Wall clock time and date at job start Tue Mar 31 2020 09:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 N 1.46501 * 109.47129 * 185.61048 * 3 2 1 5 5 C 1.36940 * 119.99739 * 83.94887 * 4 3 2 6 6 H 1.08001 * 119.99783 * 170.05085 * 5 4 3 7 7 C 1.38815 * 120.00218 * 350.04599 * 5 4 3 8 8 N 1.31617 * 119.99810 * 2.26308 * 7 5 4 9 9 Si 1.86792 * 119.99943 * 182.26358 * 7 5 4 10 10 H 1.48495 * 109.47535 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47009 * 120.00180 * 9 7 5 12 12 H 1.48507 * 109.47183 * 239.99813 * 9 7 5 13 13 C 1.46498 * 119.99979 * 263.94585 * 4 3 2 14 14 C 1.50698 * 109.47310 * 275.51116 * 13 4 3 15 15 C 1.38169 * 120.02514 * 100.61821 * 14 13 4 16 16 C 1.38237 * 120.05842 * 179.97438 * 15 14 13 17 17 N 1.48004 * 119.94752 * 180.02562 * 16 15 14 18 18 O 1.21795 * 119.99828 * 0.02562 * 17 16 15 19 19 O 1.21799 * 119.99933 * 180.02562 * 17 16 15 20 20 C 1.38294 * 120.11216 * 359.97438 * 16 15 14 21 21 C 1.38132 * 120.05190 * 359.71329 * 20 16 15 22 22 C 1.38705 * 120.03258 * 280.60252 * 14 13 4 23 23 O 1.35903 * 120.05618 * 0.02562 * 22 14 13 24 24 C 1.42901 * 117.00107 * 175.00832 * 23 22 14 25 25 C 1.52999 * 109.46877 * 184.86099 * 24 23 22 26 26 H 1.09000 * 109.47125 * 184.96429 * 1 2 3 27 27 H 1.08995 * 109.47647 * 304.96614 * 1 2 3 28 28 H 1.09004 * 109.47066 * 64.96995 * 1 2 3 29 29 H 1.08994 * 109.47760 * 239.99647 * 2 1 3 30 30 H 1.09005 * 109.46739 * 119.99491 * 2 1 3 31 31 H 1.09000 * 109.47437 * 65.61084 * 3 2 1 32 32 H 1.09004 * 109.47045 * 305.60965 * 3 2 1 33 33 H 0.97002 * 120.00453 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46740 * 155.51324 * 13 4 3 35 35 H 1.08991 * 109.46996 * 35.51915 * 13 4 3 36 36 H 1.08001 * 119.97092 * 359.97438 * 15 14 13 37 37 H 1.07994 * 119.97448 * 179.97438 * 20 16 15 38 38 H 1.07995 * 120.02660 * 180.29865 * 21 20 16 39 39 H 1.08997 * 109.46887 * 304.85746 * 24 23 22 40 40 H 1.09004 * 109.47063 * 64.85780 * 24 23 22 41 41 H 1.08993 * 109.47478 * 64.98710 * 25 24 23 42 42 H 1.09004 * 109.46760 * 184.98977 * 25 24 23 43 43 H 1.09005 * 109.46878 * 304.97989 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4987 1.4447 -0.1350 5 6 4.0716 1.3592 -1.3759 6 1 5.1329 1.5215 -1.4931 7 6 3.2882 1.0639 -2.4832 8 7 1.9881 0.9100 -2.3474 9 14 4.0792 0.8849 -4.1659 10 1 5.5433 1.1046 -4.0506 11 1 3.8227 -0.4804 -4.6907 12 1 3.5002 1.8889 -5.0944 13 6 4.3446 1.5385 1.0574 14 6 4.5116 2.9858 1.4424 15 6 3.7600 3.5185 2.4721 16 6 3.9130 4.8460 2.8262 17 7 3.1071 5.4139 3.9300 18 8 2.3101 4.7117 4.5259 19 8 3.2408 6.5835 4.2424 20 6 4.8187 5.6441 2.1514 21 6 5.5772 5.1146 1.1254 22 6 5.4202 3.7843 0.7635 23 8 6.1605 3.2628 -0.2499 24 6 6.9950 4.1676 -0.9759 25 6 7.6524 3.4295 -2.1438 26 1 -0.3633 -1.0238 0.0889 27 1 -0.3634 0.5889 0.8421 28 1 -0.3633 0.4348 -0.9312 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7610 1.9266 0.9359 32 1 1.5969 1.9845 -0.8355 33 1 1.4406 0.7040 -3.1212 34 1 5.3215 1.1039 0.8449 35 1 3.8764 0.9957 1.8785 36 1 3.0523 2.8972 3.0009 37 1 4.9362 6.6809 2.4295 38 1 6.2878 5.7369 0.6020 39 1 6.3915 4.9902 -1.3595 40 1 7.7667 4.5608 -0.3140 41 1 6.8860 3.1130 -2.8512 42 1 8.3562 4.0948 -2.6440 43 1 8.1835 2.5549 -1.7680 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175242628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:29 Heat of formation + Delta-G solvation = 9.750694 kcal Electronic energy + Delta-G solvation = -26519.700979 eV Core-core repulsion = 22762.859737 eV Total energy + Delta-G solvation = -3756.841242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.88870 -40.27740 -37.65513 -36.33970 -36.22105 -32.99211 -31.80832 -31.59299 -30.65081 -29.99719 -26.12537 -25.75270 -25.47670 -23.99040 -22.28968 -21.63897 -21.07446 -19.85803 -18.45587 -18.39899 -18.17825 -17.25322 -16.81279 -16.14700 -15.93725 -15.12183 -14.65765 -14.11880 -13.85220 -13.58053 -13.31909 -13.28601 -13.16489 -12.87577 -12.47826 -12.17781 -12.10693 -11.89196 -11.43706 -11.33008 -11.18048 -11.01566 -10.91442 -10.90366 -10.85029 -10.76788 -10.73095 -10.31286 -10.04806 -9.88350 -9.71718 -9.41922 -9.11832 -8.39760 -8.30512 -6.90241 -5.63433 -3.14789 0.18896 1.14991 1.68316 1.73494 3.15128 3.31071 3.35895 3.40289 3.53540 4.44046 4.51023 4.60205 4.85308 4.91747 4.98619 5.10998 5.20108 5.33604 5.43202 5.47929 5.59222 5.76277 5.79463 5.84720 5.90505 6.03666 6.16913 6.26192 6.32212 6.36839 6.52574 6.57332 6.67877 6.70492 6.74608 7.01552 7.32665 7.35908 7.40552 7.72359 7.91917 7.93920 8.15320 8.43025 9.25574 9.81955 10.24134 11.27340 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.005863 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.467263 B = 4774.409795 C = 6708.667460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C 0.170 3.830 4 N -0.589 5.589 5 C -0.230 4.230 6 H 0.084 0.916 7 C -0.012 4.012 8 N -0.905 5.905 9 Si 0.905 3.095 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.294 1.294 13 C 0.191 3.809 14 C -0.116 4.116 15 C -0.018 4.018 16 C -0.090 4.090 17 N 0.042 4.958 18 O -0.173 6.173 19 O -0.185 6.185 20 C -0.027 4.027 21 C -0.220 4.220 22 C 0.206 3.794 23 O -0.276 6.276 24 C 0.052 3.948 25 C -0.153 4.153 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.006 0.994 31 H -0.005 1.005 32 H 0.103 0.897 33 H 0.247 0.753 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.630 5.890 4.338 11.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C 0.046 3.954 4 N -0.308 5.308 5 C -0.359 4.359 6 H 0.101 0.899 7 C -0.207 4.207 8 N -0.554 5.554 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.221 1.221 13 C 0.062 3.938 14 C -0.121 4.121 15 C -0.038 4.038 16 C -0.174 4.174 17 N 0.557 4.443 18 O -0.387 6.387 19 O -0.396 6.396 20 C -0.047 4.047 21 C -0.239 4.239 22 C 0.157 3.843 23 O -0.186 6.186 24 C -0.024 4.024 25 C -0.210 4.210 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.025 0.975 31 H 0.013 0.987 32 H 0.121 0.879 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.169 0.831 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.920 5.354 3.539 10.989 hybrid contribution 0.081 0.469 -0.661 0.814 sum 9.001 5.823 2.878 11.100 Atomic orbital electron populations 1.21572 0.98525 0.98587 1.00423 1.22109 0.93031 1.00018 0.99971 1.21150 0.81818 0.95212 0.97252 1.44293 1.01680 1.83709 1.01078 1.19565 0.93489 1.39138 0.83707 0.89851 1.24851 0.95891 1.01943 0.98011 1.70218 1.03171 1.54487 1.27507 0.86163 0.78249 0.77363 0.84621 1.20567 1.21855 1.22122 1.19669 0.96622 0.86780 0.90696 1.20792 0.94567 1.02401 0.94374 1.20741 0.96699 0.91763 0.94638 1.20932 1.03600 0.95924 0.96955 1.43584 0.99547 1.00390 1.00807 1.94516 1.31476 1.59324 1.53430 1.94474 1.73051 1.01190 1.70913 1.20588 0.91490 1.00005 0.92577 1.21175 1.05423 0.95353 1.01981 1.19179 0.88266 0.90870 0.85971 1.86352 1.53591 1.36671 1.42028 1.22875 0.92764 0.92992 0.93725 1.21782 1.01097 1.01198 0.96947 0.95365 0.95288 0.92545 0.88790 0.97505 0.98722 0.87901 0.94126 0.91311 0.93074 0.83076 0.83585 0.83902 0.91770 0.92249 0.90761 0.90723 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.91 37.16 0.37 -2.27 16 2 C -0.11 -2.51 5.36 -26.73 -0.14 -2.65 16 3 C 0.17 3.94 5.00 -4.04 -0.02 3.92 16 4 N -0.59 -13.39 2.53 -174.61 -0.44 -13.83 16 5 C -0.23 -5.64 9.32 -15.06 -0.14 -5.78 16 6 H 0.08 2.00 6.52 -52.49 -0.34 1.66 16 7 C -0.01 -0.30 5.21 -17.43 -0.09 -0.39 16 8 N -0.91 -23.65 7.31 55.49 0.41 -23.25 16 9 Si 0.90 20.48 29.55 -169.99 -5.02 15.46 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.19 3.60 5.43 -5.20 -0.03 3.57 16 14 C -0.12 -1.98 5.47 -104.48 -0.57 -2.55 16 15 C -0.02 -0.29 9.17 -39.61 -0.36 -0.66 16 16 C -0.09 -1.43 6.85 -79.93 -0.55 -1.98 16 17 N 0.04 0.72 4.45 33.97 0.15 0.88 16 18 O -0.17 -3.10 18.44 -29.46 -0.54 -3.65 16 19 O -0.18 -3.15 18.44 -29.46 -0.54 -3.69 16 20 C -0.03 -0.37 9.55 -39.60 -0.38 -0.74 16 21 C -0.22 -2.88 9.03 -39.43 -0.36 -3.23 16 22 C 0.21 3.25 6.65 -39.22 -0.26 2.99 16 23 O -0.28 -4.38 7.64 -19.43 -0.15 -4.53 16 24 C 0.05 0.61 5.47 37.16 0.20 0.81 16 25 C -0.15 -1.74 10.28 37.16 0.38 -1.36 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 2.40 6.08 -51.93 -0.32 2.08 16 30 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 31 H -0.01 -0.12 8.03 -51.93 -0.42 -0.54 16 32 H 0.10 2.71 5.89 -51.93 -0.31 2.40 16 33 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16 34 H 0.07 1.28 7.73 -51.93 -0.40 0.88 16 35 H 0.05 0.90 7.97 -51.93 -0.41 0.49 16 36 H 0.15 2.38 7.58 -52.49 -0.40 1.99 16 37 H 0.15 1.68 7.60 -52.49 -0.40 1.29 16 38 H 0.14 1.43 6.33 -52.49 -0.33 1.09 16 39 H 0.06 0.72 7.62 -51.93 -0.40 0.32 16 40 H 0.06 0.54 7.71 -51.93 -0.40 0.14 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -27.40 356.77 -8.93 -36.33 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.21 Total: 1.24 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.95 Total: -10.33 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.12 Total: -36.20 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.24 Total: -11.87 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.40 -8.93 -36.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175242628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.080 kcal (2) G-P(sol) polarization free energy of solvation -27.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds