Wall clock time and date at job start Tue Mar 31 2020 09:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 N 1.46501 * 109.47129 * 185.61048 * 3 2 1 5 5 C 1.36940 * 119.99739 * 83.94887 * 4 3 2 6 6 H 1.08001 * 119.99783 * 170.05085 * 5 4 3 7 7 C 1.38815 * 120.00218 * 350.04599 * 5 4 3 8 8 N 1.31617 * 119.99810 * 2.26308 * 7 5 4 9 9 Si 1.86792 * 119.99943 * 182.26358 * 7 5 4 10 10 H 1.48495 * 109.47535 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47009 * 120.00180 * 9 7 5 12 12 H 1.48507 * 109.47183 * 239.99813 * 9 7 5 13 13 C 1.46498 * 119.99979 * 263.94585 * 4 3 2 14 14 C 1.50698 * 109.47310 * 275.51116 * 13 4 3 15 15 C 1.38169 * 120.02514 * 100.61821 * 14 13 4 16 16 C 1.38237 * 120.05842 * 179.97438 * 15 14 13 17 17 N 1.48004 * 119.94752 * 180.02562 * 16 15 14 18 18 O 1.21795 * 119.99828 * 0.02562 * 17 16 15 19 19 O 1.21799 * 119.99933 * 180.02562 * 17 16 15 20 20 C 1.38294 * 120.11216 * 359.97438 * 16 15 14 21 21 C 1.38132 * 120.05190 * 359.71329 * 20 16 15 22 22 C 1.38705 * 120.03258 * 280.60252 * 14 13 4 23 23 O 1.35903 * 120.05618 * 0.02562 * 22 14 13 24 24 C 1.42901 * 117.00107 * 175.00832 * 23 22 14 25 25 C 1.52999 * 109.46877 * 184.86099 * 24 23 22 26 26 H 1.09000 * 109.47125 * 184.96429 * 1 2 3 27 27 H 1.08995 * 109.47647 * 304.96614 * 1 2 3 28 28 H 1.09004 * 109.47066 * 64.96995 * 1 2 3 29 29 H 1.08994 * 109.47760 * 239.99647 * 2 1 3 30 30 H 1.09005 * 109.46739 * 119.99491 * 2 1 3 31 31 H 1.09000 * 109.47437 * 65.61084 * 3 2 1 32 32 H 1.09004 * 109.47045 * 305.60965 * 3 2 1 33 33 H 0.97002 * 120.00453 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46740 * 155.51324 * 13 4 3 35 35 H 1.08991 * 109.46996 * 35.51915 * 13 4 3 36 36 H 1.08001 * 119.97092 * 359.97438 * 15 14 13 37 37 H 1.07994 * 119.97448 * 179.97438 * 20 16 15 38 38 H 1.07995 * 120.02660 * 180.29865 * 21 20 16 39 39 H 1.08997 * 109.46887 * 304.85746 * 24 23 22 40 40 H 1.09004 * 109.47063 * 64.85780 * 24 23 22 41 41 H 1.08993 * 109.47478 * 64.98710 * 25 24 23 42 42 H 1.09004 * 109.46760 * 184.98977 * 25 24 23 43 43 H 1.09005 * 109.46878 * 304.97989 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4987 1.4447 -0.1350 5 6 4.0716 1.3592 -1.3759 6 1 5.1329 1.5215 -1.4931 7 6 3.2882 1.0639 -2.4832 8 7 1.9881 0.9100 -2.3474 9 14 4.0792 0.8849 -4.1659 10 1 5.5433 1.1046 -4.0506 11 1 3.8227 -0.4804 -4.6907 12 1 3.5002 1.8889 -5.0944 13 6 4.3446 1.5385 1.0574 14 6 4.5116 2.9858 1.4424 15 6 3.7600 3.5185 2.4721 16 6 3.9130 4.8460 2.8262 17 7 3.1071 5.4139 3.9300 18 8 2.3101 4.7117 4.5259 19 8 3.2408 6.5835 4.2424 20 6 4.8187 5.6441 2.1514 21 6 5.5772 5.1146 1.1254 22 6 5.4202 3.7843 0.7635 23 8 6.1605 3.2628 -0.2499 24 6 6.9950 4.1676 -0.9759 25 6 7.6524 3.4295 -2.1438 26 1 -0.3633 -1.0238 0.0889 27 1 -0.3634 0.5889 0.8421 28 1 -0.3633 0.4348 -0.9312 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7610 1.9266 0.9359 32 1 1.5969 1.9845 -0.8355 33 1 1.4406 0.7040 -3.1212 34 1 5.3215 1.1039 0.8449 35 1 3.8764 0.9957 1.8785 36 1 3.0523 2.8972 3.0009 37 1 4.9362 6.6809 2.4295 38 1 6.2878 5.7369 0.6020 39 1 6.3915 4.9902 -1.3595 40 1 7.7667 4.5608 -0.3140 41 1 6.8860 3.1130 -2.8512 42 1 8.3562 4.0948 -2.6440 43 1 8.1835 2.5549 -1.7680 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175242628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:28 Heat of formation + Delta-G solvation = -1.938593 kcal Electronic energy + Delta-G solvation = -26520.207865 eV Core-core repulsion = 22762.859737 eV Total energy + Delta-G solvation = -3757.348127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.18765 -41.46075 -38.84857 -37.96878 -37.60633 -34.43724 -33.40507 -32.86218 -31.96172 -31.36983 -27.60344 -27.31862 -27.02431 -25.04080 -23.87474 -22.77617 -22.48591 -21.59843 -19.76664 -19.72185 -19.29242 -18.61472 -18.55309 -17.31631 -17.14758 -16.77156 -15.83779 -15.59626 -15.38733 -14.99246 -14.87373 -14.74131 -14.27642 -14.23770 -13.79408 -13.33512 -13.31148 -13.17250 -13.00852 -12.85007 -12.67959 -12.56727 -12.53993 -12.25752 -12.24016 -12.09384 -12.04612 -11.81078 -11.72155 -11.60890 -11.49355 -11.27007 -10.30997 -10.21066 -9.59231 -8.71988 -7.53951 -5.05416 -1.09056 -0.01069 0.41825 0.47696 1.48046 1.51386 1.58567 2.08335 2.33178 2.60953 3.36246 3.47326 3.53420 3.68213 3.83886 3.91876 4.07553 4.13585 4.20879 4.33475 4.39401 4.58559 4.64857 4.65588 4.74089 4.79239 4.82978 4.92699 4.95310 4.98623 5.00813 5.05540 5.24634 5.27367 5.30683 5.45501 5.60380 5.61687 5.80534 6.02449 6.28053 6.28893 6.53968 6.59672 7.34720 8.00324 8.39303 9.35049 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.005863 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.467263 B = 4774.409795 C = 6708.667460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.180 3.820 4 N -0.604 5.604 5 C -0.222 4.222 6 H 0.087 0.913 7 C -0.063 4.063 8 N -0.923 5.923 9 Si 0.954 3.046 10 H -0.264 1.264 11 H -0.303 1.303 12 H -0.303 1.303 13 C 0.194 3.806 14 C -0.136 4.136 15 C -0.019 4.019 16 C -0.105 4.105 17 N 0.043 4.957 18 O -0.209 6.209 19 O -0.172 6.172 20 C -0.013 4.013 21 C -0.205 4.205 22 C 0.202 3.798 23 O -0.301 6.301 24 C 0.041 3.959 25 C -0.152 4.152 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.012 0.988 31 H 0.002 0.998 32 H 0.071 0.929 33 H 0.237 0.763 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.148 0.852 37 H 0.175 0.825 38 H 0.183 0.817 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.107 0.893 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.619 7.740 4.727 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.055 3.945 4 N -0.324 5.324 5 C -0.352 4.352 6 H 0.104 0.896 7 C -0.255 4.255 8 N -0.573 5.573 9 Si 0.785 3.215 10 H -0.189 1.189 11 H -0.231 1.231 12 H -0.231 1.231 13 C 0.067 3.933 14 C -0.140 4.140 15 C -0.039 4.039 16 C -0.190 4.190 17 N 0.555 4.445 18 O -0.415 6.415 19 O -0.388 6.388 20 C -0.032 4.032 21 C -0.224 4.224 22 C 0.153 3.847 23 O -0.212 6.212 24 C -0.033 4.033 25 C -0.209 4.209 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.020 0.980 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.165 0.835 37 H 0.192 0.808 38 H 0.200 0.800 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.061 0.939 42 H 0.126 0.874 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.912 7.167 3.981 13.649 hybrid contribution -0.384 -0.012 -0.745 0.838 sum 10.528 7.155 3.236 13.134 Atomic orbital electron populations 1.21460 0.96672 0.99831 1.00208 1.21953 0.94713 0.99209 0.98502 1.20891 0.82339 0.95207 0.96064 1.44389 1.01797 1.84445 1.01725 1.19739 0.93536 1.37483 0.84412 0.89560 1.25425 0.96455 1.03134 1.00508 1.70417 1.03819 1.55913 1.27194 0.85368 0.78453 0.76082 0.81587 1.18863 1.23117 1.23122 1.19660 0.95840 0.88366 0.89475 1.20459 0.96496 1.01220 0.95874 1.20681 0.96415 0.92274 0.94531 1.21056 1.04508 0.96136 0.97257 1.43749 0.99487 1.00316 1.00964 1.94525 1.32805 1.59549 1.54612 1.94444 1.72517 1.01192 1.70653 1.20987 0.89773 1.00961 0.91494 1.21522 1.05255 0.94373 1.01245 1.19345 0.87853 0.91817 0.85690 1.86323 1.54066 1.38662 1.42162 1.23227 0.93250 0.92648 0.94147 1.21819 1.00725 1.01955 0.96421 0.93659 0.93785 0.94089 0.91991 0.96944 0.97972 0.91089 0.95279 0.91484 0.92440 0.83470 0.80758 0.79966 0.90940 0.88719 0.93869 0.87414 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.91 71.98 0.71 -4.18 16 2 C -0.10 -4.73 5.36 30.59 0.16 -4.57 16 3 C 0.18 8.47 5.00 86.38 0.43 8.90 16 4 N -0.60 -27.70 2.53 -706.34 -1.79 -29.48 16 5 C -0.22 -10.97 9.32 84.03 0.78 -10.19 16 6 H 0.09 4.14 6.52 -2.91 -0.02 4.12 16 7 C -0.06 -3.25 5.21 84.86 0.44 -2.80 16 8 N -0.92 -49.81 7.31 21.65 0.16 -49.65 16 9 Si 0.95 42.84 29.55 68.60 2.03 44.86 16 10 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 13 C 0.19 7.28 5.43 85.63 0.47 7.74 16 14 C -0.14 -4.50 5.47 -19.77 -0.11 -4.61 16 15 C -0.02 -0.60 9.17 22.25 0.20 -0.39 16 16 C -0.11 -3.15 6.85 36.39 0.25 -2.90 16 17 N 0.04 1.43 4.45 -46.44 -0.21 1.22 16 18 O -0.21 -7.46 18.44 18.89 0.35 -7.12 16 19 O -0.17 -5.47 18.44 18.89 0.35 -5.12 16 20 C -0.01 -0.30 9.55 22.26 0.21 -0.09 16 21 C -0.20 -4.53 9.03 22.37 0.20 -4.33 16 22 C 0.20 5.91 6.65 22.50 0.15 6.06 16 23 O -0.30 -8.93 7.64 -92.46 -0.71 -9.64 16 24 C 0.04 0.83 5.47 71.98 0.39 1.22 16 25 C -0.15 -3.09 10.28 71.98 0.74 -2.35 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.06 3.25 6.08 -2.39 -0.01 3.24 16 30 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.00 0.09 8.03 -2.39 -0.02 0.07 16 32 H 0.07 3.85 5.89 -2.38 -0.01 3.83 16 33 H 0.24 12.81 8.31 -92.71 -0.77 12.04 16 34 H 0.07 2.50 7.73 -2.38 -0.02 2.48 16 35 H 0.06 2.04 7.97 -2.39 -0.02 2.02 16 36 H 0.15 4.68 7.58 -2.91 -0.02 4.66 16 37 H 0.18 3.15 7.60 -2.91 -0.02 3.13 16 38 H 0.18 2.56 6.33 -2.91 -0.02 2.55 16 39 H 0.07 1.34 7.62 -2.39 -0.02 1.32 16 40 H 0.09 1.26 7.71 -2.39 -0.02 1.24 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -60.65 356.77 6.24 -54.41 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.01 Total: 12.99 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 5.04 Total: -12.48 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -1.83 Total: -77.92 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.01 Total: -21.87 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -60.65 6.24 -54.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175242628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.473 kcal (2) G-P(sol) polarization free energy of solvation -60.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds