Wall clock time and date at job start Tue Mar 31 2020 10:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47625 * 2 1 4 4 C 1.50705 * 109.47355 * 239.99746 * 2 1 3 5 5 O 1.21283 * 120.00257 * 240.00374 * 4 2 1 6 6 N 1.34780 * 119.99767 * 59.99876 * 4 2 1 7 7 C 1.46501 * 119.99925 * 0.02562 * 6 4 2 8 8 C 1.46497 * 120.00243 * 180.02562 * 6 4 2 9 9 H 1.09009 * 110.77484 * 1.78719 * 8 6 4 10 10 C 1.55157 * 110.72107 * 125.02248 * 8 6 4 11 11 C 1.55130 * 101.48040 * 82.70194 * 10 8 6 12 12 N 1.47414 * 104.72512 * 37.29482 * 11 10 8 13 13 C 1.36939 * 125.65194 * 155.81753 * 12 11 10 14 14 H 1.07993 * 120.00580 * 199.01903 * 13 12 11 15 15 C 1.38816 * 119.99829 * 19.01779 * 13 12 11 16 16 N 1.31620 * 119.99663 * 28.47399 * 15 13 12 17 17 Si 1.86792 * 120.00468 * 208.75100 * 15 13 12 18 18 H 1.48497 * 109.47613 * 179.72519 * 17 15 13 19 19 H 1.48507 * 109.46954 * 299.72798 * 17 15 13 20 20 H 1.48503 * 109.47081 * 59.72317 * 17 15 13 21 21 C 1.47027 * 108.70504 * 335.55368 * 12 11 10 22 22 C 1.50707 * 109.47234 * 119.99980 * 2 1 3 23 23 C 1.38414 * 122.54008 * 240.00014 * 22 2 1 24 24 C 1.33391 * 114.92454 * 179.97438 * 23 22 2 25 25 S 1.75890 * 109.58818 * 0.02562 * 24 23 22 26 26 C 1.33387 * 122.53555 * 59.71064 * 22 2 1 27 27 H 1.08995 * 109.47039 * 300.00259 * 1 2 3 28 28 H 1.09002 * 109.47098 * 60.00212 * 1 2 3 29 29 H 1.09005 * 109.47423 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47215 * 269.99765 * 7 6 4 31 31 H 1.08999 * 109.47198 * 30.00030 * 7 6 4 32 32 H 1.09002 * 109.46904 * 149.99534 * 7 6 4 33 33 H 1.09004 * 111.00422 * 200.93460 * 10 8 6 34 34 H 1.08997 * 111.00427 * 324.79243 * 10 8 6 35 35 H 1.09005 * 110.49412 * 278.45036 * 11 10 8 36 36 H 1.09005 * 110.34397 * 156.06429 * 11 10 8 37 37 H 0.96999 * 120.00452 * 5.95980 * 16 15 13 38 38 H 1.08993 * 109.88265 * 120.70326 * 21 12 11 39 39 H 1.08996 * 109.88175 * 241.71751 * 21 12 11 40 40 H 1.08008 * 122.54091 * 359.95145 * 23 22 2 41 41 H 1.07992 * 125.20468 * 179.97438 * 24 23 22 42 42 H 1.08003 * 125.20412 * 0.02562 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6966 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 0.8649 0.9414 -2.5890 8 6 2.1946 -0.9409 -3.6508 9 1 2.7775 -1.8209 -3.3783 10 6 1.0143 -1.3303 -4.5796 11 6 0.7799 -0.0059 -5.3527 12 7 2.1297 0.5466 -5.5673 13 6 2.4871 1.4164 -6.5627 14 1 3.5263 1.5290 -6.8341 15 6 1.5136 2.1533 -7.2231 16 7 0.3969 2.4727 -6.6038 17 14 1.7848 2.6851 -8.9931 18 1 0.6027 3.4484 -9.4675 19 1 2.9934 3.5445 -9.0721 20 1 1.9743 1.4849 -9.8470 21 6 3.0272 0.0142 -4.5316 22 6 2.0323 -0.7104 1.2305 23 6 2.8305 -0.0890 2.1752 24 6 3.1875 -0.8594 3.2040 25 16 2.4982 -2.4654 3.0051 26 6 1.7367 -1.9841 1.4945 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.1832 0.6439 -2.6222 31 1 1.0288 1.6002 -1.7362 32 1 1.1228 1.4666 -3.5087 33 1 1.2989 -2.1363 -5.2560 34 1 0.1333 -1.6027 -3.9985 35 1 0.1785 0.6818 -4.7581 36 1 0.2954 -0.2057 -6.3085 37 1 0.2896 2.2692 -5.6615 38 1 3.8478 -0.5316 -4.9971 39 1 3.4212 0.8310 -3.9269 40 1 3.1412 0.9416 2.0860 41 1 3.8059 -0.5454 4.0318 42 1 1.1254 -2.6228 0.8742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033407939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:13 Heat of formation + Delta-G solvation = 36.869703 kcal Electronic energy + Delta-G solvation = -23862.957544 eV Core-core repulsion = 20550.045142 eV Total energy + Delta-G solvation = -3312.912402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.45696 -38.47825 -37.17933 -34.75457 -33.30733 -31.91028 -29.24760 -28.83610 -28.06047 -26.48026 -25.27609 -24.21409 -23.03889 -20.83305 -20.24650 -19.00326 -18.42961 -17.90898 -17.57955 -16.77931 -16.09826 -15.24563 -15.08962 -14.52200 -14.22293 -13.92309 -13.73746 -13.24467 -13.19315 -13.08095 -12.86640 -12.71493 -12.49693 -12.15738 -12.01854 -11.95060 -11.80542 -11.52722 -11.36565 -11.02940 -10.79629 -10.75766 -10.63260 -10.42299 -10.27475 -10.02962 -9.57952 -9.41739 -8.82732 -8.46328 -8.43047 -8.34024 -6.96903 -6.15275 -3.20354 0.96961 1.59415 1.90759 2.57418 2.78720 3.27914 3.47966 3.52359 3.69593 4.55272 4.57743 4.61249 4.91018 5.04780 5.11859 5.19723 5.22236 5.25862 5.33531 5.43491 5.52073 5.58768 5.59912 5.64665 5.71294 5.77501 5.91445 5.96368 6.05286 6.09912 6.17564 6.29379 6.34703 6.41728 6.45602 6.61043 6.88022 6.94931 6.99651 7.64091 7.78443 8.35886 8.45352 8.96914 9.76279 10.32576 11.17011 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.035786 B = 0.003075 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.251219 B = 9102.655582 C = 9221.353220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.049 4.049 3 H 0.103 0.897 4 C 0.517 3.483 5 O -0.541 6.541 6 N -0.593 5.593 7 C 0.066 3.934 8 C 0.127 3.873 9 H 0.102 0.898 10 C -0.145 4.145 11 C 0.136 3.864 12 N -0.600 5.600 13 C -0.337 4.337 14 H 0.063 0.937 15 C -0.023 4.023 16 N -0.913 5.913 17 Si 1.063 2.937 18 H -0.285 1.285 19 H -0.293 1.293 20 H -0.294 1.294 21 C 0.126 3.874 22 C -0.089 4.089 23 C -0.123 4.123 24 C -0.218 4.218 25 S 0.084 5.916 26 C -0.171 4.171 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.048 0.952 37 H 0.266 0.734 38 H 0.034 0.966 39 H 0.028 0.972 40 H 0.139 0.861 41 H 0.162 0.838 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.449 -5.827 18.004 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.073 4.073 3 H 0.121 0.879 4 C 0.304 3.696 5 O -0.418 6.418 6 N -0.325 5.325 7 C -0.077 4.077 8 C 0.023 3.977 9 H 0.120 0.880 10 C -0.185 4.185 11 C 0.011 3.989 12 N -0.328 5.328 13 C -0.465 4.465 14 H 0.081 0.919 15 C -0.225 4.225 16 N -0.554 5.554 17 Si 0.893 3.107 18 H -0.211 1.211 19 H -0.220 1.220 20 H -0.221 1.221 21 C 0.000 4.000 22 C -0.101 4.101 23 C -0.153 4.153 24 C -0.353 4.353 25 S 0.347 5.653 26 C -0.307 4.307 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.157 0.843 41 H 0.180 0.820 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.689 -6.869 17.534 18.844 hybrid contribution 0.814 0.668 0.439 1.141 sum 0.125 -6.201 17.973 19.013 Atomic orbital electron populations 1.22063 0.92060 1.03142 1.03716 1.19950 0.97604 0.99851 0.89873 0.87855 1.20454 0.80227 0.84606 0.84282 1.90671 1.38179 1.26603 1.86352 1.47750 1.50674 1.28858 1.05219 1.22251 0.94048 0.87018 1.04349 1.22097 0.95961 0.95687 0.83942 0.88013 1.23186 0.97462 0.99632 0.98176 1.21796 0.88742 0.90566 0.97844 1.44572 1.05096 1.52210 1.30922 1.19708 0.95265 1.19523 1.11954 0.91940 1.25735 0.95123 0.95942 1.05679 1.70821 1.29428 1.43003 1.12138 0.83545 0.75392 0.75952 0.75835 1.21094 1.22030 1.22133 1.21671 0.93399 0.94929 0.90050 1.18360 1.00833 0.94159 0.96769 1.20048 0.99858 1.01332 0.94111 1.25464 1.08647 0.96743 1.04495 1.84166 1.47862 1.13323 1.19902 1.25322 1.06419 0.98999 0.99963 0.91379 0.90262 0.92153 0.92351 0.91677 0.88270 0.90635 0.91627 0.94671 0.93338 0.92252 0.94809 0.95372 0.84338 0.82018 0.82230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.66 37.15 0.32 -1.21 16 2 C -0.05 -0.59 2.17 -92.92 -0.20 -0.79 16 3 H 0.10 1.12 7.29 -51.93 -0.38 0.74 16 4 C 0.52 8.09 6.98 -10.98 -0.08 8.01 16 5 O -0.54 -10.10 14.62 5.56 0.08 -10.02 16 6 N -0.59 -9.52 2.83 -171.84 -0.49 -10.01 16 7 C 0.07 0.98 6.89 59.85 0.41 1.39 16 8 C 0.13 2.28 3.58 -66.10 -0.24 2.05 16 9 H 0.10 1.86 7.00 -51.92 -0.36 1.50 16 10 C -0.15 -2.59 6.54 -24.46 -0.16 -2.75 16 11 C 0.14 2.97 4.49 -2.42 -0.01 2.96 16 12 N -0.60 -14.65 2.85 -169.94 -0.48 -15.14 16 13 C -0.34 -9.28 10.00 -15.06 -0.15 -9.43 16 14 H 0.06 1.75 7.97 -52.49 -0.42 1.33 16 15 C -0.02 -0.63 5.09 -17.43 -0.09 -0.72 16 16 N -0.91 -26.30 13.00 55.49 0.72 -25.58 16 17 Si 1.06 24.88 30.00 -169.99 -5.10 19.78 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.13 2.66 6.24 -3.06 -0.02 2.64 16 22 C -0.09 -1.10 4.28 -106.25 -0.45 -1.55 16 23 C -0.12 -1.35 9.92 -41.21 -0.41 -1.76 16 24 C -0.22 -2.20 11.23 29.04 0.33 -1.87 16 25 S 0.08 0.89 23.34 -107.50 -2.51 -1.62 16 26 C -0.17 -2.11 9.27 29.04 0.27 -1.84 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.78 4.53 -51.93 -0.24 0.55 16 29 H 0.06 0.62 7.73 -51.93 -0.40 0.22 16 30 H 0.06 0.79 6.79 -51.93 -0.35 0.43 16 31 H 0.06 0.79 6.01 -51.93 -0.31 0.48 16 32 H 0.10 1.87 5.18 -51.93 -0.27 1.60 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.04 0.78 4.17 -51.93 -0.22 0.56 16 36 H 0.05 1.18 8.07 -51.93 -0.42 0.77 16 37 H 0.27 7.52 6.19 -40.82 -0.25 7.26 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 40 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.16 1.95 7.93 -52.48 -0.42 1.53 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -31.49 338.90 -8.93 -40.43 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.79 Total: 1.94 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.48 Total: -4.89 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.25 Total: -50.73 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.10 Total: 19.78 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.51 Total: -1.62 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.49 -8.93 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033407939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.295 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds