Wall clock time and date at job start Tue Mar 31 2020 10:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47365 * 2 1 4 4 N 1.46497 * 109.46963 * 120.00547 * 2 1 3 5 5 C 1.34780 * 119.99834 * 274.99447 * 4 2 1 6 6 O 1.21707 * 119.99875 * 0.02562 * 5 4 2 7 7 C 1.46576 * 120.00020 * 179.97438 * 5 4 2 8 8 C 1.36650 * 125.45858 * 180.02562 * 7 5 4 9 9 C 1.37473 * 113.29905 * 180.29149 * 8 7 5 10 10 C 1.33813 * 115.09609 * 359.49696 * 9 8 7 11 11 S 1.70615 * 110.95825 * 0.48847 * 10 9 8 12 12 C 1.53002 * 109.47017 * 240.00134 * 2 1 3 13 13 H 1.08997 * 109.49909 * 184.93883 * 12 2 1 14 14 C 1.53042 * 109.49997 * 64.84247 * 12 2 1 15 15 C 1.53034 * 109.54198 * 178.68506 * 14 12 2 16 16 C 1.53194 * 109.31427 * 61.35983 * 15 14 12 17 17 N 1.46930 * 108.77542 * 305.36714 * 16 15 14 18 18 C 1.36937 * 120.63213 * 233.58162 * 17 16 15 19 19 H 1.07999 * 120.00048 * 152.30880 * 18 17 16 20 20 C 1.38812 * 120.00101 * 332.31673 * 18 17 16 21 21 N 1.31625 * 119.99698 * 342.59540 * 20 18 17 22 22 Si 1.86796 * 120.00353 * 162.59639 * 20 18 17 23 23 H 1.48504 * 109.47110 * 94.34400 * 22 20 18 24 24 H 1.48492 * 109.47216 * 214.34553 * 22 20 18 25 25 H 1.48501 * 109.46805 * 334.34826 * 22 20 18 26 26 C 1.46922 * 118.73606 * 53.61176 * 17 16 15 27 27 H 1.08993 * 109.47440 * 300.00020 * 1 2 3 28 28 H 1.09004 * 109.46743 * 59.99589 * 1 2 3 29 29 H 1.08997 * 109.47242 * 179.97438 * 1 2 3 30 30 H 0.96996 * 120.00640 * 95.00245 * 4 2 1 31 31 H 1.08007 * 123.34813 * 0.02562 * 8 7 5 32 32 H 1.07997 * 122.44720 * 179.73642 * 9 8 7 33 33 H 1.08009 * 124.51849 * 180.17976 * 10 9 8 34 34 H 1.09000 * 109.45550 * 298.70203 * 14 12 2 35 35 H 1.09000 * 109.45813 * 58.66160 * 14 12 2 36 36 H 1.09004 * 109.49463 * 301.41244 * 15 14 12 37 37 H 1.08993 * 109.52948 * 181.33409 * 15 14 12 38 38 H 1.09002 * 109.58815 * 185.58183 * 16 15 14 39 39 H 1.08997 * 109.58496 * 65.15503 * 16 15 14 40 40 H 0.97005 * 119.99927 * 180.02562 * 21 20 18 41 41 H 1.08999 * 109.58445 * 186.60378 * 26 17 16 42 42 H 1.09000 * 109.59165 * 66.17357 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8573 1.1624 2.4119 7 6 2.6351 -0.7096 3.5540 8 6 2.8074 -0.1394 4.7838 9 6 3.2847 -1.0171 5.7281 10 6 3.4866 -2.2658 5.2916 11 16 3.0931 -2.4051 3.6373 12 6 2.0400 -0.7212 -1.2493 13 1 3.1263 -0.7988 -1.2066 14 6 1.6320 0.0666 -2.4963 15 6 2.1697 -0.6365 -3.7447 16 6 1.5607 -2.0391 -3.8381 17 7 1.8248 -2.7540 -2.5819 18 6 2.4274 -3.9836 -2.5923 19 1 3.0118 -4.3057 -1.7431 20 6 2.2871 -4.8160 -3.6942 21 7 1.3256 -4.5972 -4.5661 22 14 3.4628 -6.2467 -3.9398 23 1 2.8704 -7.4792 -3.3609 24 1 3.7021 -6.4471 -5.3916 25 1 4.7506 -5.9509 -3.2621 26 6 1.4294 -2.1247 -1.3145 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.2490 -1.6318 1.1525 31 1 2.5941 0.8988 4.9921 32 1 3.4787 -0.7214 6.7485 33 1 3.8546 -3.0761 5.9036 34 1 0.5448 0.1224 -2.5509 35 1 2.0449 1.0739 -2.4406 36 1 3.2550 -0.7148 -3.6791 37 1 1.8994 -0.0627 -4.6310 38 1 2.0145 -2.5799 -4.6686 39 1 0.4849 -1.9606 -3.9947 40 1 1.2274 -5.1791 -5.3360 41 1 1.7966 -2.7220 -0.4799 42 1 0.3429 -2.0532 -1.2653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025329021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:15 Heat of formation + Delta-G solvation = 8.868605 kcal Electronic energy + Delta-G solvation = -23396.911925 eV Core-core repulsion = 20082.785304 eV Total energy + Delta-G solvation = -3314.126621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.97643 -38.29852 -37.41087 -35.17134 -33.07318 -31.37480 -30.46920 -29.67126 -28.05962 -25.37292 -25.30960 -23.74503 -22.26870 -21.48728 -20.31102 -19.49094 -18.81839 -18.31619 -16.73826 -16.15334 -15.87858 -15.23972 -14.99937 -14.83381 -14.39726 -13.91836 -13.71495 -13.47025 -13.22176 -13.01927 -12.94779 -12.58013 -12.46670 -12.32526 -12.23100 -11.80471 -11.62645 -11.13016 -11.01365 -10.92014 -10.57948 -10.48627 -10.21630 -10.16808 -9.99619 -9.87294 -9.62225 -9.40816 -9.16048 -8.90088 -8.77811 -8.47642 -6.68184 -5.81006 -3.23076 0.35202 1.30294 1.71182 2.23643 3.18126 3.19597 3.34960 3.42815 3.44713 4.46431 4.71029 4.80453 5.05131 5.11070 5.21892 5.26775 5.38425 5.41475 5.56613 5.68227 5.70370 5.73780 5.85377 5.95750 6.00486 6.10690 6.14775 6.21844 6.24633 6.33555 6.47886 6.56913 6.61870 6.69886 6.77069 6.86172 6.96914 7.39150 7.52299 7.66045 7.76862 8.18242 8.42421 9.18885 9.82632 10.39301 11.27236 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.014796 B = 0.004057 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.896465 B = 6899.971471 C = 8474.572873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 H 0.084 0.916 4 N -0.715 5.715 5 C 0.589 3.411 6 O -0.536 6.536 7 C -0.264 4.264 8 C -0.061 4.061 9 C -0.152 4.152 10 C -0.235 4.235 11 S 0.213 5.787 12 C -0.114 4.114 13 H 0.072 0.928 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.170 3.830 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.151 3.849 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.400 0.600 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.017 0.983 40 H 0.253 0.747 41 H 0.046 0.954 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.439 6.962 15.480 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 H 0.102 0.898 4 N -0.366 5.366 5 C 0.375 3.625 6 O -0.415 6.415 7 C -0.385 4.385 8 C -0.095 4.095 9 C -0.183 4.183 10 C -0.373 4.373 11 S 0.481 5.519 12 C -0.135 4.135 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.182 4.182 16 C 0.044 3.956 17 N -0.313 5.313 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.729 3.271 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.024 3.976 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.235 0.765 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.186 0.814 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.036 0.964 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.230 6.468 14.288 15.842 hybrid contribution 0.729 -0.173 1.017 1.263 sum 2.959 6.295 15.305 16.812 Atomic orbital electron populations 1.22267 0.95232 1.02838 1.02021 1.21086 0.94318 0.96777 0.83205 0.89767 1.46097 1.66741 1.14102 1.09662 1.16955 0.77489 0.86156 0.81901 1.90806 1.50943 1.15031 1.84718 1.24778 1.15675 0.98799 0.99244 1.20785 0.96910 1.01400 0.90380 1.20034 1.04229 0.92521 1.01522 1.25368 1.08652 1.02258 1.01037 1.83356 1.58212 1.05806 1.04565 1.21974 1.00975 0.98082 0.92457 0.90910 1.21415 1.00549 0.97217 0.94621 1.22179 1.00618 0.99593 0.95773 1.20794 0.96600 0.88014 0.90185 1.44023 1.69779 1.17610 0.99889 1.19155 1.23574 0.92196 1.03437 0.91788 1.25014 0.97404 0.97627 0.99460 1.70044 1.30203 1.39638 1.14631 0.86327 0.81057 0.82451 0.77220 1.21465 1.21554 1.20431 1.20999 0.96240 0.90321 0.90042 0.92803 0.91235 0.91514 0.76501 0.83009 0.83854 0.81432 0.92183 0.93484 0.92800 0.93194 0.89566 0.96448 0.93649 0.93585 0.95562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 8.76 37.16 0.33 -2.02 16 2 C 0.15 2.23 2.35 -67.93 -0.16 2.07 16 3 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 4 N -0.72 -10.16 5.01 -55.15 -0.28 -10.43 16 5 C 0.59 8.77 7.75 -12.90 -0.10 8.67 16 6 O -0.54 -9.45 16.50 5.18 0.09 -9.37 16 7 C -0.26 -3.30 6.45 -36.80 -0.24 -3.54 16 8 C -0.06 -0.68 10.01 -40.43 -0.40 -1.08 16 9 C -0.15 -1.35 10.15 -41.41 -0.42 -1.77 16 10 C -0.24 -2.02 10.92 29.18 0.32 -1.70 16 11 S 0.21 2.17 22.16 -107.50 -2.38 -0.22 16 12 C -0.11 -1.89 2.27 -90.50 -0.21 -2.09 16 13 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.10 -1.63 4.89 -26.69 -0.13 -1.76 16 15 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 16 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 17 N -0.59 -14.24 2.99 -172.32 -0.52 -14.75 16 18 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 19 H 0.06 1.66 7.89 -52.49 -0.41 1.24 16 20 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 21 N -0.90 -25.65 11.19 55.49 0.62 -25.03 16 22 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.15 2.95 5.26 -3.71 -0.02 2.93 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.93 6.59 -51.93 -0.34 0.59 16 29 H 0.07 0.97 6.23 -51.93 -0.32 0.65 16 30 H 0.40 5.35 6.38 -40.82 -0.26 5.09 16 31 H 0.15 1.59 8.06 -52.48 -0.42 1.16 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.06 0.96 6.63 -51.93 -0.34 0.62 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.05 0.87 6.74 -51.93 -0.35 0.52 16 42 H 0.03 0.53 6.06 -51.93 -0.31 0.21 16 LS Contribution 344.94 15.07 5.20 5.20 Total: -1.00 -30.48 344.94 -9.74 -40.22 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.00 Total: 4.27 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.45 Total: -6.06 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.17 Total: -50.21 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.38 Total: -0.22 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.48 -9.74 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025329021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.092 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds