Wall clock time and date at job start Tue Mar 31 2020 10:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.58730 * 2 1 4 4 C 1.53190 * 109.58527 * 120.43088 * 2 1 3 5 5 C 1.53044 * 109.31149 * 174.42071 * 4 2 1 6 6 H 1.09001 * 109.44474 * 58.64609 * 5 4 2 7 7 N 1.46495 * 109.46078 * 178.61138 * 5 4 2 8 8 C 1.36942 * 120.00223 * 205.06825 * 7 5 4 9 9 H 1.07999 * 119.99500 * 0.02562 * 8 7 5 10 10 C 1.38802 * 119.99801 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00823 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99656 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46996 * 270.00126 * 12 10 8 14 14 H 1.48505 * 109.47047 * 150.00457 * 12 10 8 15 15 H 1.48502 * 109.47002 * 30.00265 * 12 10 8 16 16 C 1.53038 * 109.53946 * 298.63605 * 5 4 2 17 17 C 1.53196 * 109.31382 * 61.36384 * 16 5 4 18 18 N 1.46925 * 108.77506 * 305.36606 * 17 16 5 19 19 C 1.34782 * 120.63184 * 233.63355 * 18 17 16 20 20 O 1.21276 * 119.99995 * 174.95014 * 19 18 17 21 21 C 1.50695 * 119.99725 * 354.94762 * 19 18 17 22 22 C 1.50700 * 109.47261 * 180.02562 * 21 19 18 23 23 C 1.38420 * 122.53886 * 89.99702 * 22 21 19 24 24 C 1.33390 * 114.92201 * 179.97438 * 23 22 21 25 25 S 1.75886 * 109.59325 * 0.02562 * 24 23 22 26 26 C 1.33392 * 122.53691 * 269.71446 * 22 21 19 27 27 H 1.08999 * 109.47174 * 175.94463 * 1 2 3 28 28 H 1.08998 * 109.46887 * 295.94263 * 1 2 3 29 29 H 1.08997 * 109.47215 * 55.94222 * 1 2 3 30 30 H 1.08998 * 109.49906 * 54.47077 * 4 2 1 31 31 H 1.08993 * 109.49645 * 294.36884 * 4 2 1 32 32 H 0.96999 * 120.00309 * 25.06887 * 7 5 4 33 33 H 0.97004 * 119.99406 * 359.97438 * 11 10 8 34 34 H 1.08998 * 109.49806 * 181.31520 * 16 5 4 35 35 H 1.09006 * 109.49523 * 301.37977 * 16 5 4 36 36 H 1.08992 * 109.58697 * 65.15510 * 17 16 5 37 37 H 1.09000 * 109.58148 * 185.58349 * 17 16 5 38 38 H 1.08998 * 109.47605 * 300.00292 * 21 19 18 39 39 H 1.09001 * 109.47382 * 60.00320 * 21 19 18 40 40 H 1.08002 * 122.54307 * 359.96184 * 23 22 21 41 41 H 1.08003 * 125.20805 * 180.02562 * 24 23 22 42 42 H 1.07993 * 125.20659 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5675 -0.8496 1.1690 6 1 4.0059 0.1460 1.0993 7 7 4.0652 -1.5188 2.3733 8 6 5.3493 -1.3013 2.7965 9 1 5.9950 -0.6360 2.2425 10 6 5.8206 -1.9350 3.9379 11 7 5.0337 -2.7455 4.6133 12 14 7.5721 -1.6377 4.5155 13 1 8.4760 -2.6356 3.8891 14 1 7.6355 -1.7713 5.9932 15 1 7.9971 -0.2699 4.1234 16 6 3.9569 -1.6656 -0.0657 17 6 3.4651 -0.9452 -1.3250 18 7 2.0226 -0.6980 -1.1954 19 6 1.1673 -1.1042 -2.1547 20 8 -0.0281 -0.9767 -1.9948 21 6 1.6965 -1.7167 -3.4258 22 6 0.5439 -2.0814 -4.3255 23 6 0.0221 -1.2035 -5.2599 24 6 -0.9960 -1.6840 -5.9754 25 16 -1.3456 -3.3322 -5.4708 26 6 -0.0472 -3.2765 -4.2855 27 1 -0.3633 -1.0251 -0.0727 28 1 -0.3633 0.4496 0.9241 29 1 -0.3633 0.5755 -0.8514 30 1 1.6030 -1.7270 1.2891 31 1 1.7661 -0.1696 2.1365 32 1 3.4852 -2.1161 2.8711 33 1 4.1241 -2.8995 4.3136 34 1 5.0412 -1.7695 -0.1060 35 1 3.4988 -2.6531 -0.0084 36 1 3.9903 0.0038 -1.4318 37 1 3.6518 -1.5690 -2.1992 38 1 2.3408 -0.9994 -3.9340 39 1 2.2687 -2.6130 -3.1864 40 1 0.4098 -0.2051 -5.3990 41 1 -1.5248 -1.1436 -6.7466 42 1 0.2277 -4.0853 -3.6248 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044445913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:14 Heat of formation + Delta-G solvation = 22.227756 kcal Electronic energy + Delta-G solvation = -23304.618617 eV Core-core repulsion = 19991.071293 eV Total energy + Delta-G solvation = -3313.547325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.55813 -38.41514 -37.13536 -34.72501 -33.16162 -32.07595 -30.95666 -29.14560 -28.02026 -26.90673 -24.16960 -23.54362 -23.03160 -21.77199 -20.32396 -19.24312 -18.65950 -17.70209 -17.31419 -16.75783 -16.01468 -15.70799 -15.11553 -14.72798 -14.15571 -13.92783 -13.75975 -13.60886 -13.45276 -13.19721 -13.04943 -12.66679 -12.61745 -12.36952 -12.18722 -12.02704 -11.82794 -11.62430 -11.39721 -10.95123 -10.86555 -10.82648 -10.56417 -10.46716 -10.10249 -10.03393 -9.23396 -9.05715 -8.94216 -8.88419 -8.50902 -8.41820 -7.08018 -6.13359 -3.13843 0.86775 1.51463 1.82460 2.47149 2.68558 3.15599 3.48792 3.53535 3.67626 4.59321 4.62452 4.63311 4.78052 5.00335 5.04475 5.10518 5.19250 5.23654 5.30119 5.32846 5.43365 5.46391 5.52658 5.61001 5.76047 5.83092 5.86417 5.96099 6.06108 6.12811 6.21390 6.27598 6.29974 6.37931 6.39554 6.46425 6.69527 6.82997 6.95794 7.52788 7.77122 8.28301 8.72326 9.19071 10.05564 10.20685 11.34987 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.029134 B = 0.002774 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.849846 B =10090.324717 C =10356.638055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.148 3.852 3 H 0.069 0.931 4 C -0.136 4.136 5 C 0.184 3.816 6 H 0.048 0.952 7 N -0.736 5.736 8 C -0.331 4.331 9 H 0.065 0.935 10 C -0.045 4.045 11 N -0.944 5.944 12 Si 1.082 2.918 13 H -0.296 1.296 14 H -0.288 1.288 15 H -0.295 1.295 16 C -0.151 4.151 17 C 0.107 3.893 18 N -0.605 5.605 19 C 0.515 3.485 20 O -0.530 6.530 21 C -0.085 4.085 22 C -0.081 4.081 23 C -0.119 4.119 24 C -0.215 4.215 25 S 0.089 5.911 26 C -0.197 4.197 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.366 0.634 33 H 0.256 0.744 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.138 0.862 41 H 0.162 0.838 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.311 2.964 -21.407 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.045 3.955 3 H 0.087 0.913 4 C -0.175 4.175 5 C 0.074 3.926 6 H 0.066 0.934 7 N -0.377 5.377 8 C -0.462 4.462 9 H 0.083 0.917 10 C -0.243 4.243 11 N -0.589 5.589 12 Si 0.913 3.087 13 H -0.223 1.223 14 H -0.214 1.214 15 H -0.221 1.221 16 C -0.192 4.192 17 C -0.016 4.016 18 N -0.339 5.339 19 C 0.303 3.697 20 O -0.407 6.407 21 C -0.128 4.128 22 C -0.094 4.094 23 C -0.149 4.149 24 C -0.350 4.350 25 S 0.353 5.647 26 C -0.333 4.333 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.200 0.800 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.155 0.845 41 H 0.180 0.820 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.736 1.705 -20.679 22.920 hybrid contribution -0.067 1.208 -0.587 1.344 sum -9.803 2.913 -21.266 23.597 Atomic orbital electron populations 1.22185 0.92815 1.03652 1.00302 1.21283 0.95415 0.94949 0.83859 0.91256 1.22307 0.97518 1.00865 0.96786 1.20093 0.90778 0.94946 0.86758 0.93367 1.42453 1.13081 1.54658 1.27548 1.20051 0.89633 1.26280 1.10277 0.91723 1.25767 1.06266 0.97608 0.94643 1.70848 1.08197 1.38363 1.41505 0.83209 0.74136 0.75048 0.76333 1.22328 1.21389 1.22148 1.22652 1.01759 0.99884 0.94879 1.21864 0.79623 1.00571 0.99567 1.48231 1.07612 1.57802 1.20263 1.20428 0.86554 0.78332 0.84397 1.90757 1.15517 1.55186 1.79245 1.20476 0.96410 1.02682 0.93196 1.18356 0.99251 0.93414 0.98348 1.20003 0.97572 1.00750 0.96623 1.25500 1.03766 0.98815 1.06924 1.84192 1.34363 1.12590 1.33599 1.25412 1.01090 1.02029 1.04748 0.91157 0.94075 0.91429 0.91966 0.90820 0.80041 0.93318 0.90574 0.92364 0.91418 0.90353 0.88048 0.88054 0.84474 0.82008 0.82041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 7.59 37.16 0.28 -1.64 16 2 C 0.15 2.13 3.49 -67.60 -0.24 1.90 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.14 -2.26 4.84 -26.61 -0.13 -2.39 16 5 C 0.18 3.51 2.73 -67.89 -0.19 3.32 16 6 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 7 N -0.74 -17.94 5.12 -53.39 -0.27 -18.21 16 8 C -0.33 -9.06 9.93 -15.06 -0.15 -9.21 16 9 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 10 C -0.05 -1.29 5.50 -17.44 -0.10 -1.39 16 11 N -0.94 -28.98 13.70 55.49 0.76 -28.22 16 12 Si 1.08 25.57 29.92 -169.99 -5.09 20.48 16 13 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 16 C -0.15 -2.45 5.66 -26.61 -0.15 -2.60 16 17 C 0.11 1.30 6.33 -3.71 -0.02 1.28 16 18 N -0.60 -8.07 2.97 -165.22 -0.49 -8.56 16 19 C 0.52 6.87 7.60 -10.99 -0.08 6.79 16 20 O -0.53 -8.54 11.43 5.56 0.06 -8.48 16 21 C -0.09 -0.85 4.36 -29.04 -0.13 -0.98 16 22 C -0.08 -0.88 4.29 -106.25 -0.46 -1.34 16 23 C -0.12 -1.21 9.98 -41.21 -0.41 -1.62 16 24 C -0.21 -2.00 11.23 29.04 0.33 -1.68 16 25 S 0.09 0.86 23.34 -107.50 -2.51 -1.65 16 26 C -0.20 -2.12 10.98 29.04 0.32 -1.80 16 27 H 0.07 1.14 6.73 -51.93 -0.35 0.79 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.02 6.77 -51.93 -0.35 0.67 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.37 9.38 6.63 -40.82 -0.27 9.11 16 33 H 0.26 7.74 6.77 -40.82 -0.28 7.47 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.75 5.96 -51.93 -0.31 0.44 16 38 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.10 0.89 7.46 -51.93 -0.39 0.50 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.16 1.12 8.06 -52.48 -0.42 0.69 16 42 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -32.38 347.80 -9.63 -42.01 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.22 Total: 8.75 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.12 Total: -11.36 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.00 Total: -54.99 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.06 Total: -8.48 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.09 Total: 20.48 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.38 -9.63 -42.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044445913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.237 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds