Wall clock time and date at job start Tue Mar 31 2020 09:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32774 * 123.45777 * 2 1 4 4 S 1.75501 * 110.57609 * 179.97438 * 3 2 1 5 5 C 1.70448 * 92.44278 * 0.02562 * 4 3 2 6 6 C 1.36008 * 110.82053 * 0.02562 * 5 4 3 7 7 C 1.47184 * 123.46169 * 179.97438 * 6 5 4 8 8 O 1.21639 * 119.99836 * 128.78341 * 7 6 5 9 9 N 1.34776 * 119.99841 * 308.78641 * 7 6 5 10 10 C 1.46931 * 120.62621 * 183.79733 * 9 7 6 11 11 C 1.53627 * 108.53998 * 126.37054 * 10 9 7 12 12 C 1.53037 * 109.24752 * 54.85346 * 11 10 9 13 13 N 1.46490 * 109.45192 * 178.49929 * 12 11 10 14 14 C 1.46505 * 120.00298 * 60.05929 * 13 12 11 15 15 C 1.36939 * 119.99903 * 240.06177 * 13 12 11 16 16 H 1.07998 * 120.00298 * 28.90232 * 15 13 12 17 17 C 1.38819 * 119.99974 * 208.89703 * 15 13 12 18 18 N 1.31623 * 119.99963 * 7.84092 * 17 15 13 19 19 Si 1.86793 * 120.00067 * 187.83824 * 17 15 13 20 20 H 1.48497 * 109.47454 * 90.00097 * 19 17 15 21 21 H 1.48500 * 109.47295 * 210.00339 * 19 17 15 22 22 H 1.48506 * 109.47087 * 330.00016 * 19 17 15 23 23 C 1.53045 * 109.53479 * 298.51302 * 12 11 10 24 24 C 1.46923 * 120.63308 * 4.07537 * 9 7 6 25 25 H 1.08998 * 109.46641 * 270.03733 * 1 2 3 26 26 H 1.08999 * 109.47380 * 30.03703 * 1 2 3 27 27 H 1.08997 * 109.46989 * 150.03860 * 1 2 3 28 28 H 1.08002 * 124.70704 * 359.96793 * 3 2 1 29 29 H 1.08004 * 124.58631 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.58620 * 246.19524 * 10 9 7 31 31 H 1.08993 * 109.58855 * 6.62710 * 10 9 7 32 32 H 1.09002 * 109.63210 * 294.85846 * 11 10 9 33 33 H 1.09006 * 109.42958 * 174.72620 * 11 10 9 34 34 H 1.09004 * 109.45807 * 58.52696 * 12 11 10 35 35 H 1.09000 * 109.46607 * 85.33052 * 14 13 12 36 36 H 1.08998 * 109.47457 * 205.32777 * 14 13 12 37 37 H 1.08997 * 109.46798 * 325.33088 * 14 13 12 38 38 H 0.96993 * 119.99583 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.49712 * 301.40798 * 23 12 11 40 40 H 1.09007 * 109.52218 * 181.32895 * 23 12 11 41 41 H 1.09001 * 109.58473 * 353.37706 * 24 9 7 42 42 H 1.09000 * 109.58465 * 113.65844 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2391 1.1077 0.0000 4 16 3.9499 0.7165 0.0007 5 6 3.6411 -0.9598 0.0003 6 6 2.3033 -1.2049 -0.0010 7 6 1.7263 -2.5589 -0.0022 8 8 0.8802 -2.8602 0.8181 9 7 2.1355 -3.4650 -0.9122 10 6 1.5106 -4.7930 -0.9795 11 6 1.0353 -5.0368 -2.4199 12 6 2.2130 -4.8474 -3.3786 13 7 1.7732 -5.1138 -4.7503 14 6 0.7013 -4.3114 -5.3449 15 6 2.3639 -6.1131 -5.4769 16 1 2.7784 -6.9740 -4.9736 17 6 2.4299 -6.0193 -6.8603 18 7 2.0667 -4.9068 -7.4626 19 14 3.0342 -7.4721 -7.8671 20 1 1.8826 -8.3369 -8.2290 21 1 3.6904 -6.9782 -9.1043 22 1 4.0102 -8.2561 -7.0683 23 6 2.7283 -3.4098 -3.2786 24 6 3.2191 -3.1456 -1.8516 25 1 -0.3632 0.0007 1.0277 26 1 -0.3634 0.8896 -0.5144 27 1 -0.3633 -0.8903 -0.5132 28 1 1.8374 2.1103 -0.0005 29 1 4.4045 -1.7238 0.0001 30 1 2.2386 -5.5541 -0.6984 31 1 0.6586 -4.8308 -0.3008 32 1 0.2453 -4.3285 -2.6697 33 1 0.6539 -6.0541 -2.5087 34 1 3.0125 -5.5390 -3.1127 35 1 1.1232 -3.4022 -5.7733 36 1 0.2080 -4.8871 -6.1280 37 1 -0.0245 -4.0478 -4.5756 38 1 2.1125 -4.8415 -8.4293 39 1 1.9225 -2.7169 -3.5203 40 1 3.5519 -3.2685 -3.9786 41 1 3.4947 -2.0961 -1.7484 42 1 4.0843 -3.7733 -1.6385 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985367708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:00 Heat of formation + Delta-G solvation = 2.879603 kcal Electronic energy + Delta-G solvation = -23768.356143 eV Core-core repulsion = 20453.969820 eV Total energy + Delta-G solvation = -3314.386324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47869 -39.20722 -38.09432 -36.70843 -34.03435 -32.70227 -31.68792 -31.27286 -28.68441 -28.01924 -26.77367 -25.07699 -24.21200 -23.45976 -21.78878 -20.44960 -19.29370 -18.80248 -18.48366 -17.93021 -16.98224 -16.86829 -16.28200 -15.76126 -15.43731 -15.08108 -15.00901 -14.74107 -14.55519 -14.46631 -14.19561 -13.95385 -13.72885 -13.31827 -13.22340 -13.15217 -12.89371 -12.82850 -12.74460 -12.65667 -12.36929 -12.21618 -12.05458 -11.92397 -11.86502 -11.61559 -11.26630 -10.92548 -10.60119 -9.81116 -9.71825 -9.19974 -8.67880 -7.83510 -5.35313 -0.10809 0.66459 0.93734 1.11793 1.47684 1.48652 1.57269 1.74095 2.16968 2.51144 3.32387 3.55842 3.64415 3.74992 3.89932 4.10934 4.15576 4.20247 4.29980 4.35320 4.39309 4.54864 4.59674 4.71101 4.72712 4.76059 4.79469 4.82171 4.90973 4.92776 5.00356 5.06798 5.21728 5.27951 5.35693 5.44429 5.48419 5.56975 5.66927 5.67504 6.33584 6.38859 7.05964 7.17333 7.87875 8.36250 9.21367 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.003514 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.052996 B = 7965.272321 C = 8344.595768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.087 4.087 3 C -0.236 4.236 4 S 0.236 5.764 5 C -0.219 4.219 6 C -0.171 4.171 7 C 0.577 3.423 8 O -0.577 6.577 9 N -0.598 5.598 10 C 0.122 3.878 11 C -0.132 4.132 12 C 0.174 3.826 13 N -0.610 5.610 14 C 0.183 3.817 15 C -0.265 4.265 16 H 0.070 0.930 17 C -0.047 4.047 18 N -0.938 5.938 19 Si 0.967 3.033 20 H -0.288 1.288 21 H -0.295 1.295 22 H -0.266 1.266 23 C -0.132 4.132 24 C 0.110 3.890 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.193 0.807 29 H 0.187 0.813 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.065 0.935 35 H -0.006 1.006 36 H 0.023 0.977 37 H 0.015 0.985 38 H 0.248 0.752 39 H 0.041 0.959 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 11.887 16.175 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.371 4.371 4 S 0.504 5.496 5 C -0.357 4.357 6 C -0.190 4.190 7 C 0.365 3.635 8 O -0.458 6.458 9 N -0.330 5.330 10 C 0.000 4.000 11 C -0.172 4.172 12 C 0.067 3.933 13 N -0.332 5.332 14 C 0.038 3.962 15 C -0.395 4.395 16 H 0.088 0.912 17 C -0.242 4.242 18 N -0.584 5.584 19 Si 0.796 3.204 20 H -0.215 1.215 21 H -0.222 1.222 22 H -0.191 1.191 23 C -0.172 4.172 24 C -0.013 4.013 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.210 0.790 29 H 0.204 0.796 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.012 0.988 36 H 0.042 0.958 37 H 0.034 0.966 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.120 0.880 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.143 12.625 16.408 21.332 hybrid contribution -1.320 -1.763 -1.196 2.507 sum 3.823 10.862 15.211 19.078 Atomic orbital electron populations 1.20430 0.89172 1.02509 1.02680 1.19916 0.97560 0.90390 1.01960 1.25619 0.97218 1.03016 1.11254 1.82814 1.04091 0.94630 1.68101 1.25895 0.98815 1.04675 1.06273 1.20081 0.93664 0.93391 1.11855 1.18055 0.80852 0.84352 0.80199 1.90738 1.34743 1.80420 1.39862 1.48136 1.36922 1.14444 1.33482 1.21684 0.98741 0.83120 0.96481 1.22337 0.99093 1.01537 0.94229 1.20517 0.94472 0.94443 0.83858 1.44100 1.39202 1.38463 1.11415 1.20374 0.88654 0.93612 0.93601 1.19545 1.32801 0.97818 0.89345 0.91245 1.25891 1.00730 0.99019 0.98595 1.70196 1.53387 1.26543 1.08266 0.85270 0.78024 0.79061 0.78085 1.21529 1.22189 1.19062 1.22251 1.00522 0.98444 0.95976 1.22093 0.88921 1.03209 0.87041 0.90748 0.89234 0.93865 0.78960 0.79581 0.89502 0.89924 0.93563 0.91097 0.91681 0.98786 0.95846 0.96642 0.94302 0.93968 0.92040 0.87981 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 9.69 71.24 0.69 -1.30 16 2 C -0.09 -2.01 6.01 -19.46 -0.12 -2.12 16 3 C -0.24 -3.97 10.91 66.64 0.73 -3.24 16 4 S 0.24 3.38 23.02 -56.49 -1.30 2.08 16 5 C -0.22 -4.17 8.39 67.30 0.56 -3.60 16 6 C -0.17 -4.35 5.05 -19.87 -0.10 -4.45 16 7 C 0.58 17.82 6.77 86.59 0.59 18.41 16 8 O -0.58 -21.35 16.10 -4.16 -0.07 -21.42 16 9 N -0.60 -17.21 2.97 -822.19 -2.44 -19.65 16 10 C 0.12 3.56 6.45 86.51 0.56 4.11 16 11 C -0.13 -4.51 5.31 30.82 0.16 -4.34 16 12 C 0.17 6.75 2.55 45.02 0.12 6.86 16 13 N -0.61 -30.07 2.79 -702.63 -1.96 -32.03 16 14 C 0.18 9.21 8.10 127.77 1.03 10.24 16 15 C -0.26 -14.27 9.52 84.03 0.80 -13.47 16 16 H 0.07 3.61 7.84 -2.91 -0.02 3.59 16 17 C -0.05 -2.59 5.13 84.86 0.44 -2.16 16 18 N -0.94 -55.17 10.87 21.65 0.24 -54.93 16 19 Si 0.97 44.40 29.56 68.60 2.03 46.43 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 C -0.13 -4.55 5.34 30.67 0.16 -4.39 16 24 C 0.11 2.84 5.68 86.36 0.49 3.33 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.09 1.53 8.13 -2.39 -0.02 1.51 16 27 H 0.04 1.17 7.60 -2.39 -0.02 1.16 16 28 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.19 2.83 7.44 -2.91 -0.02 2.81 16 30 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.08 2.52 7.02 -2.39 -0.02 2.50 16 32 H 0.05 1.71 6.75 -2.39 -0.02 1.70 16 33 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.06 2.49 7.89 -2.38 -0.02 2.47 16 35 H -0.01 -0.34 7.78 -2.39 -0.02 -0.35 16 36 H 0.02 1.27 6.95 -2.39 -0.02 1.26 16 37 H 0.02 0.69 6.48 -2.39 -0.02 0.68 16 38 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 39 H 0.04 1.59 7.72 -2.39 -0.02 1.58 16 40 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.10 2.32 4.61 -2.39 -0.01 2.31 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -68.33 344.83 3.62 -64.71 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 1.02 Total: 10.93 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 6.11 Total: 3.88 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -4.17 Total: -106.61 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.07 Total: -21.42 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.30 Total: 2.08 kcal Total: -68.33 3.62 -64.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985367708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.593 kcal (2) G-P(sol) polarization free energy of solvation -68.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds