Wall clock time and date at job start Tue Mar 31 2020 10:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47365 * 2 1 4 4 N 1.46497 * 109.46963 * 120.00547 * 2 1 3 5 5 C 1.34780 * 119.99834 * 274.99447 * 4 2 1 6 6 O 1.21707 * 119.99875 * 0.02562 * 5 4 2 7 7 C 1.46576 * 120.00020 * 179.97438 * 5 4 2 8 8 C 1.36650 * 125.45858 * 180.02562 * 7 5 4 9 9 C 1.37473 * 113.29905 * 180.29149 * 8 7 5 10 10 C 1.33813 * 115.09609 * 359.49696 * 9 8 7 11 11 S 1.70615 * 110.95825 * 0.48847 * 10 9 8 12 12 C 1.53002 * 109.47017 * 240.00134 * 2 1 3 13 13 H 1.08997 * 109.49909 * 184.93883 * 12 2 1 14 14 C 1.53042 * 109.49997 * 64.84247 * 12 2 1 15 15 C 1.53034 * 109.54198 * 178.68506 * 14 12 2 16 16 C 1.53194 * 109.31427 * 61.35983 * 15 14 12 17 17 N 1.46930 * 108.77542 * 305.36714 * 16 15 14 18 18 C 1.36937 * 120.63213 * 233.58162 * 17 16 15 19 19 H 1.07999 * 120.00048 * 152.30880 * 18 17 16 20 20 C 1.38812 * 120.00101 * 332.31673 * 18 17 16 21 21 N 1.31625 * 119.99698 * 342.59540 * 20 18 17 22 22 Si 1.86796 * 120.00353 * 162.59639 * 20 18 17 23 23 H 1.48504 * 109.47110 * 94.34400 * 22 20 18 24 24 H 1.48492 * 109.47216 * 214.34553 * 22 20 18 25 25 H 1.48501 * 109.46805 * 334.34826 * 22 20 18 26 26 C 1.46922 * 118.73606 * 53.61176 * 17 16 15 27 27 H 1.08993 * 109.47440 * 300.00020 * 1 2 3 28 28 H 1.09004 * 109.46743 * 59.99589 * 1 2 3 29 29 H 1.08997 * 109.47242 * 179.97438 * 1 2 3 30 30 H 0.96996 * 120.00640 * 95.00245 * 4 2 1 31 31 H 1.08007 * 123.34813 * 0.02562 * 8 7 5 32 32 H 1.07997 * 122.44720 * 179.73642 * 9 8 7 33 33 H 1.08009 * 124.51849 * 180.17976 * 10 9 8 34 34 H 1.09000 * 109.45550 * 298.70203 * 14 12 2 35 35 H 1.09000 * 109.45813 * 58.66160 * 14 12 2 36 36 H 1.09004 * 109.49463 * 301.41244 * 15 14 12 37 37 H 1.08993 * 109.52948 * 181.33409 * 15 14 12 38 38 H 1.09002 * 109.58815 * 185.58183 * 16 15 14 39 39 H 1.08997 * 109.58496 * 65.15503 * 16 15 14 40 40 H 0.97005 * 119.99927 * 180.02562 * 21 20 18 41 41 H 1.08999 * 109.58445 * 186.60378 * 26 17 16 42 42 H 1.09000 * 109.59165 * 66.17357 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8573 1.1624 2.4119 7 6 2.6351 -0.7096 3.5540 8 6 2.8074 -0.1394 4.7838 9 6 3.2847 -1.0171 5.7281 10 6 3.4866 -2.2658 5.2916 11 16 3.0931 -2.4051 3.6373 12 6 2.0400 -0.7212 -1.2493 13 1 3.1263 -0.7988 -1.2066 14 6 1.6320 0.0666 -2.4963 15 6 2.1697 -0.6365 -3.7447 16 6 1.5607 -2.0391 -3.8381 17 7 1.8248 -2.7540 -2.5819 18 6 2.4274 -3.9836 -2.5923 19 1 3.0118 -4.3057 -1.7431 20 6 2.2871 -4.8160 -3.6942 21 7 1.3256 -4.5972 -4.5661 22 14 3.4628 -6.2467 -3.9398 23 1 2.8704 -7.4792 -3.3609 24 1 3.7021 -6.4471 -5.3916 25 1 4.7506 -5.9509 -3.2621 26 6 1.4294 -2.1247 -1.3145 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.2490 -1.6318 1.1525 31 1 2.5941 0.8988 4.9921 32 1 3.4787 -0.7214 6.7485 33 1 3.8546 -3.0761 5.9036 34 1 0.5448 0.1224 -2.5509 35 1 2.0449 1.0739 -2.4406 36 1 3.2550 -0.7148 -3.6791 37 1 1.8994 -0.0627 -4.6310 38 1 2.0145 -2.5799 -4.6686 39 1 0.4849 -1.9606 -3.9947 40 1 1.2274 -5.1791 -5.3360 41 1 1.7966 -2.7220 -0.4799 42 1 0.3429 -2.0532 -1.2653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025329021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:14 Heat of formation + Delta-G solvation = -8.911259 kcal Electronic energy + Delta-G solvation = -23397.682918 eV Core-core repulsion = 20082.785304 eV Total energy + Delta-G solvation = -3314.897614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15958 -39.61859 -38.36950 -36.65272 -34.71086 -32.76649 -32.26532 -30.64634 -29.40880 -27.21256 -26.30487 -24.98125 -23.89983 -22.77508 -21.65688 -20.56586 -19.92764 -19.48538 -18.60115 -17.20743 -16.98661 -16.70985 -16.31228 -16.05447 -15.82031 -15.56985 -15.06787 -14.73678 -14.70980 -14.14229 -13.99631 -13.94060 -13.69809 -13.58127 -13.33828 -13.17346 -13.04283 -12.76357 -12.67830 -12.28573 -12.06626 -11.95240 -11.88968 -11.69663 -11.51709 -11.33226 -11.11547 -11.02946 -10.50029 -10.25283 -9.82435 -9.55174 -8.63868 -7.84847 -5.29275 -0.48092 0.49997 0.95875 1.42972 1.47287 1.49797 1.58928 2.08454 2.16335 2.52791 3.30127 3.56148 3.77167 3.92980 3.98329 4.04257 4.14861 4.34782 4.37283 4.40384 4.47023 4.55592 4.64887 4.69145 4.84680 4.87089 4.94979 5.01538 5.05960 5.13803 5.19498 5.23122 5.28943 5.34797 5.37957 5.43871 5.49436 5.59420 5.69493 5.80788 6.38999 6.41935 7.05662 7.17438 7.89138 8.40779 9.21322 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.014796 B = 0.004057 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.896465 B = 6899.971471 C = 8474.572873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 H 0.084 0.916 4 N -0.714 5.714 5 C 0.589 3.411 6 O -0.571 6.571 7 C -0.302 4.302 8 C -0.057 4.057 9 C -0.157 4.157 10 C -0.218 4.218 11 S 0.213 5.787 12 C -0.099 4.099 13 H 0.065 0.935 14 C -0.097 4.097 15 C -0.131 4.131 16 C 0.174 3.826 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.068 0.932 20 C -0.049 4.049 21 N -0.934 5.934 22 Si 0.962 3.038 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.269 1.269 26 C 0.150 3.850 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.403 0.597 31 H 0.152 0.848 32 H 0.173 0.827 33 H 0.199 0.801 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.051 0.949 39 H -0.003 1.003 40 H 0.249 0.751 41 H 0.050 0.950 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 7.175 17.496 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.054 3.946 3 H 0.102 0.898 4 N -0.364 5.364 5 C 0.377 3.623 6 O -0.453 6.453 7 C -0.422 4.422 8 C -0.092 4.092 9 C -0.187 4.187 10 C -0.356 4.356 11 S 0.480 5.520 12 C -0.119 4.119 13 H 0.084 0.916 14 C -0.135 4.135 15 C -0.170 4.170 16 C 0.049 3.951 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.086 0.914 20 C -0.244 4.244 21 N -0.580 5.580 22 Si 0.791 3.209 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.194 1.194 26 C 0.025 3.975 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.239 0.761 31 H 0.169 0.831 32 H 0.190 0.810 33 H 0.216 0.784 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.015 0.985 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.294 6.681 16.327 17.946 hybrid contribution 0.396 -0.259 0.491 0.682 sum 3.690 6.422 16.818 18.377 Atomic orbital electron populations 1.22211 0.94639 1.02493 1.02414 1.20936 0.94642 0.96401 0.82632 0.89801 1.46063 1.66616 1.14214 1.09512 1.17262 0.76735 0.85811 0.82491 1.90773 1.52698 1.16472 1.85357 1.24630 1.18379 1.00291 0.98867 1.21040 0.95887 1.01844 0.90382 1.20280 1.03872 0.92157 1.02427 1.25784 1.06711 1.03003 1.00078 1.83354 1.58244 1.04189 1.06235 1.21754 1.00199 0.96286 0.93684 0.91632 1.21411 1.00974 0.98156 0.92946 1.22014 0.99907 0.97031 0.98084 1.20619 0.95265 0.90198 0.89046 1.44280 1.70007 1.17413 1.01475 1.19515 1.23234 0.93006 1.03410 0.91407 1.25734 0.98881 1.00283 0.99544 1.70195 1.31924 1.40788 1.15107 0.85342 0.79445 0.79552 0.76607 1.21260 1.22129 1.19395 1.21114 0.96274 0.91874 0.88261 0.92997 0.90254 0.92153 0.76083 0.83062 0.80998 0.78388 0.91640 0.90667 0.93306 0.91171 0.93083 0.98534 0.94227 0.93199 0.95751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 8.76 71.98 0.63 -3.72 16 2 C 0.16 4.52 2.35 44.99 0.11 4.62 16 3 H 0.08 2.47 7.58 -2.39 -0.02 2.45 16 4 N -0.71 -19.85 5.01 -446.59 -2.24 -22.09 16 5 C 0.59 17.35 7.75 86.42 0.67 18.02 16 6 O -0.57 -20.12 16.50 -4.37 -0.07 -20.20 16 7 C -0.30 -7.27 6.45 24.07 0.16 -7.12 16 8 C -0.06 -1.17 10.01 21.72 0.22 -0.96 16 9 C -0.16 -2.33 10.15 21.08 0.21 -2.12 16 10 C -0.22 -3.04 10.92 66.81 0.73 -2.31 16 11 S 0.21 3.97 22.16 -56.49 -1.25 2.72 16 12 C -0.10 -3.15 2.27 -10.71 -0.02 -3.17 16 13 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 14 C -0.10 -2.98 4.89 30.62 0.15 -2.83 16 15 C -0.13 -4.78 6.08 30.67 0.19 -4.59 16 16 C 0.17 8.26 5.31 86.36 0.46 8.72 16 17 N -0.61 -29.60 2.99 -699.09 -2.09 -31.69 16 18 C -0.26 -13.99 9.58 84.03 0.81 -13.19 16 19 H 0.07 3.50 7.89 -2.91 -0.02 3.47 16 20 C -0.05 -2.69 4.91 84.86 0.42 -2.27 16 21 N -0.93 -54.62 11.19 21.65 0.24 -54.38 16 22 Si 0.96 44.04 29.59 68.60 2.03 46.07 16 23 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C 0.15 5.83 5.26 86.36 0.45 6.29 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 2.00 6.59 -2.39 -0.02 1.98 16 29 H 0.06 1.71 6.23 -2.39 -0.01 1.70 16 30 H 0.40 10.59 6.38 -92.71 -0.59 9.99 16 31 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 32 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.06 1.97 6.63 -2.39 -0.02 1.95 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.05 2.77 6.04 -2.39 -0.01 2.75 16 39 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 41 H 0.05 1.86 6.74 -2.39 -0.02 1.85 16 42 H 0.02 0.97 6.06 -2.39 -0.01 0.96 16 Total: -1.00 -66.68 344.94 2.23 -64.45 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.44 Total: 19.74 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.17 Total: -4.62 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -4.09 Total: -108.16 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.07 Total: -20.20 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.25 Total: 2.72 kcal Total: -66.68 2.23 -64.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025329021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.541 kcal (2) G-P(sol) polarization free energy of solvation -66.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds