Wall clock time and date at job start Tue Mar 31 2020 09:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.75505 * 124.71305 * 2 1 4 4 C 1.70446 * 92.44378 * 180.26535 * 3 2 1 5 5 C 1.36008 * 110.81990 * 0.02562 * 4 3 2 6 6 C 1.47183 * 123.46283 * 180.02562 * 5 4 3 7 7 O 1.21642 * 120.00401 * 179.97438 * 6 5 4 8 8 N 1.34781 * 119.99922 * 359.97438 * 6 5 4 9 9 C 1.46501 * 120.00004 * 180.02562 * 8 6 5 10 10 C 1.53000 * 110.88673 * 62.42383 * 9 8 6 11 11 C 1.55151 * 111.00577 * 186.34678 * 9 8 6 12 12 C 1.54320 * 102.94246 * 82.57088 * 11 9 8 13 13 N 1.47021 * 107.27060 * 22.19525 * 12 11 9 14 14 C 1.36941 * 125.64795 * 181.02427 * 13 12 11 15 15 H 1.08000 * 120.00013 * 180.02562 * 14 13 12 16 16 C 1.38808 * 120.00075 * 0.04385 * 14 13 12 17 17 N 1.31615 * 120.00001 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00012 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47345 * 59.99614 * 18 16 14 20 20 H 1.48499 * 109.47006 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47042 * 299.99499 * 18 16 14 22 22 C 1.47421 * 108.70493 * 1.05842 * 13 12 11 23 23 C 1.32774 * 124.71051 * 180.30411 * 2 1 3 24 24 C 1.50701 * 123.45452 * 359.73131 * 23 2 1 25 25 H 1.09009 * 109.47125 * 269.69936 * 1 2 3 26 26 H 1.08995 * 109.47381 * 29.69382 * 1 2 3 27 27 H 1.08996 * 109.47295 * 149.70163 * 1 2 3 28 28 H 1.08005 * 124.58969 * 180.02562 * 4 3 2 29 29 H 0.97000 * 119.99834 * 359.97438 * 8 6 5 30 30 H 1.08997 * 109.47162 * 60.70385 * 10 9 8 31 31 H 1.09000 * 109.47302 * 180.70307 * 10 9 8 32 32 H 1.09004 * 109.47296 * 300.70079 * 10 9 8 33 33 H 1.08996 * 110.72315 * 200.93249 * 11 9 8 34 34 H 1.08995 * 110.72013 * 324.21059 * 11 9 8 35 35 H 1.09000 * 109.88469 * 262.77663 * 12 11 9 36 36 H 1.08995 * 109.88569 * 141.61224 * 12 11 9 37 37 H 0.97004 * 120.00178 * 180.02562 * 17 16 14 38 38 H 1.09005 * 110.36858 * 217.03749 * 22 13 12 39 39 H 1.08993 * 110.46014 * 94.75706 * 22 13 12 40 40 H 1.09006 * 109.46758 * 90.02983 * 24 23 2 41 41 H 1.09004 * 109.46961 * 210.02205 * 24 23 2 42 42 H 1.08992 * 109.47574 * 330.02490 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5064 1.4427 0.0000 4 6 3.9476 0.5327 -0.0079 5 6 3.6776 -0.8003 -0.0109 6 6 4.7199 -1.8395 -0.0172 7 8 4.4070 -3.0150 -0.0192 8 7 6.0213 -1.4886 -0.0208 9 6 7.0588 -2.5229 -0.0277 10 6 6.9734 -3.3728 -1.2970 11 6 8.4696 -1.8966 0.1293 12 6 8.5931 -1.7011 1.6551 13 7 7.6494 -2.6312 2.2922 14 6 7.4382 -2.7558 3.6394 15 1 6.7199 -3.4723 4.0095 16 6 8.1472 -1.9608 4.5295 17 7 9.0227 -1.0876 4.0785 18 14 7.8597 -2.1312 6.3674 19 1 8.1791 -3.5178 6.7920 20 1 8.7340 -1.1771 7.0957 21 1 6.4376 -1.8343 6.6755 22 6 6.9687 -3.4082 1.2404 23 6 2.2630 -1.0914 -0.0058 24 6 1.7025 -2.4903 -0.0073 25 1 -0.3634 -0.0054 1.0277 26 1 -0.3634 0.8927 -0.5090 27 1 -0.3634 -0.8873 -0.5184 28 1 4.9408 0.9571 -0.0102 29 1 6.2709 -0.5513 -0.0196 30 1 7.1206 -2.7374 -2.1703 31 1 7.7460 -4.1413 -1.2725 32 1 5.9927 -3.8454 -1.3526 33 1 9.2373 -2.5790 -0.2354 34 1 8.5260 -0.9389 -0.3879 35 1 8.3376 -0.6750 1.9193 36 1 9.6098 -1.9266 1.9767 37 1 9.5184 -0.5323 4.7005 38 1 5.9265 -3.5798 1.5099 39 1 7.4789 -4.3574 1.0774 40 1 1.5640 -2.8251 -1.0354 41 1 2.3954 -3.1599 0.5024 42 1 0.7431 -2.4980 0.5098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046344607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:22 Heat of formation + Delta-G solvation = 14.847613 kcal Electronic energy + Delta-G solvation = -23901.127613 eV Core-core repulsion = 20587.260261 eV Total energy + Delta-G solvation = -3313.867352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.02935 -38.11070 -36.65994 -33.98493 -32.78836 -31.44283 -29.90982 -29.27898 -28.65435 -25.71825 -25.48977 -24.39351 -23.45545 -20.75357 -20.12029 -18.98622 -18.46645 -17.45691 -16.82911 -16.48047 -15.36317 -14.88199 -14.59239 -14.39808 -14.10866 -13.90150 -13.64903 -13.30180 -12.95656 -12.79982 -12.71581 -12.57254 -12.11259 -12.04294 -11.89168 -11.86299 -11.67072 -11.61869 -11.58472 -10.87026 -10.83914 -10.81654 -10.34612 -10.32552 -10.07899 -9.96361 -9.62063 -9.16327 -8.65974 -8.59968 -8.51129 -8.25472 -6.76289 -5.67443 -2.98937 0.81817 1.52248 1.91786 2.08285 3.43533 3.47351 3.48887 3.51237 3.71290 4.54165 4.64503 4.95906 5.03539 5.12001 5.30088 5.37106 5.38490 5.43323 5.51853 5.60173 5.65007 5.72255 5.75241 5.81995 5.85763 6.03065 6.10058 6.16464 6.18797 6.27389 6.37931 6.41523 6.57141 6.67226 6.72625 6.87748 7.18815 7.57383 7.58883 7.82770 7.95582 8.29756 8.64503 9.27212 9.87397 10.53542 11.44674 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.004627 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.201130 B = 6049.557118 C = 6906.061477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.216 4.216 3 S 0.168 5.832 4 C -0.210 4.210 5 C -0.140 4.140 6 C 0.580 3.420 7 O -0.533 6.533 8 N -0.696 5.696 9 C 0.157 3.843 10 C -0.149 4.149 11 C -0.147 4.147 12 C 0.178 3.822 13 N -0.603 5.603 14 C -0.220 4.220 15 H 0.075 0.925 16 C -0.010 4.010 17 N -0.926 5.926 18 Si 0.910 3.090 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.131 3.869 23 C -0.053 4.053 24 C -0.098 4.098 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.169 0.831 29 H 0.395 0.605 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.251 0.749 38 H 0.057 0.943 39 H 0.025 0.975 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.465 4.679 -12.893 18.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.332 4.332 3 S 0.435 5.565 4 C -0.348 4.348 5 C -0.158 4.158 6 C 0.366 3.634 7 O -0.412 6.412 8 N -0.345 5.345 9 C 0.071 3.929 10 C -0.207 4.207 11 C -0.186 4.186 12 C 0.053 3.947 13 N -0.329 5.329 14 C -0.349 4.349 15 H 0.093 0.907 16 C -0.205 4.205 17 N -0.574 5.574 18 Si 0.741 3.259 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.213 1.213 22 C 0.005 3.995 23 C -0.064 4.064 24 C -0.157 4.157 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.186 0.814 29 H 0.229 0.771 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.875 5.511 -12.673 18.888 hybrid contribution 0.684 -0.847 1.118 1.561 sum -12.191 4.664 -11.555 17.432 Atomic orbital electron populations 1.20281 0.87710 1.02896 1.02664 1.24092 1.00174 0.95582 1.13390 1.82824 0.94035 1.08638 1.70960 1.25560 1.04467 0.97619 1.07197 1.20249 0.94090 0.92629 1.08804 1.17433 0.81911 0.87786 0.76314 1.90677 1.81858 1.18395 1.50254 1.45668 1.04945 1.09778 1.74127 1.21489 0.86923 0.88664 0.95846 1.21987 1.03287 0.99538 0.95915 1.23229 0.94379 0.99888 1.01056 1.21139 0.94347 0.94485 0.84695 1.44428 1.44947 1.42263 1.01246 1.19018 1.18554 1.17011 0.80293 0.90674 1.24744 0.99063 0.98790 0.97917 1.69935 1.28642 1.26192 1.32621 0.86222 0.77328 0.77243 0.85154 1.21194 1.21638 1.21299 1.21890 0.97521 0.92831 0.87299 1.19733 0.90346 0.96608 0.99737 1.20638 1.00759 0.91784 1.02488 0.90897 0.91517 0.90522 0.81383 0.77103 0.93211 0.91835 0.90951 0.90826 0.91889 0.93766 0.93853 0.93877 0.92522 0.95753 0.91334 0.88655 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 9.75 36.00 0.35 -0.31 16 2 C -0.22 -2.56 6.44 -36.18 -0.23 -2.79 16 3 S 0.17 1.84 23.00 -107.50 -2.47 -0.63 16 4 C -0.21 -2.75 10.38 29.93 0.31 -2.44 16 5 C -0.14 -2.16 5.98 -104.63 -0.63 -2.79 16 6 C 0.58 10.32 7.18 -12.63 -0.09 10.23 16 7 O -0.53 -10.52 10.98 5.24 0.06 -10.46 16 8 N -0.70 -11.87 5.14 -46.75 -0.24 -12.11 16 9 C 0.16 2.84 0.82 -129.67 -0.11 2.74 16 10 C -0.15 -2.31 8.62 37.16 0.32 -1.99 16 11 C -0.15 -2.64 5.99 -24.90 -0.15 -2.79 16 12 C 0.18 4.26 5.36 -3.07 -0.02 4.24 16 13 N -0.60 -15.71 3.39 -170.08 -0.58 -16.28 16 14 C -0.22 -6.34 10.28 -15.06 -0.15 -6.49 16 15 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 16 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 17 N -0.93 -27.26 10.31 55.49 0.57 -26.69 16 18 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 22 C 0.13 2.94 6.11 -2.53 -0.02 2.92 16 23 C -0.05 -0.76 6.01 -104.06 -0.63 -1.38 16 24 C -0.10 -1.30 8.99 36.01 0.32 -0.97 16 25 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.60 7.34 -51.93 -0.38 0.21 16 28 H 0.17 1.90 7.01 -52.48 -0.37 1.54 16 29 H 0.39 6.01 6.99 -40.82 -0.29 5.73 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 32 H 0.07 1.21 6.45 -51.93 -0.34 0.88 16 33 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 34 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 35 H 0.04 1.15 7.38 -51.93 -0.38 0.77 16 36 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 37 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.06 1.37 6.31 -51.93 -0.33 1.04 16 39 H 0.02 0.55 8.03 -51.93 -0.42 0.13 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.52 6.03 -51.93 -0.31 1.21 16 42 H 0.06 0.66 7.30 -51.93 -0.38 0.28 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -32.40 344.35 -9.38 -41.78 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.07 Total: 3.75 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.81 Total: -2.20 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.25 Total: -55.08 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.06 Total: -10.46 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.47 Total: -0.63 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.40 -9.38 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046344607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.627 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds