Wall clock time and date at job start Tue Mar 31 2020 10:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47322 * 2 1 4 4 O 1.42901 * 109.47225 * 119.99849 * 2 1 3 5 5 C 1.35956 * 117.00051 * 275.13674 * 4 2 1 6 6 C 1.38658 * 120.06113 * 5.42109 * 5 4 2 7 7 C 1.38182 * 119.96699 * 179.72036 * 6 5 4 8 8 C 1.38258 * 120.09448 * 0.55089 * 7 6 5 9 9 C 1.38251 * 120.12743 * 359.72380 * 8 7 6 10 10 C 1.38335 * 120.03145 * 359.97438 * 9 8 7 11 11 F 1.35102 * 120.04919 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47228 * 239.99752 * 2 1 3 13 13 O 1.21273 * 120.00291 * 244.99978 * 12 2 1 14 14 N 1.34777 * 119.99972 * 65.00225 * 12 2 1 15 15 C 1.46494 * 120.00220 * 180.02562 * 14 12 2 16 16 C 1.53950 * 113.74092 * 253.73919 * 15 14 12 17 17 N 1.47812 * 86.03687 * 222.08359 * 16 15 14 18 18 C 1.36939 * 134.45699 * 204.64623 * 17 16 15 19 19 H 1.07996 * 120.00361 * 179.87029 * 18 17 16 20 20 C 1.38814 * 119.99894 * 359.86285 * 18 17 16 21 21 N 1.31620 * 120.00076 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00101 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47346 * 89.99792 * 22 20 18 24 24 H 1.48503 * 109.46957 * 210.00307 * 22 20 18 25 25 H 1.48500 * 109.46854 * 329.99777 * 22 20 18 26 26 C 1.47577 * 91.05248 * 24.54711 * 17 16 15 27 27 H 1.09001 * 109.47571 * 300.00278 * 1 2 3 28 28 H 1.09007 * 109.46986 * 59.99726 * 1 2 3 29 29 H 1.08999 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.01610 * 359.96843 * 6 5 4 31 31 H 1.08009 * 119.95319 * 180.27060 * 7 6 5 32 32 H 1.08000 * 119.93829 * 179.74135 * 8 7 6 33 33 H 1.08003 * 119.98837 * 179.97438 * 9 8 7 34 34 H 0.97008 * 120.00015 * 359.97438 * 14 12 2 35 35 H 1.08994 * 112.94512 * 25.33015 * 15 14 12 36 36 H 1.08997 * 113.76739 * 336.34858 * 16 15 14 37 37 H 1.08998 * 113.77075 * 107.74158 * 16 15 14 38 38 H 0.96998 * 120.00492 * 179.97438 * 21 20 18 39 39 H 1.08998 * 113.77316 * 221.15425 * 26 17 16 40 40 H 1.09004 * 113.76802 * 89.75125 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1098 0.0622 2.3053 6 6 1.6556 1.3721 2.3294 7 6 1.7565 2.1164 3.4893 8 6 2.3201 1.5606 4.6228 9 6 2.7795 0.2568 4.6015 10 6 2.6754 -0.4951 3.4450 11 9 3.1237 -1.7694 3.4240 12 6 2.0323 -0.7105 -1.2304 13 8 2.6529 -1.7466 -1.1215 14 7 1.7919 -0.1942 -2.4520 15 6 2.2797 -0.8851 -3.6481 16 6 3.4853 -0.1965 -4.3133 17 7 2.8121 -0.4863 -5.5970 18 6 3.2380 -0.6464 -6.8886 19 1 2.5241 -0.8613 -7.6699 20 6 4.5874 -0.5322 -7.1936 21 7 5.4576 -0.2707 -6.2414 22 14 5.1683 -0.7498 -8.9556 23 1 5.1555 0.5643 -9.6469 24 1 6.5489 -1.2968 -8.9576 25 1 4.2624 -1.6902 -9.6629 26 6 1.4978 -0.5365 -4.9276 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.2195 1.8091 1.4433 31 1 1.3986 3.1352 3.5091 32 1 2.4015 2.1459 5.5268 33 1 3.2198 -0.1750 5.4882 34 1 1.2952 0.6344 -2.5392 35 1 2.4155 -1.9557 -3.4948 36 1 3.5628 0.8672 -4.0883 37 1 4.4258 -0.7306 -4.1786 38 1 6.4005 -0.1913 -6.4544 39 1 0.8545 -1.3416 -5.2824 40 1 0.9903 0.4272 -4.8834 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753377458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:06 Heat of formation + Delta-G solvation = -27.948216 kcal Electronic energy + Delta-G solvation = -24648.835193 eV Core-core repulsion = 20766.898898 eV Total energy + Delta-G solvation = -3881.936294 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.88331 -40.72883 -39.41123 -37.95394 -37.14847 -33.79640 -32.42292 -31.52697 -30.96611 -29.82605 -27.50450 -25.13981 -24.87572 -23.65434 -22.88313 -22.33607 -20.25275 -19.68081 -18.82778 -17.46358 -17.16904 -16.83031 -16.35926 -16.19333 -15.86766 -15.46886 -15.13386 -14.93301 -14.67917 -14.37351 -14.12614 -13.82095 -13.41315 -13.19790 -12.81889 -12.66420 -12.59793 -12.25558 -11.97639 -11.88575 -11.55125 -11.50595 -11.39975 -11.24533 -10.92417 -10.81090 -10.49183 -10.07693 -9.61938 -9.53865 -9.24502 -8.84581 -8.55120 -8.46253 -6.96565 -5.80619 -3.15125 0.80348 0.94393 2.46071 2.71672 3.26632 3.37363 3.41738 3.45018 3.53183 3.99239 4.35365 4.40546 4.44054 4.54521 4.62707 4.71278 4.86361 4.90188 5.05728 5.11885 5.29191 5.31728 5.43892 5.51474 5.63747 5.72846 5.76936 5.84897 5.94880 6.04426 6.13899 6.32232 6.33929 6.49095 6.65065 7.00139 7.19035 7.30072 7.51316 7.73257 7.92632 8.39570 8.99047 9.65573 10.50957 11.36007 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.002575 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.502903 B =10871.477604 C =11100.670814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.064 3.936 3 H 0.099 0.901 4 O -0.275 6.275 5 C 0.102 3.898 6 C -0.187 4.187 7 C -0.089 4.089 8 C -0.133 4.133 9 C -0.117 4.117 10 C 0.071 3.929 11 F -0.129 7.129 12 C 0.515 3.485 13 O -0.515 6.515 14 N -0.710 5.710 15 C 0.093 3.907 16 C 0.154 3.846 17 N -0.606 5.606 18 C -0.227 4.227 19 H 0.082 0.918 20 C -0.006 4.006 21 N -0.918 5.918 22 Si 0.915 3.085 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.114 3.886 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.397 0.603 35 H 0.112 0.888 36 H 0.029 0.971 37 H 0.078 0.922 38 H 0.255 0.745 39 H 0.051 0.949 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.521 7.066 21.387 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.004 3.996 3 H 0.117 0.883 4 O -0.188 6.188 5 C 0.055 3.945 6 C -0.206 4.206 7 C -0.107 4.107 8 C -0.151 4.151 9 C -0.136 4.136 10 C 0.051 3.949 11 F -0.108 7.108 12 C 0.298 3.702 13 O -0.389 6.389 14 N -0.362 5.362 15 C -0.012 4.012 16 C 0.027 3.973 17 N -0.333 5.333 18 C -0.355 4.355 19 H 0.100 0.900 20 C -0.203 4.203 21 N -0.564 5.564 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.215 1.215 25 H -0.205 1.205 26 C -0.013 4.013 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.158 0.842 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.159 0.841 34 H 0.230 0.770 35 H 0.130 0.870 36 H 0.047 0.953 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.742 5.994 21.137 24.456 hybrid contribution 0.158 0.513 -1.073 1.199 sum -10.585 6.507 20.064 23.600 Atomic orbital electron populations 1.22337 0.92469 1.04668 1.03806 1.22357 0.95833 0.97212 0.84216 0.88296 1.86308 1.80780 1.36331 1.15335 1.19130 0.97260 0.91398 0.86714 1.21260 1.05628 0.93081 1.00623 1.21023 0.97781 0.99905 0.92040 1.20929 1.00435 0.94584 0.99153 1.21049 1.01161 0.94834 0.96539 1.17046 1.03251 0.81177 0.93431 1.91538 1.86979 1.35317 1.96926 1.19916 0.80503 0.85747 0.84053 1.90765 1.38996 1.23050 1.86135 1.46033 1.57381 1.27352 1.05445 1.23997 0.97860 0.98576 0.80748 1.22725 0.95536 0.96514 0.82499 1.45705 1.01128 1.82422 1.04052 1.18976 0.91776 1.42296 0.82410 0.89992 1.24836 0.95732 1.01753 0.97981 1.69824 1.01646 1.54066 1.30873 0.86080 0.78079 0.77717 0.83621 1.21553 1.21528 1.20512 1.22865 0.90847 0.98044 0.89557 0.90779 0.89873 0.90466 0.84182 0.84979 0.84874 0.84059 0.76960 0.87012 0.95305 0.90406 0.93465 0.93123 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 9.12 37.15 0.34 -1.13 16 2 C 0.06 0.75 2.64 -27.89 -0.07 0.67 16 3 H 0.10 0.90 6.32 -51.93 -0.33 0.57 16 4 O -0.28 -4.02 9.20 -39.46 -0.36 -4.39 16 5 C 0.10 1.24 6.60 -39.18 -0.26 0.98 16 6 C -0.19 -1.64 8.24 -39.45 -0.33 -1.96 16 7 C -0.09 -0.63 10.04 -39.59 -0.40 -1.02 16 8 C -0.13 -0.93 10.04 -39.57 -0.40 -1.33 16 9 C -0.12 -1.03 10.02 -39.54 -0.40 -1.43 16 10 C 0.07 0.87 7.31 -39.30 -0.29 0.58 16 11 F -0.13 -1.89 17.11 2.25 0.04 -1.85 16 12 C 0.51 8.19 7.18 -10.98 -0.08 8.11 16 13 O -0.52 -10.92 16.13 -14.30 -0.23 -11.15 16 14 N -0.71 -10.40 5.33 -55.34 -0.30 -10.69 16 15 C 0.09 1.77 4.40 -70.14 -0.31 1.46 16 16 C 0.15 3.65 7.33 -2.84 -0.02 3.63 16 17 N -0.61 -15.41 3.70 -177.87 -0.66 -16.07 16 18 C -0.23 -6.35 10.70 -15.06 -0.16 -6.51 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 21 N -0.92 -27.47 11.39 55.49 0.63 -26.84 16 22 Si 0.92 22.13 29.55 -169.99 -5.02 17.11 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.11 2.20 8.69 -2.97 -0.03 2.18 16 27 H 0.07 0.50 6.90 -51.93 -0.36 0.14 16 28 H 0.08 0.52 7.92 -51.92 -0.41 0.10 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.14 0.92 5.43 -52.48 -0.28 0.64 16 31 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 32 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.40 4.34 8.49 -40.82 -0.35 3.99 16 35 H 0.11 2.36 7.51 -51.93 -0.39 1.97 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 2.13 7.16 -51.93 -0.37 1.75 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -35.75 344.14 -8.20 -43.94 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.99 Total: 0.77 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -2.49 Total: 3.97 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.32 Total: -53.60 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.59 Total: -15.54 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.75 -8.20 -43.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753377458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.994 kcal (2) G-P(sol) polarization free energy of solvation -35.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds