Wall clock time and date at job start Tue Mar 31 2020 09:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32774 * 123.45777 * 2 1 4 4 S 1.75501 * 110.57609 * 179.97438 * 3 2 1 5 5 C 1.70448 * 92.44278 * 0.02562 * 4 3 2 6 6 C 1.36008 * 110.82053 * 0.02562 * 5 4 3 7 7 C 1.47184 * 123.46169 * 179.97438 * 6 5 4 8 8 O 1.21639 * 119.99836 * 128.78341 * 7 6 5 9 9 N 1.34776 * 119.99841 * 308.78641 * 7 6 5 10 10 C 1.46931 * 120.62621 * 183.79733 * 9 7 6 11 11 C 1.53627 * 108.53998 * 126.37054 * 10 9 7 12 12 C 1.53037 * 109.24752 * 54.85346 * 11 10 9 13 13 N 1.46490 * 109.45192 * 178.49929 * 12 11 10 14 14 C 1.46505 * 120.00298 * 60.05929 * 13 12 11 15 15 C 1.36939 * 119.99903 * 240.06177 * 13 12 11 16 16 H 1.07998 * 120.00298 * 28.90232 * 15 13 12 17 17 C 1.38819 * 119.99974 * 208.89703 * 15 13 12 18 18 N 1.31623 * 119.99963 * 7.84092 * 17 15 13 19 19 Si 1.86793 * 120.00067 * 187.83824 * 17 15 13 20 20 H 1.48497 * 109.47454 * 90.00097 * 19 17 15 21 21 H 1.48500 * 109.47295 * 210.00339 * 19 17 15 22 22 H 1.48506 * 109.47087 * 330.00016 * 19 17 15 23 23 C 1.53045 * 109.53479 * 298.51302 * 12 11 10 24 24 C 1.46923 * 120.63308 * 4.07537 * 9 7 6 25 25 H 1.08998 * 109.46641 * 270.03733 * 1 2 3 26 26 H 1.08999 * 109.47380 * 30.03703 * 1 2 3 27 27 H 1.08997 * 109.46989 * 150.03860 * 1 2 3 28 28 H 1.08002 * 124.70704 * 359.96793 * 3 2 1 29 29 H 1.08004 * 124.58631 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.58620 * 246.19524 * 10 9 7 31 31 H 1.08993 * 109.58855 * 6.62710 * 10 9 7 32 32 H 1.09002 * 109.63210 * 294.85846 * 11 10 9 33 33 H 1.09006 * 109.42958 * 174.72620 * 11 10 9 34 34 H 1.09004 * 109.45807 * 58.52696 * 12 11 10 35 35 H 1.09000 * 109.46607 * 85.33052 * 14 13 12 36 36 H 1.08998 * 109.47457 * 205.32777 * 14 13 12 37 37 H 1.08997 * 109.46798 * 325.33088 * 14 13 12 38 38 H 0.96993 * 119.99583 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.49712 * 301.40798 * 23 12 11 40 40 H 1.09007 * 109.52218 * 181.32895 * 23 12 11 41 41 H 1.09001 * 109.58473 * 353.37706 * 24 9 7 42 42 H 1.09000 * 109.58465 * 113.65844 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2391 1.1077 0.0000 4 16 3.9499 0.7165 0.0007 5 6 3.6411 -0.9598 0.0003 6 6 2.3033 -1.2049 -0.0010 7 6 1.7263 -2.5589 -0.0022 8 8 0.8802 -2.8602 0.8181 9 7 2.1355 -3.4650 -0.9122 10 6 1.5106 -4.7930 -0.9795 11 6 1.0353 -5.0368 -2.4199 12 6 2.2130 -4.8474 -3.3786 13 7 1.7732 -5.1138 -4.7503 14 6 0.7013 -4.3114 -5.3449 15 6 2.3639 -6.1131 -5.4769 16 1 2.7784 -6.9740 -4.9736 17 6 2.4299 -6.0193 -6.8603 18 7 2.0667 -4.9068 -7.4626 19 14 3.0342 -7.4721 -7.8671 20 1 1.8826 -8.3369 -8.2290 21 1 3.6904 -6.9782 -9.1043 22 1 4.0102 -8.2561 -7.0683 23 6 2.7283 -3.4098 -3.2786 24 6 3.2191 -3.1456 -1.8516 25 1 -0.3632 0.0007 1.0277 26 1 -0.3634 0.8896 -0.5144 27 1 -0.3633 -0.8903 -0.5132 28 1 1.8374 2.1103 -0.0005 29 1 4.4045 -1.7238 0.0001 30 1 2.2386 -5.5541 -0.6984 31 1 0.6586 -4.8308 -0.3008 32 1 0.2453 -4.3285 -2.6697 33 1 0.6539 -6.0541 -2.5087 34 1 3.0125 -5.5390 -3.1127 35 1 1.1232 -3.4022 -5.7733 36 1 0.2080 -4.8871 -6.1280 37 1 -0.0245 -4.0478 -4.5756 38 1 2.1125 -4.8415 -8.4293 39 1 1.9225 -2.7169 -3.5203 40 1 3.5519 -3.2685 -3.9786 41 1 3.4947 -2.0961 -1.7484 42 1 4.0843 -3.7733 -1.6385 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985367708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:01 Heat of formation + Delta-G solvation = 20.290351 kcal Electronic energy + Delta-G solvation = -23767.601157 eV Core-core repulsion = 20453.969820 eV Total energy + Delta-G solvation = -3313.631337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.30896 -37.92274 -36.96220 -35.05123 -32.41181 -31.46889 -30.41971 -29.68479 -27.80073 -25.98730 -25.43012 -23.76914 -22.89554 -21.97637 -20.56668 -19.10608 -18.24659 -17.64642 -16.81173 -16.71717 -15.75203 -15.15511 -15.01328 -14.38097 -13.93206 -13.84318 -13.67260 -13.44420 -13.34382 -13.25523 -13.01729 -12.52323 -12.43563 -12.18676 -12.05039 -11.93476 -11.56383 -11.47247 -11.13092 -10.98144 -10.85594 -10.80139 -10.35669 -10.22869 -10.12808 -9.92916 -9.76933 -9.57296 -8.96186 -8.57855 -8.49587 -8.36671 -6.67285 -5.75823 -3.25392 0.72771 1.41722 1.75560 2.03225 2.87114 3.29094 3.36265 3.42826 3.43738 4.46651 4.53609 4.65338 4.99816 5.12121 5.19765 5.27521 5.34494 5.38862 5.46006 5.48254 5.59823 5.61923 5.66944 5.72621 5.81070 5.92108 6.04979 6.10364 6.18469 6.27057 6.29787 6.43123 6.51782 6.65369 6.84580 6.98988 7.02166 7.38019 7.52403 7.70117 7.79450 8.24100 8.43856 9.23822 9.85655 10.38647 11.30326 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.003514 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.052996 B = 7965.272321 C = 8344.595768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.058 4.058 3 C -0.240 4.240 4 S 0.172 5.828 5 C -0.216 4.216 6 C -0.138 4.138 7 C 0.578 3.422 8 O -0.542 6.542 9 N -0.597 5.597 10 C 0.116 3.884 11 C -0.146 4.146 12 C 0.179 3.821 13 N -0.594 5.594 14 C 0.164 3.836 15 C -0.258 4.258 16 H 0.065 0.935 17 C 0.006 3.994 18 N -0.906 5.906 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C -0.143 4.143 24 C 0.099 3.901 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.168 0.832 29 H 0.171 0.829 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.017 0.983 36 H 0.052 0.948 37 H -0.006 1.006 38 H 0.253 0.747 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.408 11.127 14.873 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.069 4.069 3 C -0.374 4.374 4 S 0.440 5.560 5 C -0.353 4.353 6 C -0.156 4.156 7 C 0.364 3.636 8 O -0.420 6.420 9 N -0.329 5.329 10 C -0.007 4.007 11 C -0.186 4.186 12 C 0.070 3.930 13 N -0.315 5.315 14 C 0.019 3.981 15 C -0.387 4.387 16 H 0.083 0.917 17 C -0.192 4.192 18 N -0.550 5.550 19 Si 0.734 3.266 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.183 4.183 24 C -0.025 4.025 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.185 0.815 29 H 0.189 0.811 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.012 0.988 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.303 11.863 15.073 19.464 hybrid contribution -0.784 -1.598 -0.848 1.972 sum 2.518 10.265 14.225 17.722 Atomic orbital electron populations 1.20475 0.88916 1.02869 1.02857 1.19802 0.97269 0.89943 0.99932 1.25248 0.96404 1.02470 1.13316 1.82967 1.05656 0.97036 1.70370 1.25596 0.99416 1.02527 1.07773 1.20139 0.92450 0.94388 1.08624 1.17656 0.81532 0.83528 0.80865 1.90770 1.33138 1.79679 1.38434 1.48081 1.36772 1.14563 1.33456 1.21774 0.98173 0.82229 0.98495 1.22534 1.00624 1.02153 0.93267 1.20314 0.93553 0.93132 0.85967 1.43880 1.39035 1.38741 1.09885 1.20703 0.88376 0.95120 0.93909 1.19198 1.33663 0.97071 0.88802 0.91717 1.25162 0.99961 0.96635 0.97475 1.70034 1.51797 1.24655 1.08511 0.86274 0.78545 0.81985 0.79822 1.21474 1.21706 1.20448 1.22466 1.01729 1.00515 0.93631 1.22115 0.88909 1.01481 0.89945 0.90581 0.91337 0.91133 0.81479 0.81120 0.91580 0.89524 0.91984 0.90844 0.91952 0.96509 0.92958 0.98776 0.93723 0.92187 0.90583 0.89780 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.69 36.01 0.35 -0.69 16 2 C -0.06 -0.70 6.01 -104.06 -0.63 -1.33 16 3 C -0.24 -2.35 10.91 28.86 0.31 -2.04 16 4 S 0.17 1.54 23.02 -107.50 -2.48 -0.93 16 5 C -0.22 -2.35 8.39 29.93 0.25 -2.10 16 6 C -0.14 -1.84 5.05 -104.63 -0.53 -2.37 16 7 C 0.58 9.08 6.77 -12.63 -0.09 9.00 16 8 O -0.54 -9.94 16.10 5.24 0.08 -9.86 16 9 N -0.60 -8.93 2.97 -173.85 -0.52 -9.45 16 10 C 0.12 1.74 6.45 -3.48 -0.02 1.72 16 11 C -0.15 -2.51 5.31 -26.39 -0.14 -2.65 16 12 C 0.18 3.51 2.55 -67.89 -0.17 3.33 16 13 N -0.59 -14.50 2.79 -173.44 -0.48 -14.99 16 14 C 0.16 4.00 8.10 59.85 0.48 4.49 16 15 C -0.26 -6.92 9.52 -15.06 -0.14 -7.07 16 16 H 0.07 1.70 7.84 -52.49 -0.41 1.29 16 17 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 18 N -0.91 -26.05 10.87 55.49 0.60 -25.45 16 19 Si 0.90 21.51 29.56 -169.99 -5.02 16.48 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C -0.14 -2.51 5.34 -26.61 -0.14 -2.65 16 24 C 0.10 1.37 5.68 -3.71 -0.02 1.35 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 27 H 0.07 0.92 7.60 -51.93 -0.39 0.53 16 28 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.17 1.59 7.44 -52.48 -0.39 1.20 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.34 7.02 -51.93 -0.36 0.97 16 32 H 0.06 1.14 6.75 -51.93 -0.35 0.79 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.23 7.89 -51.93 -0.41 0.82 16 35 H 0.02 0.44 7.78 -51.93 -0.40 0.03 16 36 H 0.05 1.39 6.95 -51.93 -0.36 1.03 16 37 H -0.01 -0.14 6.48 -51.93 -0.34 -0.47 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.06 1.13 7.72 -51.93 -0.40 0.73 16 40 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 41 H 0.08 1.06 4.61 -51.93 -0.24 0.82 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -31.04 344.83 -9.34 -40.39 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.16 Total: -0.47 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.57 Total: -0.92 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.40 Total: -49.88 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.48 Total: -0.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.04 -9.34 -40.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985367708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.677 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds