Wall clock time and date at job start Tue Mar 31 2020 10:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47306 * 2 1 4 4 C 1.53001 * 109.46985 * 239.99935 * 2 1 3 5 5 N 1.46490 * 109.47264 * 65.00078 * 4 2 1 6 6 C 1.36935 * 120.00121 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00139 * 0.02562 * 6 5 4 8 8 C 1.38816 * 120.00401 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99569 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00172 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.46685 * 269.99637 * 10 8 6 12 12 H 1.48494 * 109.47357 * 29.99716 * 10 8 6 13 13 H 1.48502 * 109.47120 * 150.00435 * 10 8 6 14 14 C 1.52998 * 109.46900 * 120.00063 * 2 1 3 15 15 N 1.46500 * 109.46894 * 294.99786 * 14 2 1 16 16 C 1.34782 * 119.99875 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99868 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99876 * 179.97438 * 16 15 14 19 19 H 1.09000 * 115.54880 * 34.42234 * 18 16 15 20 20 C 1.53000 * 117.49888 * 248.74988 * 18 16 15 21 21 C 1.53007 * 117.49850 * 180.09191 * 18 16 15 22 22 H 1.09002 * 117.49335 * 0.02562 * 21 18 16 23 23 C 1.50694 * 117.49845 * 214.97996 * 21 18 16 24 24 C 1.38424 * 122.54077 * 119.99928 * 23 21 18 25 25 C 1.33387 * 114.92514 * 179.97438 * 24 23 21 26 26 S 1.75880 * 109.58990 * 359.97438 * 25 24 23 27 27 C 1.33391 * 122.54235 * 299.71043 * 23 21 18 28 28 H 1.08997 * 109.47308 * 300.00643 * 1 2 3 29 29 H 1.09005 * 109.46699 * 59.99648 * 1 2 3 30 30 H 1.09000 * 109.47306 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46836 * 304.99785 * 4 2 1 32 32 H 1.08999 * 109.47071 * 185.00824 * 4 2 1 33 33 H 0.97000 * 120.00577 * 0.02562 * 5 4 2 34 34 H 0.97001 * 119.99885 * 359.97438 * 9 8 6 35 35 H 1.09000 * 109.47109 * 54.99774 * 14 2 1 36 36 H 1.08998 * 109.47271 * 174.99554 * 14 2 1 37 37 H 0.97002 * 120.00471 * 0.02562 * 15 14 2 38 38 H 1.08996 * 117.50129 * 0.02562 * 20 18 16 39 39 H 1.09007 * 117.50048 * 144.99809 * 20 18 16 40 40 H 1.08010 * 122.53461 * 359.97438 * 24 23 21 41 41 H 1.08003 * 125.20266 * 180.02562 * 25 24 23 42 42 H 1.07994 * 125.19889 * 0.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0020 -0.4204 -3.6855 7 1 2.5629 -1.3377 -3.7864 8 6 1.6352 0.2968 -4.8160 9 7 0.9520 1.4150 -4.6930 10 14 2.1114 -0.3252 -6.5119 11 1 3.4342 0.2335 -6.8905 12 1 2.1877 -1.8081 -6.4919 13 1 1.0910 0.1048 -7.5014 14 6 2.0400 -0.7213 1.2492 15 7 1.6524 0.0354 2.4423 16 6 1.9955 -0.4136 3.6660 17 8 2.6254 -1.4438 3.7793 18 6 1.5973 0.3651 4.8932 19 1 0.6356 0.8749 4.8350 20 6 2.7116 1.0473 5.6894 21 6 2.0184 -0.1957 6.2531 22 1 2.5838 -1.1275 6.2600 23 6 1.0722 -0.0003 7.4096 24 6 0.5247 -1.0606 8.1110 25 6 -0.2929 -0.7140 9.1063 26 16 -0.4031 1.0391 9.1954 27 6 0.7031 1.2077 7.8385 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6053 -1.7198 -1.2951 32 1 3.1263 -0.7996 -1.2055 33 1 1.1489 0.8594 -2.3518 34 1 0.7044 1.7378 -3.8124 35 1 1.6053 -1.7198 1.2951 36 1 3.1263 -0.7996 1.2056 37 1 1.1482 0.8591 2.3518 38 1 3.7326 0.9333 5.3253 39 1 2.4830 2.0061 6.1550 40 1 0.7431 -2.0908 7.8706 41 1 -0.8078 -1.4042 9.7582 42 1 1.0321 2.1456 7.4162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753621758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:35 Heat of formation + Delta-G solvation = 23.107487 kcal Electronic energy + Delta-G solvation = -21731.928578 eV Core-core repulsion = 18418.419401 eV Total energy + Delta-G solvation = -3313.509177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.40402 -38.84144 -37.04579 -35.75663 -34.56551 -32.65932 -29.97368 -29.64027 -26.99348 -25.71151 -25.24171 -23.74641 -22.42608 -21.79527 -20.54269 -19.75280 -18.93172 -18.42834 -17.46345 -16.97082 -16.30886 -15.75901 -15.47794 -14.77202 -14.49993 -14.44600 -13.92308 -13.71896 -13.55155 -13.29812 -13.13426 -13.01647 -12.83077 -12.50787 -12.37855 -12.19035 -12.10126 -11.17700 -11.10067 -10.98992 -10.86833 -10.83594 -10.64784 -10.62788 -10.38022 -10.03008 -9.94793 -9.19410 -9.16249 -9.09634 -8.88624 -8.67648 -7.00959 -6.11435 -3.10831 0.59693 1.27483 1.59564 2.11741 2.46542 3.06236 3.51953 3.56804 3.61998 3.70759 4.21644 4.39721 4.52223 4.61661 4.65978 4.81314 4.85390 4.96958 5.02989 5.11774 5.20255 5.28167 5.33978 5.50418 5.57548 5.60850 5.71499 5.80138 5.84480 5.90559 5.92962 5.97660 6.12419 6.13975 6.27141 6.40975 6.51441 6.66719 6.76783 7.41971 7.81324 8.12870 8.75114 9.22170 10.08463 10.23273 11.37270 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.038975 B = 0.001893 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.231476 B =14788.087179 C =15032.422881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.075 0.925 4 C 0.166 3.834 5 N -0.742 5.742 6 C -0.331 4.331 7 H 0.065 0.935 8 C -0.047 4.047 9 N -0.945 5.945 10 Si 1.084 2.916 11 H -0.295 1.295 12 H -0.295 1.295 13 H -0.288 1.288 14 C 0.127 3.873 15 N -0.720 5.720 16 C 0.540 3.460 17 O -0.542 6.542 18 C -0.177 4.177 19 H 0.125 0.875 20 C -0.143 4.143 21 C -0.064 4.064 22 H 0.129 0.871 23 C -0.068 4.068 24 C -0.124 4.124 25 C -0.211 4.211 26 S 0.094 5.906 27 C -0.214 4.214 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.367 0.633 34 H 0.254 0.746 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.401 0.599 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.143 0.857 41 H 0.165 0.835 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.986 0.270 29.920 29.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.094 0.906 4 C 0.038 3.962 5 N -0.388 5.388 6 C -0.462 4.462 7 H 0.083 0.917 8 C -0.244 4.244 9 N -0.591 5.591 10 Si 0.914 3.086 11 H -0.223 1.223 12 H -0.221 1.221 13 H -0.214 1.214 14 C 0.003 3.997 15 N -0.371 5.371 16 C 0.326 3.674 17 O -0.420 6.420 18 C -0.198 4.198 19 H 0.143 0.857 20 C -0.180 4.180 21 C -0.085 4.085 22 H 0.147 0.853 23 C -0.080 4.080 24 C -0.155 4.155 25 C -0.346 4.346 26 S 0.358 5.642 27 C -0.350 4.350 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.200 0.800 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.236 0.764 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.161 0.839 41 H 0.183 0.817 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.307 0.629 29.270 29.368 hybrid contribution 0.365 -0.665 0.683 1.021 sum -1.942 -0.036 29.954 30.017 Atomic orbital electron populations 1.21786 0.94675 1.02046 1.01328 1.21570 0.96676 1.00454 0.94361 0.90644 1.20510 0.96672 0.94131 0.84907 1.42345 1.67595 1.27341 1.01526 1.20075 1.33055 1.07998 0.85033 0.91689 1.25796 0.99527 0.96660 1.02428 1.70862 1.41064 1.22071 1.25087 0.83181 0.75915 0.74355 0.75102 1.22312 1.22138 1.21381 1.21410 1.00172 0.95276 0.82801 1.45982 1.57596 1.27785 1.05729 1.19571 0.79059 0.84970 0.83771 1.90703 1.40254 1.24368 1.86652 1.22377 1.01564 1.04849 0.91058 0.85736 1.23120 0.97066 0.96723 1.01118 1.20733 0.99155 0.99604 0.88970 0.85340 1.18202 0.99749 0.92111 0.97957 1.20071 0.98679 1.00565 0.96145 1.25613 1.06400 0.97996 1.04627 1.84311 1.45439 1.02660 1.31829 1.25465 1.05197 1.01671 1.02629 0.93721 0.91572 0.92675 0.95889 0.96034 0.79961 0.93478 0.91271 0.91298 0.76426 0.87536 0.87607 0.83914 0.81732 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.94 37.16 0.33 -1.72 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.17 3.34 5.65 -4.05 -0.02 3.31 16 5 N -0.74 -18.65 5.33 -59.91 -0.32 -18.97 16 6 C -0.33 -9.44 9.99 -15.06 -0.15 -9.59 16 7 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 8 C -0.05 -1.37 5.50 -17.43 -0.10 -1.47 16 9 N -0.94 -29.25 13.70 55.49 0.76 -28.49 16 10 Si 1.08 26.15 29.92 -169.99 -5.09 21.07 16 11 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 14 C 0.13 1.75 5.06 -4.04 -0.02 1.73 16 15 N -0.72 -8.28 5.28 -60.29 -0.32 -8.60 16 16 C 0.54 6.68 7.61 -10.98 -0.08 6.60 16 17 O -0.54 -8.76 16.26 5.55 0.09 -8.67 16 18 C -0.18 -1.58 5.85 -91.77 -0.54 -2.12 16 19 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 20 C -0.14 -1.07 9.63 -26.69 -0.26 -1.33 16 21 C -0.06 -0.56 5.66 -91.73 -0.52 -1.08 16 22 H 0.13 1.30 7.67 -51.93 -0.40 0.90 16 23 C -0.07 -0.56 5.52 -106.25 -0.59 -1.15 16 24 C -0.12 -0.99 9.98 -41.21 -0.41 -1.41 16 25 C -0.21 -1.47 11.23 29.04 0.33 -1.14 16 26 S 0.09 0.64 23.34 -107.50 -2.51 -1.87 16 27 C -0.21 -1.55 10.39 29.04 0.30 -1.25 16 28 H 0.04 0.52 7.18 -51.93 -0.37 0.15 16 29 H 0.07 1.11 7.18 -51.93 -0.37 0.74 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.37 9.29 5.68 -40.82 -0.23 9.06 16 34 H 0.25 7.70 6.77 -40.82 -0.28 7.42 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.40 3.70 7.65 -40.82 -0.31 3.39 16 38 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.11 0.58 6.54 -51.92 -0.34 0.24 16 40 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.16 0.90 6.63 -52.49 -0.35 0.55 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -33.95 363.03 -9.95 -43.89 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.09 Total: 8.69 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -1.95 Total: -12.53 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.12 Total: -56.05 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 26.15 SS G_CDS: -5.09 Total: 21.07 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.51 Total: -1.87 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.95 -9.95 -43.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753621758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.001 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds