Wall clock time and date at job start Tue Mar 31 2020 09:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.75505 * 124.71305 * 2 1 4 4 C 1.70446 * 92.44378 * 180.26535 * 3 2 1 5 5 C 1.36008 * 110.81990 * 0.02562 * 4 3 2 6 6 C 1.47183 * 123.46283 * 180.02562 * 5 4 3 7 7 O 1.21642 * 120.00401 * 179.97438 * 6 5 4 8 8 N 1.34781 * 119.99922 * 359.97438 * 6 5 4 9 9 C 1.46501 * 120.00004 * 180.02562 * 8 6 5 10 10 C 1.53000 * 110.88673 * 62.42383 * 9 8 6 11 11 C 1.55151 * 111.00577 * 186.34678 * 9 8 6 12 12 C 1.54320 * 102.94246 * 82.57088 * 11 9 8 13 13 N 1.47021 * 107.27060 * 22.19525 * 12 11 9 14 14 C 1.36941 * 125.64795 * 181.02427 * 13 12 11 15 15 H 1.08000 * 120.00013 * 180.02562 * 14 13 12 16 16 C 1.38808 * 120.00075 * 0.04385 * 14 13 12 17 17 N 1.31615 * 120.00001 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00012 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47345 * 59.99614 * 18 16 14 20 20 H 1.48499 * 109.47006 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47042 * 299.99499 * 18 16 14 22 22 C 1.47421 * 108.70493 * 1.05842 * 13 12 11 23 23 C 1.32774 * 124.71051 * 180.30411 * 2 1 3 24 24 C 1.50701 * 123.45452 * 359.73131 * 23 2 1 25 25 H 1.09009 * 109.47125 * 269.69936 * 1 2 3 26 26 H 1.08995 * 109.47381 * 29.69382 * 1 2 3 27 27 H 1.08996 * 109.47295 * 149.70163 * 1 2 3 28 28 H 1.08005 * 124.58969 * 180.02562 * 4 3 2 29 29 H 0.97000 * 119.99834 * 359.97438 * 8 6 5 30 30 H 1.08997 * 109.47162 * 60.70385 * 10 9 8 31 31 H 1.09000 * 109.47302 * 180.70307 * 10 9 8 32 32 H 1.09004 * 109.47296 * 300.70079 * 10 9 8 33 33 H 1.08996 * 110.72315 * 200.93249 * 11 9 8 34 34 H 1.08995 * 110.72013 * 324.21059 * 11 9 8 35 35 H 1.09000 * 109.88469 * 262.77663 * 12 11 9 36 36 H 1.08995 * 109.88569 * 141.61224 * 12 11 9 37 37 H 0.97004 * 120.00178 * 180.02562 * 17 16 14 38 38 H 1.09005 * 110.36858 * 217.03749 * 22 13 12 39 39 H 1.08993 * 110.46014 * 94.75706 * 22 13 12 40 40 H 1.09006 * 109.46758 * 90.02983 * 24 23 2 41 41 H 1.09004 * 109.46961 * 210.02205 * 24 23 2 42 42 H 1.08992 * 109.47574 * 330.02490 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5064 1.4427 0.0000 4 6 3.9476 0.5327 -0.0079 5 6 3.6776 -0.8003 -0.0109 6 6 4.7199 -1.8395 -0.0172 7 8 4.4070 -3.0150 -0.0192 8 7 6.0213 -1.4886 -0.0208 9 6 7.0588 -2.5229 -0.0277 10 6 6.9734 -3.3728 -1.2970 11 6 8.4696 -1.8966 0.1293 12 6 8.5931 -1.7011 1.6551 13 7 7.6494 -2.6312 2.2922 14 6 7.4382 -2.7558 3.6394 15 1 6.7199 -3.4723 4.0095 16 6 8.1472 -1.9608 4.5295 17 7 9.0227 -1.0876 4.0785 18 14 7.8597 -2.1312 6.3674 19 1 8.1791 -3.5178 6.7920 20 1 8.7340 -1.1771 7.0957 21 1 6.4376 -1.8343 6.6755 22 6 6.9687 -3.4082 1.2404 23 6 2.2630 -1.0914 -0.0058 24 6 1.7025 -2.4903 -0.0073 25 1 -0.3634 -0.0054 1.0277 26 1 -0.3634 0.8927 -0.5090 27 1 -0.3634 -0.8873 -0.5184 28 1 4.9408 0.9571 -0.0102 29 1 6.2709 -0.5513 -0.0196 30 1 7.1206 -2.7374 -2.1703 31 1 7.7460 -4.1413 -1.2725 32 1 5.9927 -3.8454 -1.3526 33 1 9.2373 -2.5790 -0.2354 34 1 8.5260 -0.9389 -0.3879 35 1 8.3376 -0.6750 1.9193 36 1 9.6098 -1.9266 1.9767 37 1 9.5184 -0.5323 4.7005 38 1 5.9265 -3.5798 1.5099 39 1 7.4789 -4.3574 1.0774 40 1 1.5640 -2.8251 -1.0354 41 1 2.3954 -3.1599 0.5024 42 1 0.7431 -2.4980 0.5098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046344607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:21 Heat of formation + Delta-G solvation = -5.356090 kcal Electronic energy + Delta-G solvation = -23902.003711 eV Core-core repulsion = 20587.260261 eV Total energy + Delta-G solvation = -3314.743450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.38890 -39.44329 -38.02370 -35.70642 -34.14225 -32.96847 -31.50530 -30.34709 -30.23964 -27.52983 -26.52305 -25.68806 -25.09199 -22.33751 -21.69404 -20.41401 -19.57912 -18.97071 -18.24004 -17.80206 -16.97686 -16.61188 -16.16613 -15.65959 -15.52861 -15.24474 -15.01940 -14.67814 -14.18420 -13.96579 -13.86590 -13.63671 -13.60934 -13.52241 -13.40698 -13.07725 -12.89393 -12.84658 -12.76482 -12.70023 -12.59545 -12.13366 -12.06583 -11.98749 -11.74039 -11.70936 -11.54105 -10.72220 -10.53989 -10.00626 -9.57645 -9.23093 -8.87281 -7.87203 -5.20751 -0.20817 0.60481 0.94397 0.99963 1.41476 1.44290 1.50774 2.21177 2.44047 2.46943 3.30813 3.54316 3.68951 3.74602 3.99140 4.04341 4.16615 4.18087 4.33274 4.44306 4.62348 4.66164 4.68875 4.76512 4.78919 4.83179 4.85485 4.87397 4.92278 5.03320 5.04997 5.07720 5.15473 5.30288 5.36788 5.40681 5.61934 5.65013 5.70085 5.77177 6.18540 6.63744 7.10356 7.32248 7.76168 8.40597 9.22471 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.004627 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.201130 B = 6049.557118 C = 6906.061477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.214 4.214 3 S 0.230 5.770 4 C -0.217 4.217 5 C -0.174 4.174 6 C 0.573 3.427 7 O -0.562 6.562 8 N -0.695 5.695 9 C 0.167 3.833 10 C -0.139 4.139 11 C -0.128 4.128 12 C 0.186 3.814 13 N -0.621 5.621 14 C -0.243 4.243 15 H 0.066 0.934 16 C -0.057 4.057 17 N -0.945 5.945 18 Si 0.973 3.027 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.283 1.283 22 C 0.128 3.872 23 C -0.085 4.085 24 C -0.091 4.091 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.181 0.819 29 H 0.403 0.597 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.016 0.984 36 H 0.009 0.991 37 H 0.248 0.752 38 H 0.031 0.969 39 H 0.025 0.975 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.597 6.188 -14.004 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.330 4.330 3 S 0.498 5.502 4 C -0.355 4.355 5 C -0.192 4.192 6 C 0.360 3.640 7 O -0.443 6.443 8 N -0.346 5.346 9 C 0.081 3.919 10 C -0.197 4.197 11 C -0.167 4.167 12 C 0.061 3.939 13 N -0.347 5.347 14 C -0.373 4.373 15 H 0.084 0.916 16 C -0.251 4.251 17 N -0.594 5.594 18 Si 0.801 3.199 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.209 1.209 22 C 0.002 3.998 23 C -0.095 4.095 24 C -0.150 4.150 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.199 0.801 29 H 0.239 0.761 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.034 0.966 36 H 0.027 0.973 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.042 0.958 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.018 7.025 -13.810 20.894 hybrid contribution 0.973 -1.265 1.489 2.183 sum -13.045 5.759 -12.321 18.845 Atomic orbital electron populations 1.20438 0.85328 1.04377 1.03651 1.24558 1.01904 0.95442 1.11145 1.82610 0.91861 1.06904 1.68812 1.25859 1.06476 0.97326 1.05883 1.20216 0.94191 0.92927 1.11849 1.17883 0.82438 0.88099 0.75542 1.90659 1.82330 1.19746 1.51529 1.45652 1.04755 1.10038 1.74125 1.21368 0.87261 0.88494 0.94825 1.21905 1.02883 0.99708 0.95199 1.23107 0.94715 1.02240 0.96613 1.20931 0.91880 0.92449 0.88606 1.44677 1.45763 1.43034 1.01221 1.19276 1.18627 1.17153 0.82199 0.91563 1.25502 0.98976 0.98645 1.01959 1.70135 1.29093 1.26566 1.33592 0.85247 0.77192 0.77339 0.80127 1.20520 1.21291 1.20890 1.21987 0.95507 0.93581 0.88699 1.19854 0.90195 0.97520 1.01934 1.20527 1.00729 0.91122 1.02596 0.90006 0.89500 0.89662 0.80134 0.76081 0.90549 0.90574 0.92496 0.88848 0.88528 0.96551 0.97275 0.94291 0.95073 0.95755 0.90865 0.92085 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 9.75 71.24 0.69 -0.44 16 2 C -0.21 -4.62 6.44 24.51 0.16 -4.46 16 3 S 0.23 4.44 23.00 -56.49 -1.30 3.14 16 4 C -0.22 -5.39 10.38 67.30 0.70 -4.69 16 5 C -0.17 -5.36 5.98 -19.87 -0.12 -5.47 16 6 C 0.57 20.78 7.18 86.59 0.62 21.40 16 7 O -0.56 -23.12 10.98 -4.16 -0.05 -23.17 16 8 N -0.70 -23.58 5.14 -420.07 -2.16 -25.74 16 9 C 0.17 5.95 0.82 4.99 0.00 5.95 16 10 C -0.14 -4.07 8.62 71.98 0.62 -3.45 16 11 C -0.13 -4.42 5.99 31.78 0.19 -4.23 16 12 C 0.19 9.05 5.36 86.73 0.47 9.52 16 13 N -0.62 -33.34 3.39 -692.01 -2.35 -35.69 16 14 C -0.24 -14.46 10.28 84.03 0.86 -13.59 16 15 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 16 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 17 N -0.95 -56.88 10.31 21.65 0.22 -56.66 16 18 Si 0.97 47.32 29.55 68.60 2.03 49.35 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 22 C 0.13 5.90 6.11 86.86 0.53 6.43 16 23 C -0.08 -2.36 6.01 -19.46 -0.12 -2.47 16 24 C -0.09 -2.44 8.99 71.24 0.64 -1.80 16 25 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 1.09 7.34 -2.39 -0.02 1.08 16 28 H 0.18 3.82 7.01 -2.91 -0.02 3.80 16 29 H 0.40 11.96 6.99 -92.71 -0.65 11.31 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 32 H 0.06 1.88 6.45 -2.39 -0.02 1.87 16 33 H 0.09 2.89 8.04 -2.39 -0.02 2.88 16 34 H 0.10 2.71 8.05 -2.39 -0.02 2.69 16 35 H 0.02 0.87 7.38 -2.39 -0.02 0.85 16 36 H 0.01 0.50 7.51 -2.39 -0.02 0.48 16 37 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 38 H 0.03 1.58 6.31 -2.38 -0.02 1.56 16 39 H 0.02 1.12 8.03 -2.39 -0.02 1.10 16 40 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.06 2.06 6.03 -2.38 -0.01 2.04 16 42 H 0.08 1.72 7.30 -2.39 -0.02 1.70 16 Total: -1.00 -73.22 344.35 2.50 -70.71 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.39 Total: 18.26 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.72 Total: -0.20 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -4.29 Total: -118.08 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.30 Total: 3.14 kcal Total: -73.22 2.50 -70.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046344607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.359 kcal (2) G-P(sol) polarization free energy of solvation -73.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds