Wall clock time and date at job start Tue Mar 31 2020 10:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47534 * 2 1 4 4 N 1.46898 * 109.47098 * 120.00271 * 2 1 3 5 5 C 1.46906 * 110.99888 * 274.99671 * 4 2 1 6 6 C 1.52999 * 109.46897 * 179.97438 * 5 4 2 7 7 N 1.46506 * 109.46684 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99873 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99754 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.00137 * 180.02562 * 8 7 6 11 11 S 1.81003 * 109.47228 * 180.02562 * 10 8 7 12 12 C 1.76206 * 99.99904 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99972 * 0.02562 * 12 11 10 14 14 C 1.38795 * 119.99962 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99837 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00138 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46912 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46980 * 119.99834 * 16 14 12 19 19 H 1.48502 * 109.46757 * 239.99904 * 16 14 12 20 20 C 1.50703 * 109.46999 * 239.99872 * 2 1 3 21 21 C 1.38238 * 119.99810 * 279.72706 * 20 2 1 22 22 C 1.38244 * 119.99586 * 179.81054 * 21 20 2 23 23 C 1.38231 * 119.99850 * 0.39831 * 22 21 20 24 24 C 1.38233 * 120.00308 * 359.85440 * 23 22 21 25 25 C 1.38235 * 120.00111 * 359.95805 * 24 23 22 26 26 H 1.09000 * 109.47371 * 299.99998 * 1 2 3 27 27 H 1.09002 * 109.47594 * 59.99753 * 1 2 3 28 28 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 29 29 H 1.00902 * 111.00533 * 151.04078 * 4 2 1 30 30 H 1.09000 * 109.47033 * 300.00113 * 5 4 2 31 31 H 1.09001 * 109.46544 * 60.00058 * 5 4 2 32 32 H 1.09000 * 109.47486 * 299.99976 * 6 5 4 33 33 H 1.09001 * 109.47362 * 60.00699 * 6 5 4 34 34 H 0.96999 * 120.00080 * 0.02562 * 7 6 5 35 35 H 1.09000 * 109.46978 * 300.00347 * 10 8 7 36 36 H 1.08996 * 109.47197 * 59.99985 * 10 8 7 37 37 H 0.97010 * 119.99929 * 179.97438 * 15 14 12 38 38 H 1.07995 * 120.00346 * 0.02562 * 21 20 2 39 39 H 1.07998 * 119.99986 * 180.23437 * 22 21 20 40 40 H 1.08004 * 120.00061 * 179.83723 * 23 22 21 41 41 H 1.08002 * 120.00350 * 179.97438 * 24 23 22 42 42 H 1.07996 * 120.00161 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5333 3.5744 7 7 2.6583 0.3795 4.7186 8 6 3.0838 -0.0694 5.9161 9 8 3.4148 -1.2289 6.0462 10 6 3.1483 0.8693 7.0932 11 16 3.7548 -0.0248 8.5454 12 6 3.7298 1.2735 9.7365 13 1 3.4012 2.2619 9.4511 14 6 4.1315 1.0257 11.0417 15 7 4.5315 -0.1792 11.3896 16 14 4.1043 2.4018 12.3046 17 1 3.6181 3.6508 11.6653 18 1 3.1979 2.0313 13.4210 19 1 5.4760 2.6173 12.8313 20 6 2.0323 -0.7105 -1.2305 21 6 2.0719 -2.0919 -1.2632 22 6 2.5290 -2.7436 -2.3934 23 6 2.9541 -2.0138 -3.4877 24 6 2.9194 -0.6323 -3.4530 25 6 2.4587 0.0194 -2.3243 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 2.9172 -1.1207 1.0287 30 1 2.7589 1.0461 2.1182 31 1 1.0870 0.6163 2.5525 32 1 1.9183 -1.3566 3.8030 33 1 3.5904 -0.9273 3.3691 34 1 2.3932 1.3068 4.6146 35 1 3.8253 1.6924 6.8647 36 1 2.1531 1.2637 7.2983 37 1 4.8126 -0.3523 12.3018 38 1 1.7426 -2.6620 -0.4071 39 1 2.5565 -3.8229 -2.4204 40 1 3.3137 -2.5229 -4.3697 41 1 3.2519 -0.0621 -4.3078 42 1 2.4319 1.0987 -2.2971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:34 Heat of formation + Delta-G solvation = -19.355979 kcal Electronic energy + Delta-G solvation = -21222.862776 eV Core-core repulsion = 17907.512245 eV Total energy + Delta-G solvation = -3315.350531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.94558 -39.14985 -37.17540 -34.70987 -32.42644 -32.24004 -31.24468 -29.92885 -29.21484 -27.08014 -25.46521 -23.81978 -23.06990 -22.05749 -20.80671 -20.24452 -17.90023 -17.41484 -16.44125 -16.34251 -15.93171 -15.74092 -15.36052 -14.90938 -14.80156 -14.37961 -14.32377 -13.94701 -13.80164 -13.67886 -13.13907 -13.03555 -12.70489 -12.55482 -12.46085 -12.26082 -11.93741 -11.67889 -11.49303 -11.30278 -11.06900 -11.04590 -11.01483 -10.75337 -9.80301 -9.41731 -9.27117 -9.11267 -9.07481 -8.88995 -8.86037 -8.22418 -6.49369 -6.21368 -3.91808 0.96041 1.05267 2.97186 3.11360 3.21817 3.26669 3.31413 3.41647 3.58891 4.05085 4.20653 4.23192 4.54204 4.65297 4.69143 4.79587 4.82596 4.91668 5.05546 5.13859 5.14051 5.20874 5.23219 5.25139 5.39769 5.50139 5.62346 5.64459 5.70286 5.77108 5.90313 5.91548 5.93641 6.09097 6.14335 6.17652 6.18075 6.56309 6.63593 6.68358 6.97424 7.60243 7.70427 8.35817 8.62327 9.24049 10.86107 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.040852 B = 0.001816 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.241555 B =15416.926185 C =15692.054074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.126 3.874 3 H 0.053 0.947 4 N -0.679 5.679 5 C 0.049 3.951 6 C 0.123 3.877 7 N -0.739 5.739 8 C 0.532 3.468 9 O -0.516 6.516 10 C -0.153 4.153 11 S -0.061 6.061 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.092 4.092 21 C -0.100 4.100 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.114 4.114 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.347 0.653 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 1.775 -30.069 30.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.017 3.983 3 H 0.071 0.929 4 N -0.312 5.312 5 C -0.080 4.080 6 C -0.001 4.001 7 N -0.394 5.394 8 C 0.318 3.682 9 O -0.390 6.390 10 C -0.304 4.304 11 S 0.166 5.834 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.092 4.092 21 C -0.118 4.118 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.133 4.133 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.166 0.834 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.465 -0.539 -29.532 30.236 hybrid contribution 0.283 3.217 0.295 3.243 sum -6.182 2.678 -29.237 30.003 Atomic orbital electron populations 1.21790 0.93310 1.02853 1.01424 1.20427 0.96244 0.95139 0.86534 0.92928 1.60457 1.33959 1.32952 1.03820 1.22154 1.01377 0.94065 0.90442 1.21132 1.01601 0.93052 0.84362 1.45899 1.69953 1.13825 1.09758 1.20292 0.76010 0.88805 0.83084 1.90709 1.46440 1.18215 1.83646 1.23527 1.05330 1.02329 0.99190 1.85415 1.84699 1.15358 0.97930 1.22913 1.51371 0.97450 0.96606 0.90868 1.24998 0.94558 0.96399 0.97676 1.70033 1.41114 1.20014 1.19103 0.86112 0.77940 0.80986 0.80419 1.19633 1.20555 1.20575 1.19939 0.99653 0.94159 0.95470 1.21133 0.98470 0.93867 0.98359 1.21230 0.99064 1.00085 0.93544 1.21195 0.99913 0.94240 0.98620 1.21119 1.00111 0.94696 0.98092 1.21042 0.99173 0.99725 0.93359 0.92251 0.92475 0.91637 0.83408 0.94483 0.90166 0.90637 0.91841 0.76927 0.89247 0.89187 0.92236 0.84952 0.85956 0.86199 0.86134 0.86246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.39 37.15 0.35 -0.61 16 2 C 0.13 0.91 2.82 -68.87 -0.19 0.72 16 3 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 4 N -0.68 -5.46 5.69 -107.95 -0.61 -6.07 16 5 C 0.05 0.41 5.60 -3.82 -0.02 0.39 16 6 C 0.12 1.43 5.93 -4.04 -0.02 1.41 16 7 N -0.74 -9.78 5.56 -60.29 -0.33 -10.12 16 8 C 0.53 10.00 7.85 -10.99 -0.09 9.92 16 9 O -0.52 -11.90 15.86 5.55 0.09 -11.82 16 10 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 11 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 12 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 13 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 14 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 16 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.09 -0.70 4.72 -104.62 -0.49 -1.19 16 21 C -0.10 -0.78 9.00 -39.58 -0.36 -1.13 16 22 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 23 C -0.12 -0.82 10.05 -39.59 -0.40 -1.22 16 24 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 25 C -0.11 -0.82 9.67 -39.58 -0.38 -1.20 16 26 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.35 2.78 7.98 -39.29 -0.31 2.47 16 30 H 0.04 0.29 8.06 -51.93 -0.42 -0.13 16 31 H 0.08 0.64 7.44 -51.93 -0.39 0.25 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.40 4.00 8.47 -40.82 -0.35 3.65 16 35 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.13 1.01 7.71 -52.49 -0.40 0.61 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.12 0.59 8.06 -52.48 -0.42 0.16 16 41 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.12 0.68 8.04 -52.49 -0.42 0.26 16 LS Contribution 369.99 15.07 5.58 5.58 Total: -1.00 -34.39 369.99 -10.19 -44.58 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.42 Total: 2.11 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -1.98 Total: -11.30 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -0.22 Total: -41.71 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.39 -10.19 -44.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.228 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds