Wall clock time and date at job start Tue Mar 31 2020 10:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47322 * 2 1 4 4 O 1.42901 * 109.47225 * 119.99849 * 2 1 3 5 5 C 1.35956 * 117.00051 * 275.13674 * 4 2 1 6 6 C 1.38658 * 120.06113 * 5.42109 * 5 4 2 7 7 C 1.38182 * 119.96699 * 179.72036 * 6 5 4 8 8 C 1.38258 * 120.09448 * 0.55089 * 7 6 5 9 9 C 1.38251 * 120.12743 * 359.72380 * 8 7 6 10 10 C 1.38335 * 120.03145 * 359.97438 * 9 8 7 11 11 F 1.35102 * 120.04919 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47228 * 239.99752 * 2 1 3 13 13 O 1.21273 * 120.00291 * 244.99978 * 12 2 1 14 14 N 1.34777 * 119.99972 * 65.00225 * 12 2 1 15 15 C 1.46494 * 120.00220 * 180.02562 * 14 12 2 16 16 C 1.53950 * 113.74092 * 253.73919 * 15 14 12 17 17 N 1.47812 * 86.03687 * 222.08359 * 16 15 14 18 18 C 1.36939 * 134.45699 * 204.64623 * 17 16 15 19 19 H 1.07996 * 120.00361 * 179.87029 * 18 17 16 20 20 C 1.38814 * 119.99894 * 359.86285 * 18 17 16 21 21 N 1.31620 * 120.00076 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00101 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47346 * 89.99792 * 22 20 18 24 24 H 1.48503 * 109.46957 * 210.00307 * 22 20 18 25 25 H 1.48500 * 109.46854 * 329.99777 * 22 20 18 26 26 C 1.47577 * 91.05248 * 24.54711 * 17 16 15 27 27 H 1.09001 * 109.47571 * 300.00278 * 1 2 3 28 28 H 1.09007 * 109.46986 * 59.99726 * 1 2 3 29 29 H 1.08999 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.01610 * 359.96843 * 6 5 4 31 31 H 1.08009 * 119.95319 * 180.27060 * 7 6 5 32 32 H 1.08000 * 119.93829 * 179.74135 * 8 7 6 33 33 H 1.08003 * 119.98837 * 179.97438 * 9 8 7 34 34 H 0.97008 * 120.00015 * 359.97438 * 14 12 2 35 35 H 1.08994 * 112.94512 * 25.33015 * 15 14 12 36 36 H 1.08997 * 113.76739 * 336.34858 * 16 15 14 37 37 H 1.08998 * 113.77075 * 107.74158 * 16 15 14 38 38 H 0.96998 * 120.00492 * 179.97438 * 21 20 18 39 39 H 1.08998 * 113.77316 * 221.15425 * 26 17 16 40 40 H 1.09004 * 113.76802 * 89.75125 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1098 0.0622 2.3053 6 6 1.6556 1.3721 2.3294 7 6 1.7565 2.1164 3.4893 8 6 2.3201 1.5606 4.6228 9 6 2.7795 0.2568 4.6015 10 6 2.6754 -0.4951 3.4450 11 9 3.1237 -1.7694 3.4240 12 6 2.0323 -0.7105 -1.2304 13 8 2.6529 -1.7466 -1.1215 14 7 1.7919 -0.1942 -2.4520 15 6 2.2797 -0.8851 -3.6481 16 6 3.4853 -0.1965 -4.3133 17 7 2.8121 -0.4863 -5.5970 18 6 3.2380 -0.6464 -6.8886 19 1 2.5241 -0.8613 -7.6699 20 6 4.5874 -0.5322 -7.1936 21 7 5.4576 -0.2707 -6.2414 22 14 5.1683 -0.7498 -8.9556 23 1 5.1555 0.5643 -9.6469 24 1 6.5489 -1.2968 -8.9576 25 1 4.2624 -1.6902 -9.6629 26 6 1.4978 -0.5365 -4.9276 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.2195 1.8091 1.4433 31 1 1.3986 3.1352 3.5091 32 1 2.4015 2.1459 5.5268 33 1 3.2198 -0.1750 5.4882 34 1 1.2952 0.6344 -2.5392 35 1 2.4155 -1.9557 -3.4948 36 1 3.5628 0.8672 -4.0883 37 1 4.4258 -0.7306 -4.1786 38 1 6.4005 -0.1913 -6.4544 39 1 0.8545 -1.3416 -5.2824 40 1 0.9903 0.4272 -4.8834 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753377458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:05 Heat of formation + Delta-G solvation = -52.691295 kcal Electronic energy + Delta-G solvation = -24649.908133 eV Core-core repulsion = 20766.898898 eV Total energy + Delta-G solvation = -3883.009235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.83363 -41.72103 -40.63703 -39.29915 -38.24906 -35.32307 -34.04740 -32.78057 -31.62835 -30.55553 -29.39764 -26.65084 -26.18246 -24.94476 -23.84386 -23.30638 -21.52110 -21.31347 -19.65384 -18.79903 -18.50366 -18.04495 -17.45833 -17.18884 -17.05957 -16.95265 -16.37521 -15.95668 -15.76500 -15.51257 -15.40014 -15.33820 -14.60331 -14.25332 -13.98449 -13.70659 -13.52267 -13.35502 -13.23019 -13.20071 -12.92304 -12.85872 -12.65301 -12.60882 -12.32870 -12.15300 -12.00554 -11.93925 -11.55555 -10.91124 -10.87858 -10.05956 -9.91827 -9.23683 -8.99322 -7.93595 -5.29056 0.14250 0.26258 1.42903 1.45441 1.47148 1.50231 1.56385 2.38779 2.53377 2.62559 3.22758 3.26914 3.34041 3.51537 3.69067 3.76852 3.81287 3.90523 3.97832 4.26520 4.29057 4.35294 4.46444 4.49182 4.66961 4.71769 4.73746 4.89308 4.99258 5.08057 5.11478 5.14855 5.21240 5.28066 5.44527 5.46189 5.62998 5.71104 5.87383 6.22324 6.51904 6.86124 7.17742 7.56679 8.48788 9.23172 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.002575 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.502903 B =10871.477604 C =11100.670814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.070 3.930 3 H 0.131 0.869 4 O -0.317 6.317 5 C 0.073 3.927 6 C -0.185 4.185 7 C -0.080 4.080 8 C -0.124 4.124 9 C -0.118 4.118 10 C 0.025 3.975 11 F -0.157 7.157 12 C 0.511 3.489 13 O -0.578 6.578 14 N -0.690 5.690 15 C 0.119 3.881 16 C 0.151 3.849 17 N -0.640 5.640 18 C -0.234 4.234 19 H 0.092 0.908 20 C -0.071 4.071 21 N -0.956 5.956 22 Si 0.983 3.017 23 H -0.282 1.282 24 H -0.298 1.298 25 H -0.265 1.265 26 C 0.126 3.874 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.058 0.942 30 H 0.165 0.835 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.421 0.579 35 H 0.087 0.913 36 H 0.032 0.968 37 H 0.029 0.971 38 H 0.248 0.752 39 H 0.065 0.935 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.221 10.071 22.149 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.011 3.989 3 H 0.149 0.851 4 O -0.231 6.231 5 C 0.027 3.973 6 C -0.203 4.203 7 C -0.098 4.098 8 C -0.142 4.142 9 C -0.137 4.137 10 C 0.005 3.995 11 F -0.136 7.136 12 C 0.297 3.703 13 O -0.456 6.456 14 N -0.344 5.344 15 C 0.013 3.987 16 C 0.024 3.976 17 N -0.367 5.367 18 C -0.362 4.362 19 H 0.110 0.890 20 C -0.264 4.264 21 N -0.605 5.605 22 Si 0.811 3.189 23 H -0.209 1.209 24 H -0.225 1.225 25 H -0.190 1.190 26 C 0.001 3.999 27 H 0.115 0.885 28 H 0.131 0.869 29 H 0.077 0.923 30 H 0.182 0.818 31 H 0.188 0.812 32 H 0.186 0.814 33 H 0.174 0.826 34 H 0.259 0.741 35 H 0.105 0.895 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.526 9.046 21.916 27.297 hybrid contribution 0.950 -0.358 -1.173 1.552 sum -12.576 8.688 20.743 25.767 Atomic orbital electron populations 1.22369 0.89476 1.04329 1.06356 1.22451 0.97802 0.97268 0.81413 0.85141 1.86240 1.81849 1.38315 1.16650 1.19446 0.99076 0.92870 0.85872 1.21586 1.04863 0.91533 1.02364 1.21535 0.96035 1.01204 0.90989 1.21413 0.98547 0.93662 1.00600 1.21352 1.00878 0.95559 0.95862 1.17687 1.05601 0.80875 0.95342 1.91450 1.87692 1.37318 1.97178 1.20822 0.79057 0.85025 0.85434 1.90743 1.41772 1.26026 1.87081 1.45670 1.56893 1.27833 1.03962 1.23219 0.95808 0.97011 0.82707 1.22610 0.95197 0.96306 0.83486 1.46034 1.04154 1.82749 1.03752 1.19437 0.92159 1.40686 0.83901 0.88997 1.25741 0.96105 1.02550 1.02024 1.70041 1.01396 1.56142 1.32882 0.85007 0.77022 0.77895 0.78972 1.20909 1.22487 1.18963 1.23020 0.88943 1.00200 0.87721 0.88474 0.86947 0.92309 0.81764 0.81201 0.81409 0.82575 0.74107 0.89505 0.95072 0.95296 0.94319 0.91632 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 9.12 71.98 0.66 -1.67 16 2 C 0.07 1.54 2.64 29.85 0.08 1.61 16 3 H 0.13 1.97 6.32 -2.39 -0.02 1.96 16 4 O -0.32 -9.47 9.20 -74.07 -0.68 -10.16 16 5 C 0.07 1.75 6.60 22.53 0.15 1.90 16 6 C -0.19 -2.67 8.24 22.36 0.18 -2.49 16 7 C -0.08 -0.77 10.04 22.26 0.22 -0.55 16 8 C -0.12 -1.29 10.04 22.28 0.22 -1.07 16 9 C -0.12 -1.95 10.02 22.30 0.22 -1.72 16 10 C 0.02 0.62 7.31 22.45 0.16 0.78 16 11 F -0.16 -5.04 17.11 44.97 0.77 -4.27 16 12 C 0.51 16.27 7.18 87.66 0.63 16.90 16 13 O -0.58 -25.83 16.13 15.98 0.26 -25.57 16 14 N -0.69 -19.27 5.33 -447.39 -2.39 -21.66 16 15 C 0.12 4.55 4.40 46.75 0.21 4.75 16 16 C 0.15 7.36 7.33 86.44 0.63 8.00 16 17 N -0.64 -32.54 3.70 -716.65 -2.65 -35.19 16 18 C -0.23 -13.06 10.70 84.03 0.90 -12.16 16 19 H 0.09 4.81 7.83 -2.91 -0.02 4.78 16 20 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 21 N -0.96 -59.37 11.39 21.65 0.25 -59.12 16 22 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 C 0.13 4.63 8.69 86.49 0.75 5.38 16 27 H 0.10 0.94 6.90 -2.39 -0.02 0.92 16 28 H 0.11 0.88 7.92 -2.38 -0.02 0.86 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.17 1.42 5.43 -2.91 -0.02 1.40 16 31 H 0.17 0.40 8.06 -2.91 -0.02 0.37 16 32 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 33 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 34 H 0.42 7.75 8.49 -92.70 -0.79 6.96 16 35 H 0.09 3.82 7.51 -2.39 -0.02 3.80 16 36 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.03 1.67 7.16 -2.39 -0.02 1.66 16 38 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.07 2.23 8.11 -2.38 -0.02 2.21 16 Total: -1.00 -85.43 344.14 3.36 -82.07 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.29 Total: 9.73 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 5.49 Total: 16.01 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -4.79 Total: -115.97 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.42 Total: -35.73 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.77 Total: -4.27 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -85.43 3.36 -82.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753377458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.382 kcal (2) G-P(sol) polarization free energy of solvation -85.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds