Wall clock time and date at job start Tue Mar 31 2020 09:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46977 * 2 1 4 4 C 1.50700 * 109.47091 * 240.00037 * 2 1 3 5 5 O 1.21275 * 119.99787 * 240.00437 * 4 2 1 6 6 N 1.34771 * 119.99958 * 59.99308 * 4 2 1 7 7 C 1.46504 * 119.99982 * 180.02562 * 6 4 2 8 8 H 1.09001 * 112.84974 * 336.19903 * 7 6 4 9 9 C 1.53780 * 113.61454 * 107.50652 * 7 6 4 10 10 C 1.53780 * 87.08146 * 89.11550 * 9 7 6 11 11 H 1.09001 * 113.61864 * 270.88737 * 10 9 7 12 12 N 1.46501 * 113.68926 * 139.98959 * 10 9 7 13 13 C 1.36942 * 119.99719 * 107.46813 * 12 10 9 14 14 H 1.07997 * 119.99975 * 0.02562 * 13 12 10 15 15 C 1.38811 * 119.99573 * 180.02562 * 13 12 10 16 16 N 1.31621 * 120.00420 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99506 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47140 * 60.00190 * 17 15 13 19 19 H 1.48506 * 109.46880 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46982 * 299.99673 * 17 15 13 21 21 C 1.53776 * 113.61425 * 205.00373 * 7 6 4 22 22 C 1.50702 * 109.47302 * 119.99508 * 2 1 3 23 23 C 1.33388 * 125.20547 * 300.00655 * 22 2 1 24 24 C 1.38421 * 114.92066 * 180.29144 * 23 22 2 25 25 C 1.33395 * 114.92147 * 359.48238 * 24 23 22 26 26 S 1.75885 * 125.19995 * 120.02010 * 22 2 1 27 27 H 1.09004 * 109.47102 * 300.00142 * 1 2 3 28 28 H 1.08997 * 109.47294 * 59.99958 * 1 2 3 29 29 H 1.08998 * 109.47493 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46895 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47041 * 299.99961 * 3 2 1 32 32 H 1.08990 * 109.47345 * 59.99942 * 3 2 1 33 33 H 0.96996 * 120.00495 * 0.02562 * 6 4 2 34 34 H 1.08999 * 113.61665 * 203.67011 * 9 7 6 35 35 H 1.08999 * 113.61332 * 334.57337 * 9 7 6 36 36 H 0.97000 * 120.00365 * 287.46589 * 12 10 9 37 37 H 0.96998 * 119.99916 * 179.97438 * 16 15 13 38 38 H 1.09000 * 113.61628 * 25.43937 * 21 7 6 39 39 H 1.09002 * 113.61147 * 156.25202 * 21 7 6 40 40 H 1.08002 * 122.53671 * 0.02562 * 23 22 2 41 41 H 1.08001 * 122.54223 * 179.72513 * 24 23 22 42 42 H 1.07998 * 125.20353 * 180.21324 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7066 -0.2500 -2.4545 7 6 2.1945 -0.9410 -3.6507 8 1 3.0997 -1.5194 -3.4658 9 6 1.1024 -1.7244 -4.3981 10 6 0.8291 -0.4346 -5.1896 11 1 0.0928 0.2180 -4.7203 12 7 0.5630 -0.6621 -6.6121 13 6 -0.7071 -0.5159 -7.1030 14 1 -1.5123 -0.2324 -6.4416 15 6 -0.9593 -0.7320 -8.4508 16 7 0.0223 -1.0770 -9.2570 17 14 -2.6916 -0.5319 -9.1206 18 1 -3.1547 0.8597 -8.8876 19 1 -2.6950 -0.8178 -10.5778 20 1 -3.6023 -1.4791 -8.4288 21 6 2.2841 -0.0364 -4.8911 22 6 2.0324 -0.7103 1.2305 23 6 1.7749 -0.3462 2.4876 24 6 2.3506 -1.1492 3.4570 25 6 3.0668 -2.1718 2.9872 26 16 3.0483 -2.1461 1.2286 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.1492 0.5388 -2.5436 34 1 1.4905 -2.5385 -5.0102 35 1 0.2719 -2.0305 -3.7620 36 1 1.2863 -0.9163 -7.2063 37 1 -0.1541 -1.2284 -10.1987 38 1 2.4078 1.0201 -4.6530 39 1 2.9964 -0.3882 -5.6375 40 1 1.1669 0.5127 2.7306 41 1 2.2260 -0.9642 4.5138 42 1 3.5830 -2.9011 3.5938 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020463536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:14 Heat of formation + Delta-G solvation = 26.366607 kcal Electronic energy + Delta-G solvation = -22929.839564 eV Core-core repulsion = 19616.471714 eV Total energy + Delta-G solvation = -3313.367851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.60192 -38.59398 -37.66422 -35.11882 -34.08649 -32.52663 -29.92181 -28.52401 -27.65138 -25.19637 -25.15066 -24.50739 -23.11906 -22.04009 -20.55232 -19.12832 -18.79541 -17.63937 -17.07973 -16.55018 -15.68807 -15.40711 -15.24774 -14.91745 -14.53622 -13.96936 -13.95950 -13.58638 -13.55963 -13.04291 -12.73221 -12.67534 -12.51077 -12.35547 -12.15382 -12.04750 -11.91205 -11.68118 -11.54130 -11.31512 -10.92793 -10.86481 -10.63808 -10.38620 -10.27443 -9.96349 -9.61209 -9.42565 -8.98496 -8.88826 -8.64839 -8.27841 -7.02593 -5.83399 -3.12791 1.03792 1.78916 2.27072 2.45509 2.74191 3.09738 3.39704 3.44453 3.45434 4.21377 4.45206 4.54324 4.72456 4.75907 4.97524 5.07601 5.15095 5.26666 5.33477 5.38269 5.41695 5.43246 5.45372 5.52976 5.60700 5.77840 5.81746 5.86472 5.88936 6.06503 6.09967 6.20065 6.26756 6.29902 6.41879 6.48538 6.56911 6.63285 7.01059 7.43595 7.63046 8.07995 8.34856 9.46110 10.03034 10.37280 11.38765 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.030448 B = 0.002729 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.388208 B =10259.417745 C =10537.526994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.010 4.010 3 C -0.135 4.135 4 C 0.521 3.479 5 O -0.524 6.524 6 N -0.695 5.695 7 C 0.113 3.887 8 H 0.097 0.903 9 C -0.175 4.175 10 C 0.167 3.833 11 H 0.073 0.927 12 N -0.712 5.712 13 C -0.247 4.247 14 H 0.070 0.930 15 C -0.011 4.011 16 N -0.932 5.932 17 Si 0.908 3.092 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.159 4.159 22 C -0.187 4.187 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.276 4.276 26 S 0.230 5.770 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.402 0.598 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.107 3.876 23.464 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.015 4.015 3 C -0.194 4.194 4 C 0.307 3.693 5 O -0.403 6.403 6 N -0.344 5.344 7 C 0.008 3.992 8 H 0.115 0.885 9 C -0.218 4.218 10 C 0.055 3.945 11 H 0.091 0.909 12 N -0.349 5.349 13 C -0.378 4.378 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.579 5.579 17 Si 0.738 3.262 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.199 4.199 22 C -0.305 4.305 23 C -0.168 4.168 24 C -0.177 4.177 25 C -0.411 4.411 26 S 0.496 5.504 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.237 0.763 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.075 2.268 22.310 23.233 hybrid contribution -1.651 1.222 0.598 2.139 sum 4.424 3.490 22.908 23.591 Atomic orbital electron populations 1.21899 0.90915 1.03427 1.03220 1.19220 0.97418 0.95760 0.89110 1.21892 1.02079 0.92188 1.03200 1.20434 0.79822 0.84230 0.84819 1.90411 1.38895 1.26682 1.84273 1.45610 1.52506 1.31365 1.04928 1.21890 0.98511 0.95586 0.83199 0.88459 1.24307 0.97631 1.00781 0.99035 1.21611 0.92706 0.93588 0.86621 0.90912 1.42389 1.08519 1.81248 1.02783 1.19236 0.86467 1.39815 0.92310 0.91173 1.24772 0.97560 1.02152 0.96270 1.69646 1.30550 1.53328 1.04394 0.86267 0.84115 0.77854 0.77929 1.21208 1.21636 1.21202 1.23864 1.01076 0.98862 0.96079 1.24184 1.06890 1.02614 0.96812 1.19846 1.03706 1.02168 0.91078 1.19950 1.01137 0.96536 1.00081 1.26685 1.06570 1.03674 1.04203 1.85592 1.46154 1.23270 0.95420 0.90924 0.91224 0.91577 0.91686 0.91318 0.90909 0.76288 0.89504 0.92393 0.77985 0.93329 0.91745 0.88946 0.85076 0.85631 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.23 37.16 0.31 -0.85 16 2 C -0.01 -0.10 0.76 -156.81 -0.12 -0.22 16 3 C -0.14 -1.06 8.23 37.16 0.31 -0.76 16 4 C 0.52 6.63 6.47 -10.99 -0.07 6.56 16 5 O -0.52 -8.22 12.45 5.56 0.07 -8.15 16 6 N -0.70 -8.30 5.05 -53.02 -0.27 -8.57 16 7 C 0.11 1.62 4.32 -67.12 -0.29 1.33 16 8 H 0.10 1.47 7.46 -51.93 -0.39 1.08 16 9 C -0.18 -2.97 7.68 -25.92 -0.20 -3.17 16 10 C 0.17 3.07 4.35 -67.12 -0.29 2.78 16 11 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 12 N -0.71 -17.16 5.40 -52.64 -0.28 -17.45 16 13 C -0.25 -6.67 9.97 -15.06 -0.15 -6.82 16 14 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 15 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 17 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 21 C -0.16 -2.39 7.58 -25.92 -0.20 -2.59 16 22 C -0.19 -2.11 5.12 -36.00 -0.18 -2.29 16 23 C -0.14 -1.37 9.31 -41.21 -0.38 -1.76 16 24 C -0.15 -1.48 10.18 -41.21 -0.42 -1.90 16 25 C -0.28 -2.95 11.23 29.04 0.33 -2.62 16 26 S 0.23 2.89 19.58 -107.50 -2.11 0.78 16 27 H 0.07 0.50 7.94 -51.93 -0.41 0.09 16 28 H 0.07 0.51 7.56 -51.93 -0.39 0.12 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.45 7.56 -51.93 -0.39 0.05 16 32 H 0.07 0.47 7.94 -51.93 -0.41 0.06 16 33 H 0.40 3.95 7.54 -40.82 -0.31 3.64 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.39 9.93 7.93 -40.82 -0.32 9.60 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.44 8.12 -51.93 -0.42 1.02 16 40 H 0.13 1.04 8.01 -52.49 -0.42 0.62 16 41 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -31.12 356.47 -9.38 -40.50 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.40 Total: 10.23 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.46 Total: -12.71 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.17 Total: -52.92 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.07 Total: -8.15 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.11 Total: 0.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.12 -9.38 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020463536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.864 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds