Wall clock time and date at job start Tue Mar 31 2020 09:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47393 * 2 1 4 4 C 1.37479 * 123.34794 * 264.96971 * 3 2 1 5 5 C 1.33819 * 115.09975 * 180.02562 * 4 3 2 6 6 S 1.70615 * 110.95684 * 359.73224 * 5 4 3 7 7 C 1.36647 * 123.35853 * 84.99661 * 3 2 1 8 8 C 1.46589 * 125.45473 * 359.97438 * 7 3 2 9 9 O 1.21700 * 119.99551 * 0.02562 * 8 7 3 10 10 N 1.34769 * 119.99924 * 179.97438 * 8 7 3 11 11 C 1.46506 * 119.99837 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.46966 * 173.22846 * 11 10 8 13 13 H 1.09007 * 109.87807 * 57.33522 * 12 11 10 14 14 C 1.54326 * 109.88299 * 178.34645 * 12 11 10 15 15 C 1.55157 * 102.94372 * 141.61061 * 14 12 11 16 16 C 1.54915 * 101.58177 * 324.50013 * 15 14 12 17 17 N 1.47018 * 109.88522 * 296.15486 * 12 11 10 18 18 C 1.36939 * 125.64823 * 61.60541 * 17 12 11 19 19 H 1.08005 * 119.99856 * 324.44640 * 18 17 12 20 20 C 1.38815 * 120.00176 * 144.44077 * 18 17 12 21 21 N 1.31619 * 119.99708 * 162.70661 * 20 18 17 22 22 Si 1.86801 * 119.99944 * 342.70425 * 20 18 17 23 23 H 1.48499 * 109.46843 * 95.09282 * 22 20 18 24 24 H 1.48496 * 109.47006 * 215.09090 * 22 20 18 25 25 H 1.48499 * 109.46984 * 335.09352 * 22 20 18 26 26 H 1.08998 * 109.46830 * 300.00943 * 1 2 3 27 27 H 1.09005 * 109.46472 * 60.00540 * 1 2 3 28 28 H 1.08991 * 109.47382 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47343 * 239.99177 * 2 1 3 30 30 H 1.09005 * 109.46472 * 119.99460 * 2 1 3 31 31 H 1.08003 * 122.44926 * 0.04590 * 4 3 2 32 32 H 1.07996 * 124.52224 * 179.97438 * 5 4 3 33 33 H 0.96997 * 120.00450 * 0.02562 * 10 8 7 34 34 H 1.08993 * 109.47079 * 53.22524 * 11 10 8 35 35 H 1.09000 * 109.46820 * 293.22870 * 11 10 8 36 36 H 1.09001 * 110.72107 * 259.97130 * 14 12 11 37 37 H 1.09002 * 110.71515 * 23.24875 * 14 12 11 38 38 H 1.08994 * 111.00440 * 82.57250 * 15 14 12 39 39 H 1.09001 * 111.00501 * 206.42673 * 15 14 12 40 40 H 1.09002 * 110.36858 * 278.17254 * 16 15 14 41 41 H 1.08993 * 110.36858 * 155.84826 * 16 15 14 42 42 H 0.97003 * 119.99729 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3793 2.0997 -1.1440 5 6 2.8054 3.3537 -0.9527 6 16 2.7865 3.7585 0.7046 7 6 2.1891 2.1623 1.1370 8 6 1.8996 1.7028 2.4985 9 8 1.4833 0.5743 2.6842 10 7 2.0954 2.5295 3.5447 11 6 1.8065 2.0700 4.9055 12 6 2.2691 3.1275 5.9098 13 1 1.7798 4.0784 5.6984 14 6 1.9317 2.6714 7.3450 15 6 3.1661 3.1425 8.1585 16 6 4.3120 2.9252 7.1390 17 7 3.7288 3.2849 5.8336 18 6 4.4307 3.6966 4.7322 19 1 4.1047 3.4061 3.7444 20 6 5.5613 4.4874 4.8853 21 7 6.4219 4.6037 3.8963 22 14 5.8612 5.3865 6.4950 23 1 6.7510 4.5703 7.3595 24 1 6.5049 6.6957 6.2182 25 1 4.5661 5.6080 7.1870 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.3124 1.6537 -2.1254 32 1 3.1159 4.0218 -1.7424 33 1 2.4275 3.4287 3.3967 34 1 2.3347 1.1352 5.0931 35 1 0.7340 1.9096 5.0148 36 1 1.0252 3.1602 7.7019 37 1 1.8303 1.5871 7.3912 38 1 3.0777 4.1948 8.4284 39 1 3.3091 2.5242 9.0447 40 1 4.6270 1.8817 7.1391 41 1 5.1545 3.5767 7.3706 42 1 7.2117 5.1566 4.0031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028331724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:48 Heat of formation + Delta-G solvation = 18.314623 kcal Electronic energy + Delta-G solvation = -23797.262861 eV Core-core repulsion = 20483.545850 eV Total energy + Delta-G solvation = -3313.717011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.54043 -38.24284 -37.32559 -34.02438 -32.68034 -32.50783 -30.10933 -30.00122 -28.55586 -25.53187 -24.64751 -23.58646 -22.16522 -21.19782 -20.38277 -19.82378 -18.48432 -17.81363 -16.77564 -16.24042 -15.54203 -15.30893 -14.88071 -14.59968 -14.38456 -13.87309 -13.75152 -13.42228 -13.07115 -13.04531 -12.76004 -12.50792 -12.28231 -12.13282 -11.97973 -11.69784 -11.36369 -11.29940 -11.26299 -10.93335 -10.85089 -10.67836 -10.47320 -10.39192 -10.21486 -9.87841 -9.57087 -9.37204 -8.68003 -8.60335 -8.29165 -8.16431 -6.88252 -6.04537 -3.49742 0.82628 1.81386 2.21217 2.63529 3.28002 3.41696 3.46506 3.61533 3.78664 4.46884 4.89179 4.99680 5.11109 5.20769 5.30496 5.33208 5.42606 5.43172 5.50889 5.58220 5.64558 5.81455 5.86954 5.92172 5.96063 6.07373 6.10050 6.18906 6.21869 6.24402 6.30942 6.36940 6.43367 6.55387 6.58664 6.72802 6.82817 6.83807 7.02723 7.82708 8.07426 8.26344 8.69191 8.76308 9.59181 10.17898 11.09301 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.005075 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.883047 B = 5515.670212 C = 6860.256140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 C -0.032 4.032 4 C -0.151 4.151 5 C -0.244 4.244 6 S 0.236 5.764 7 C -0.264 4.264 8 C 0.586 3.414 9 O -0.544 6.544 10 N -0.705 5.705 11 C 0.118 3.882 12 C 0.142 3.858 13 H 0.048 0.952 14 C -0.120 4.120 15 C -0.136 4.136 16 C 0.118 3.882 17 N -0.601 5.601 18 C -0.259 4.259 19 H 0.090 0.910 20 C 0.036 3.964 21 N -0.898 5.898 22 Si 0.889 3.111 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.268 1.268 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.138 0.862 32 H 0.165 0.835 33 H 0.409 0.591 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.031 0.969 41 H 0.041 0.959 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.279 -2.741 -4.303 11.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 C -0.048 4.048 4 C -0.182 4.182 5 C -0.382 4.382 6 S 0.506 5.494 7 C -0.385 4.385 8 C 0.372 3.628 9 O -0.425 6.425 10 N -0.357 5.357 11 C -0.008 4.008 12 C 0.035 3.965 13 H 0.066 0.934 14 C -0.159 4.159 15 C -0.174 4.174 16 C -0.006 4.006 17 N -0.327 5.327 18 C -0.386 4.386 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.539 5.539 22 Si 0.721 3.279 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.193 1.193 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.156 0.844 32 H 0.182 0.818 33 H 0.248 0.752 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.962 -2.033 -3.465 10.742 hybrid contribution 0.444 -0.167 -0.240 0.532 sum -9.518 -2.200 -3.706 10.448 Atomic orbital electron populations 1.21585 0.94725 1.01301 1.01575 1.20346 0.96168 0.90980 1.03277 1.19402 0.97573 0.97311 0.90486 1.19803 1.04757 0.94348 0.99340 1.25297 1.08580 1.01637 1.02659 1.83622 1.58056 1.10409 0.97346 1.24575 1.15960 1.00205 0.97759 1.16911 0.77896 0.85041 0.82936 1.90715 1.47407 1.18992 1.85345 1.46105 1.65817 1.17498 1.06277 1.21949 0.98608 0.99223 0.81008 1.21288 0.87242 0.95587 0.92399 0.93448 1.22483 0.97779 1.00855 0.94773 1.22780 0.96063 1.00954 0.97627 1.21881 0.94723 0.97719 0.86265 1.44679 0.99724 1.78161 1.10166 1.18660 1.08112 1.25962 0.85895 0.89236 1.25419 0.97193 0.97067 0.96839 1.69811 1.11274 1.40397 1.32455 0.86705 0.77929 0.78851 0.84431 1.21614 1.23217 1.19342 0.92227 0.93501 0.92733 0.91787 0.88787 0.84424 0.81791 0.75192 0.91446 0.92744 0.91379 0.91214 0.91581 0.91536 0.95088 0.94166 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.78 37.16 0.36 -1.38 16 2 C -0.07 -0.98 5.50 -27.88 -0.15 -1.14 16 3 C -0.03 -0.51 5.16 -105.48 -0.54 -1.05 16 4 C -0.15 -2.04 9.96 -41.41 -0.41 -2.45 16 5 C -0.24 -3.26 10.92 29.18 0.32 -2.94 16 6 S 0.24 3.75 22.16 -107.50 -2.38 1.37 16 7 C -0.26 -4.66 6.45 -36.79 -0.24 -4.90 16 8 C 0.59 11.46 7.78 -12.90 -0.10 11.36 16 9 O -0.54 -11.33 13.69 5.19 0.07 -11.26 16 10 N -0.70 -13.62 4.33 -61.65 -0.27 -13.88 16 11 C 0.12 2.15 5.16 -4.04 -0.02 2.12 16 12 C 0.14 2.62 3.31 -66.96 -0.22 2.40 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C -0.12 -1.81 6.48 -24.90 -0.16 -1.97 16 15 C -0.14 -2.23 7.09 -24.58 -0.17 -2.40 16 16 C 0.12 2.47 6.19 -2.53 -0.02 2.45 16 17 N -0.60 -13.56 2.68 -162.57 -0.44 -13.99 16 18 C -0.26 -6.74 9.51 -15.06 -0.14 -6.89 16 19 H 0.09 2.41 5.49 -52.48 -0.29 2.12 16 20 C 0.04 0.99 5.45 -17.43 -0.10 0.90 16 21 N -0.90 -26.13 13.97 55.49 0.78 -25.35 16 22 Si 0.89 21.74 24.78 -169.99 -4.21 17.53 16 23 H -0.29 -7.02 6.87 56.52 0.39 -6.63 16 24 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 25 H -0.27 -6.33 6.99 56.52 0.40 -5.94 16 26 H 0.06 0.89 7.60 -51.93 -0.39 0.49 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.09 1.57 6.33 -51.93 -0.33 1.24 16 31 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 32 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.41 8.11 5.42 -40.82 -0.22 7.89 16 34 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.97 7.85 -51.93 -0.41 0.57 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.04 0.91 3.18 -51.93 -0.17 0.75 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 342.98 15.07 5.17 5.17 Total: -1.00 -30.35 342.98 -8.91 -39.26 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.03 Total: 7.06 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -1.60 Total: -5.89 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.07 Total: -53.23 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.21 Total: 17.53 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -2.38 Total: 1.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.35 -8.91 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028331724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.570 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds