 1.02874 1.18114 1.10673 1.22869 0.91297 0.86314 1.03617 1.22074 0.99860 0.94956 0.99064 0.93071 0.95440 0.92922 0.92099 0.90237 0.91881 0.77587 0.83505 0.84109 0.71919 0.92088 0.87205 0.94585 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 11.31 55.43 0.63 -24.79 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.12 8.56 -34.44 -0.29 -14.41 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 10 C -0.12 -2.60 5.30 -26.61 -0.14 -2.74 16 11 C 0.11 2.11 6.44 -3.71 -0.02 2.09 16 12 N -0.58 -11.32 2.97 -173.73 -0.52 -11.83 16 13 C 0.60 10.97 7.67 -12.48 -0.10 10.87 16 14 O -0.56 -10.87 16.30 5.28 0.09 -10.78 16 15 C -0.08 -1.30 6.69 -83.55 -0.56 -1.86 16 16 C 0.09 1.03 11.28 -16.83 -0.19 0.84 16 17 N -0.37 -3.88 3.40 -62.24 -0.21 -4.10 16 18 C 0.14 0.67 7.13 -5.20 -0.04 0.64 16 19 C 0.46 3.44 8.36 36.01 0.30 3.74 16 20 O -0.48 -6.20 16.50 -18.75 -0.31 -6.51 16 21 O -0.51 -2.17 13.42 -39.25 -0.53 -2.69 16 22 N -0.04 -0.65 12.91 60.35 0.78 0.13 16 23 N -0.19 -3.23 8.79 32.85 0.29 -2.95 16 24 C 0.08 1.67 6.11 -3.49 -0.02 1.65 16 25 C -0.12 -2.91 5.17 -26.38 -0.14 -3.05 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.21 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.15 0.08 8.08 -51.93 -0.42 -0.34 16 34 H 0.14 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.42 0.42 9.10 45.56 0.41 0.83 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.11 2.22 4.12 -78.24 -0.32 1.90 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.10 2.77 6.03 -51.93 -0.31 2.46 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -37.04 331.98 -5.21 -42.25 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -3.93 Total: -0.57 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.48 Total: 0.32 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.97 Total: -43.54 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.75 Total: -19.99 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -37.04 -5.21 -42.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.568 kcal (2) G-P(sol) polarization free energy of solvation -37.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds