Wall clock time and date at job start Tue Mar 31 2020 10:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46878 * 2 1 4 4 N 1.46508 * 109.47219 * 180.02562 * 3 2 1 5 5 C 1.34772 * 120.00104 * 179.97438 * 4 3 2 6 6 S 1.71198 * 120.00336 * 359.97438 * 5 4 3 7 7 N 1.34782 * 119.99680 * 179.97438 * 5 4 3 8 8 C 1.39884 * 119.99814 * 185.53673 * 7 5 4 9 9 C 1.38936 * 120.04664 * 221.89329 * 8 7 5 10 10 C 1.38113 * 120.04280 * 180.02562 * 9 8 7 11 11 C 1.38213 * 120.12596 * 359.67496 * 10 9 8 12 12 C 1.38761 * 120.08610 * 0.60061 * 11 10 9 13 13 O 1.35901 * 120.02426 * 179.69857 * 12 11 10 14 14 C 1.42898 * 116.99922 * 359.72375 * 13 12 11 15 15 C 1.52993 * 109.47295 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47374 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99785 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00027 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00211 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99810 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47383 * 59.99863 * 20 18 16 22 22 H 1.48500 * 109.46933 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46853 * 299.99953 * 20 18 16 24 24 C 1.38629 * 119.95937 * 359.42175 * 12 11 10 25 25 H 1.08999 * 109.47342 * 299.99851 * 1 2 3 26 26 H 1.09000 * 109.47267 * 60.00346 * 1 2 3 27 27 H 1.09004 * 109.46701 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47346 * 239.99672 * 2 1 3 29 29 H 1.09008 * 109.47012 * 119.99656 * 2 1 3 30 30 H 1.09002 * 109.47728 * 59.99784 * 3 2 1 31 31 H 1.09004 * 109.47174 * 299.99191 * 3 2 1 32 32 H 0.97005 * 119.99483 * 359.97438 * 4 3 2 33 33 H 0.96995 * 119.99710 * 5.53990 * 7 5 4 34 34 H 1.08001 * 119.97877 * 0.02562 * 9 8 7 35 35 H 1.08006 * 119.94097 * 179.97438 * 10 9 8 36 36 H 1.08001 * 119.96133 * 180.29719 * 11 10 9 37 37 H 1.09002 * 109.47081 * 300.00303 * 14 13 12 38 38 H 1.09003 * 109.46910 * 60.00196 * 14 13 12 39 39 H 1.09002 * 109.47083 * 300.00032 * 15 14 13 40 40 H 1.08992 * 109.47492 * 59.99754 * 15 14 13 41 41 H 0.96997 * 119.99748 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.06614 * 180.25263 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1788 2.6097 -0.0012 6 16 3.3229 4.0924 -0.0020 7 7 5.5267 2.6097 -0.0013 8 6 6.2261 3.8156 0.1149 9 6 7.3492 4.0468 -0.6696 10 6 8.0400 5.2372 -0.5544 11 6 7.6125 6.2039 0.3361 12 6 6.4948 5.9763 1.1264 13 8 6.0792 6.9252 2.0060 14 6 6.8439 8.1308 2.0689 15 6 6.2288 9.0712 3.1072 16 6 7.0348 10.3428 3.1732 17 1 7.8996 10.4676 2.5383 18 6 6.6683 11.3469 4.0440 19 7 5.6150 11.1952 4.8168 20 14 7.6670 12.9235 4.1252 21 1 7.6607 13.5826 2.7946 22 1 7.0700 13.8362 5.1332 23 1 9.0646 12.6046 4.5131 24 6 5.7990 4.7825 1.0140 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9900 0.6025 -0.0006 33 1 6.0116 1.7736 -0.0820 34 1 7.6822 3.2952 -1.3700 35 1 8.9131 5.4150 -1.1648 36 1 8.1519 7.1358 0.4206 37 1 7.8694 7.8961 2.3541 38 1 6.8400 8.6149 1.0923 39 1 5.2032 9.3059 2.8225 40 1 6.2329 8.5869 4.0837 41 1 5.3569 11.9018 5.4291 42 1 4.9265 4.6052 1.6253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054955310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:56 Heat of formation + Delta-G solvation = -4.070416 kcal Electronic energy + Delta-G solvation = -21793.815806 eV Core-core repulsion = 18479.128107 eV Total energy + Delta-G solvation = -3314.687699 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.31478 -39.06678 -37.51026 -35.68208 -33.39397 -33.21902 -30.83539 -29.60608 -29.08934 -26.71746 -24.97415 -24.27015 -22.77489 -22.13088 -21.92552 -20.53503 -18.83869 -18.42045 -16.91119 -16.27106 -16.15152 -15.91772 -15.59631 -15.36869 -15.18669 -15.07834 -14.53357 -14.24704 -13.55798 -13.52424 -13.16098 -12.74695 -12.51549 -12.38801 -12.25839 -11.76427 -11.68788 -11.58437 -11.34794 -11.27716 -11.13346 -10.82347 -10.76237 -10.45619 -10.00592 -9.75125 -9.58072 -9.23544 -8.63878 -8.37650 -7.95761 -7.75013 -7.04273 -6.03100 -4.07673 0.85423 1.63070 1.70014 1.84811 2.33197 3.14565 3.33467 3.37620 3.39576 3.96348 3.97915 4.24848 4.43503 4.47197 4.66047 5.01550 5.08988 5.14701 5.15790 5.23961 5.32902 5.33679 5.42834 5.48732 5.58688 5.62527 5.67783 5.75253 5.92586 6.10591 6.13925 6.25353 6.45656 6.47849 6.56318 6.66544 6.81447 6.95146 7.11037 7.59511 7.74118 7.89045 8.16692 8.31748 8.97873 9.56036 11.08443 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.002526 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.654496 B =11080.655514 C =12284.509190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.121 3.879 4 N -0.684 5.684 5 C 0.547 3.453 6 S -0.597 6.597 7 N -0.630 5.630 8 C 0.157 3.843 9 C -0.175 4.175 10 C -0.075 4.075 11 C -0.207 4.207 12 C 0.156 3.844 13 O -0.309 6.309 14 C 0.065 3.935 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.113 4.113 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.395 0.605 33 H 0.404 0.596 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.029 0.971 40 H 0.027 0.973 41 H 0.263 0.737 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -27.023 -11.972 29.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C -0.002 4.002 4 N -0.314 5.314 5 C 0.191 3.809 6 S -0.469 6.469 7 N -0.256 5.256 8 C 0.064 3.936 9 C -0.196 4.196 10 C -0.094 4.094 11 C -0.226 4.226 12 C 0.107 3.893 13 O -0.222 6.222 14 C -0.009 4.009 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.135 4.135 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.231 0.769 33 H 0.242 0.758 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.855 -25.897 -11.677 28.551 hybrid contribution 1.593 -0.603 -0.158 1.711 sum -1.261 -26.500 -11.835 29.050 Atomic orbital electron populations 1.21658 0.93788 1.02332 1.02919 1.21781 0.97713 0.95406 1.02624 1.21869 0.75556 0.97557 1.05221 1.45047 1.08932 1.05333 1.72049 1.22513 0.84952 0.92845 0.80613 1.93826 1.67094 1.14985 1.70955 1.42139 1.02984 1.09680 1.70777 1.16893 0.93523 0.85901 0.97299 1.20568 0.98198 0.99284 1.01520 1.20589 0.98973 0.92295 0.97506 1.21451 0.99096 1.01667 1.00418 1.18838 0.91669 0.89379 0.89417 1.86206 1.54080 1.26537 1.55374 1.23333 0.94452 0.81712 1.01395 1.19118 0.97218 0.91876 0.93011 1.20938 1.12645 1.00315 1.22498 0.92426 1.24993 0.95203 0.98690 0.95352 1.69974 1.25143 1.33788 1.23814 0.86554 0.80166 0.82790 0.77880 1.20100 1.21166 1.20152 1.20421 1.00962 0.92125 1.00038 0.91896 0.91996 0.92050 0.91402 0.91292 0.89181 0.89357 0.76862 0.75830 0.86355 0.85641 0.84957 0.93175 0.93055 0.95271 0.95417 0.92694 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.91 37.16 0.37 -0.26 16 2 C -0.14 -0.55 6.05 -26.73 -0.16 -0.71 16 3 C 0.12 0.84 5.13 -4.04 -0.02 0.82 16 4 N -0.68 -4.73 5.56 -62.03 -0.34 -5.07 16 5 C 0.55 6.11 7.74 -86.92 -0.67 5.43 16 6 S -0.60 -10.18 25.06 -107.50 -2.69 -12.87 16 7 N -0.63 -6.08 5.33 -11.42 -0.06 -6.14 16 8 C 0.16 2.07 5.91 -83.73 -0.49 1.57 16 9 C -0.17 -2.05 9.97 -39.37 -0.39 -2.44 16 10 C -0.07 -0.95 10.03 -39.64 -0.40 -1.35 16 11 C -0.21 -3.28 9.04 -39.40 -0.36 -3.63 16 12 C 0.16 2.88 6.68 -39.24 -0.26 2.62 16 13 O -0.31 -6.79 10.13 -19.43 -0.20 -6.99 16 14 C 0.07 1.45 4.68 37.15 0.17 1.63 16 15 C 0.02 0.68 5.34 -27.89 -0.15 0.53 16 16 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 20 Si 0.90 21.68 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.11 -1.92 7.79 -39.24 -0.31 -2.22 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.09 0.78 7.99 -51.93 -0.42 0.36 16 31 H 0.09 0.73 7.99 -51.93 -0.41 0.32 16 32 H 0.40 1.34 8.49 -40.82 -0.35 0.99 16 33 H 0.40 2.18 8.84 -40.82 -0.36 1.82 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 36 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 37 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 38 H 0.05 1.09 7.65 -51.93 -0.40 0.70 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.15 2.72 6.27 -49.92 -0.31 2.41 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -35.47 363.43 -11.51 -46.97 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.32 Total: -0.01 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -3.08 Total: -11.68 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.33 Total: -37.55 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.20 Total: -6.99 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -10.18 SS G_CDS: -2.69 Total: -12.87 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.47 -11.51 -46.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054955310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.903 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds