Wall clock time and date at job start Tue Mar 31 2020 09:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47393 * 2 1 4 4 C 1.37479 * 123.34794 * 264.96971 * 3 2 1 5 5 C 1.33819 * 115.09975 * 180.02562 * 4 3 2 6 6 S 1.70615 * 110.95684 * 359.73224 * 5 4 3 7 7 C 1.36647 * 123.35853 * 84.99661 * 3 2 1 8 8 C 1.46589 * 125.45473 * 359.97438 * 7 3 2 9 9 O 1.21700 * 119.99551 * 0.02562 * 8 7 3 10 10 N 1.34769 * 119.99924 * 179.97438 * 8 7 3 11 11 C 1.46506 * 119.99837 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.46966 * 173.22846 * 11 10 8 13 13 H 1.09007 * 109.87807 * 57.33522 * 12 11 10 14 14 C 1.54326 * 109.88299 * 178.34645 * 12 11 10 15 15 C 1.55157 * 102.94372 * 141.61061 * 14 12 11 16 16 C 1.54915 * 101.58177 * 324.50013 * 15 14 12 17 17 N 1.47018 * 109.88522 * 296.15486 * 12 11 10 18 18 C 1.36939 * 125.64823 * 61.60541 * 17 12 11 19 19 H 1.08005 * 119.99856 * 324.44640 * 18 17 12 20 20 C 1.38815 * 120.00176 * 144.44077 * 18 17 12 21 21 N 1.31619 * 119.99708 * 162.70661 * 20 18 17 22 22 Si 1.86801 * 119.99944 * 342.70425 * 20 18 17 23 23 H 1.48499 * 109.46843 * 95.09282 * 22 20 18 24 24 H 1.48496 * 109.47006 * 215.09090 * 22 20 18 25 25 H 1.48499 * 109.46984 * 335.09352 * 22 20 18 26 26 H 1.08998 * 109.46830 * 300.00943 * 1 2 3 27 27 H 1.09005 * 109.46472 * 60.00540 * 1 2 3 28 28 H 1.08991 * 109.47382 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47343 * 239.99177 * 2 1 3 30 30 H 1.09005 * 109.46472 * 119.99460 * 2 1 3 31 31 H 1.08003 * 122.44926 * 0.04590 * 4 3 2 32 32 H 1.07996 * 124.52224 * 179.97438 * 5 4 3 33 33 H 0.96997 * 120.00450 * 0.02562 * 10 8 7 34 34 H 1.08993 * 109.47079 * 53.22524 * 11 10 8 35 35 H 1.09000 * 109.46820 * 293.22870 * 11 10 8 36 36 H 1.09001 * 110.72107 * 259.97130 * 14 12 11 37 37 H 1.09002 * 110.71515 * 23.24875 * 14 12 11 38 38 H 1.08994 * 111.00440 * 82.57250 * 15 14 12 39 39 H 1.09001 * 111.00501 * 206.42673 * 15 14 12 40 40 H 1.09002 * 110.36858 * 278.17254 * 16 15 14 41 41 H 1.08993 * 110.36858 * 155.84826 * 16 15 14 42 42 H 0.97003 * 119.99729 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3793 2.0997 -1.1440 5 6 2.8054 3.3537 -0.9527 6 16 2.7865 3.7585 0.7046 7 6 2.1891 2.1623 1.1370 8 6 1.8996 1.7028 2.4985 9 8 1.4833 0.5743 2.6842 10 7 2.0954 2.5295 3.5447 11 6 1.8065 2.0700 4.9055 12 6 2.2691 3.1275 5.9098 13 1 1.7798 4.0784 5.6984 14 6 1.9317 2.6714 7.3450 15 6 3.1661 3.1425 8.1585 16 6 4.3120 2.9252 7.1390 17 7 3.7288 3.2849 5.8336 18 6 4.4307 3.6966 4.7322 19 1 4.1047 3.4061 3.7444 20 6 5.5613 4.4874 4.8853 21 7 6.4219 4.6037 3.8963 22 14 5.8612 5.3865 6.4950 23 1 6.7510 4.5703 7.3595 24 1 6.5049 6.6957 6.2182 25 1 4.5661 5.6080 7.1870 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.3124 1.6537 -2.1254 32 1 3.1159 4.0218 -1.7424 33 1 2.4275 3.4287 3.3967 34 1 2.3347 1.1352 5.0931 35 1 0.7340 1.9096 5.0148 36 1 1.0252 3.1602 7.7019 37 1 1.8303 1.5871 7.3912 38 1 3.0777 4.1948 8.4284 39 1 3.3091 2.5242 9.0447 40 1 4.6270 1.8817 7.1391 41 1 5.1545 3.5767 7.3706 42 1 7.2117 5.1566 4.0031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028331724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:48 Heat of formation + Delta-G solvation = -0.105285 kcal Electronic energy + Delta-G solvation = -23798.061609 eV Core-core repulsion = 20483.545850 eV Total energy + Delta-G solvation = -3314.515758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.97649 -39.67363 -38.67598 -35.53382 -34.61449 -33.61712 -31.76660 -31.51531 -29.86413 -26.87900 -26.21694 -25.16747 -23.27806 -22.67446 -21.76695 -21.37180 -19.97043 -19.06711 -18.51828 -17.91288 -16.88102 -16.75739 -16.52098 -15.99969 -15.72894 -15.33782 -14.99518 -14.87065 -14.62952 -14.45699 -14.21321 -13.95491 -13.72063 -13.62106 -13.25424 -13.03847 -12.95107 -12.81258 -12.62132 -12.35564 -12.25993 -12.10431 -11.85798 -11.73445 -11.55860 -11.51618 -11.37091 -10.84745 -10.66123 -10.07324 -9.64938 -9.38876 -8.74374 -8.13465 -5.54603 -0.40452 0.58773 1.04372 1.31670 1.41060 1.46229 1.52125 2.17605 2.35507 2.46289 3.07912 3.36171 3.86517 3.91985 3.92826 3.98750 4.12435 4.19915 4.31853 4.36320 4.46891 4.50104 4.56723 4.66004 4.73432 4.80894 4.84337 4.92120 4.98968 5.00190 5.09372 5.12306 5.14149 5.30768 5.35128 5.44013 5.47781 5.54250 5.59330 5.90848 6.23154 6.54508 6.84267 7.19671 7.57591 8.23497 9.03555 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.005075 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.883047 B = 5515.670212 C = 6860.256140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.026 4.026 4 C -0.153 4.153 5 C -0.220 4.220 6 S 0.195 5.805 7 C -0.303 4.303 8 C 0.579 3.421 9 O -0.566 6.566 10 N -0.711 5.711 11 C 0.122 3.878 12 C 0.138 3.862 13 H 0.049 0.951 14 C -0.109 4.109 15 C -0.125 4.125 16 C 0.105 3.895 17 N -0.618 5.618 18 C -0.242 4.242 19 H 0.073 0.927 20 C -0.021 4.021 21 N -0.944 5.944 22 Si 0.946 3.054 23 H -0.290 1.290 24 H -0.314 1.314 25 H -0.253 1.253 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.175 0.825 32 H 0.199 0.801 33 H 0.405 0.595 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.027 0.973 41 H 0.022 0.978 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.007 -3.059 -4.313 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.109 4.109 3 C -0.042 4.042 4 C -0.184 4.184 5 C -0.358 4.358 6 S 0.465 5.535 7 C -0.423 4.423 8 C 0.367 3.633 9 O -0.449 6.449 10 N -0.362 5.362 11 C -0.003 4.003 12 C 0.032 3.968 13 H 0.067 0.933 14 C -0.147 4.147 15 C -0.163 4.163 16 C -0.019 4.019 17 N -0.344 5.344 18 C -0.371 4.371 19 H 0.090 0.910 20 C -0.217 4.217 21 N -0.589 5.589 22 Si 0.777 3.223 23 H -0.218 1.218 24 H -0.243 1.243 25 H -0.177 1.177 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.192 0.808 32 H 0.216 0.784 33 H 0.243 0.757 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.045 0.955 41 H 0.040 0.960 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.730 -2.362 -3.436 12.449 hybrid contribution 0.935 -0.175 -0.349 1.013 sum -10.796 -2.537 -3.785 11.718 Atomic orbital electron populations 1.21528 0.93584 1.02222 1.01163 1.20396 0.97118 0.90185 1.03196 1.19837 0.95945 0.97780 0.90685 1.20126 1.04029 0.94173 1.00051 1.25692 1.06652 1.02053 1.01423 1.83757 1.59118 1.10435 1.00213 1.24514 1.18965 1.01424 0.97427 1.17257 0.77402 0.84769 0.83841 1.90684 1.48599 1.19689 1.85920 1.46199 1.65851 1.17310 1.06826 1.21939 0.99602 0.98132 0.80671 1.21515 0.84632 0.95741 0.94947 0.93283 1.22516 0.98556 1.02060 0.91588 1.22750 0.94225 1.01789 0.97536 1.22056 0.96064 0.96977 0.86779 1.44852 1.01722 1.77953 1.09915 1.18748 1.07503 1.24103 0.86733 0.90965 1.25988 0.97638 0.98597 0.99526 1.69933 1.12169 1.42215 1.34550 0.85788 0.78152 0.77050 0.81311 1.21794 1.24349 1.17718 0.94868 0.91564 0.91184 0.88870 0.91756 0.80761 0.78407 0.75689 0.93552 0.90501 0.87979 0.89840 0.91563 0.88241 0.95467 0.96040 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.78 71.98 0.70 -2.43 16 2 C -0.07 -1.93 5.50 29.85 0.16 -1.76 16 3 C -0.03 -0.80 5.16 -20.42 -0.11 -0.90 16 4 C -0.15 -3.74 9.96 21.09 0.21 -3.53 16 5 C -0.22 -5.44 10.92 66.81 0.73 -4.71 16 6 S 0.20 6.32 22.16 -56.49 -1.25 5.07 16 7 C -0.30 -10.92 6.45 24.08 0.16 -10.77 16 8 C 0.58 23.51 7.78 86.42 0.67 24.18 16 9 O -0.57 -24.44 13.69 -4.35 -0.06 -24.50 16 10 N -0.71 -28.33 4.33 -467.18 -2.02 -30.36 16 11 C 0.12 4.42 5.16 86.38 0.45 4.87 16 12 C 0.14 4.91 3.31 45.34 0.15 5.06 16 13 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 14 C -0.11 -2.90 6.48 31.78 0.21 -2.69 16 15 C -0.12 -3.67 7.09 31.99 0.23 -3.44 16 16 C 0.11 4.26 6.19 86.86 0.54 4.80 16 17 N -0.62 -27.73 2.68 -668.25 -1.79 -29.52 16 18 C -0.24 -12.92 9.51 84.03 0.80 -12.12 16 19 H 0.07 4.07 5.49 -2.91 -0.02 4.05 16 20 C -0.02 -1.18 5.45 84.86 0.46 -0.71 16 21 N -0.94 -57.04 13.97 21.65 0.30 -56.74 16 22 Si 0.95 45.76 24.78 68.60 1.70 47.46 16 23 H -0.29 -13.90 6.87 99.48 0.68 -13.22 16 24 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 25 H -0.25 -11.40 6.99 99.48 0.70 -10.70 16 26 H 0.03 0.98 7.60 -2.39 -0.02 0.96 16 27 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 2.00 8.12 -2.39 -0.02 1.98 16 30 H 0.06 2.19 6.33 -2.38 -0.02 2.17 16 31 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.20 3.47 8.06 -2.91 -0.02 3.44 16 33 H 0.41 16.77 5.42 -92.71 -0.50 16.27 16 34 H 0.05 1.87 8.11 -2.39 -0.02 1.85 16 35 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.08 2.03 7.85 -2.39 -0.02 2.01 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.02 0.96 3.18 -2.39 -0.01 0.95 16 42 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -68.89 342.98 2.73 -66.16 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.50 Total: 26.58 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 5.36 Total: -4.15 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -3.51 Total: -116.62 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.06 Total: -24.50 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.70 Total: 47.46 kcal Atomic # 16 Polarization: 6.32 SS G_CDS: -1.25 Total: 5.07 kcal Total: -68.89 2.73 -66.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028331724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.050 kcal (2) G-P(sol) polarization free energy of solvation -68.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds