Wall clock time and date at job start Tue Mar 31 2020 09:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47373 * 2 1 4 4 C 1.52995 * 109.47250 * 120.00480 * 2 1 3 5 5 O 1.42903 * 109.47425 * 64.99420 * 4 2 1 6 6 N 1.41603 * 113.99924 * 180.02562 * 5 4 2 7 7 C 1.34778 * 119.99817 * 180.02562 * 6 5 4 8 8 O 1.21584 * 119.99654 * 359.97438 * 7 6 5 9 9 N 1.34769 * 119.99808 * 180.02562 * 7 6 5 10 10 C 1.46508 * 120.00011 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47103 * 179.97438 * 10 9 7 12 12 C 1.38299 * 119.93247 * 90.00118 * 11 10 9 13 13 C 1.38101 * 120.07425 * 179.97438 * 12 11 10 14 14 C 1.38886 * 119.92536 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47517 * 59.99414 * 20 18 16 22 22 H 1.48505 * 109.47332 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46989 * 299.99567 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38106 * 119.92542 * 359.44577 * 24 14 13 26 26 H 1.08993 * 109.47119 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46751 * 299.99948 * 1 2 3 28 28 H 1.08997 * 109.47214 * 59.99748 * 1 2 3 29 29 H 1.09006 * 109.47200 * 239.99904 * 2 1 3 30 30 H 1.09005 * 109.47191 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47157 * 300.00019 * 3 2 1 32 32 H 1.08994 * 109.47431 * 60.00025 * 3 2 1 33 33 H 1.09001 * 109.47240 * 304.99546 * 4 2 1 34 34 H 1.09006 * 109.47416 * 185.00006 * 4 2 1 35 35 H 0.96996 * 120.00091 * 359.97438 * 6 5 4 36 36 H 0.97001 * 120.00514 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.46632 * 59.99915 * 10 9 7 38 38 H 1.08996 * 109.47144 * 299.99646 * 10 9 7 39 39 H 1.07999 * 119.96503 * 0.02562 * 12 11 10 40 40 H 1.07992 * 120.03608 * 180.02562 * 13 12 11 41 41 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 43 43 H 1.07997 * 119.96326 * 180.27708 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.6619 -2.0982 1.1919 6 7 2.0875 -2.8592 2.3077 7 6 1.7962 -4.1733 2.3778 8 8 1.1676 -4.7051 1.4832 9 7 2.2007 -4.8974 3.4400 10 6 1.8836 -6.3257 3.5165 11 6 2.4455 -6.8973 4.7926 12 6 1.6785 -6.9013 5.9434 13 6 2.1903 -7.4249 7.1144 14 6 3.4770 -7.9474 7.1356 15 8 3.9827 -8.4632 8.2849 16 6 3.1467 -8.5435 9.3397 17 1 2.1509 -8.1310 9.2722 18 6 3.5656 -9.1556 10.5113 19 7 4.7785 -9.6585 10.5934 20 14 2.4072 -9.2674 11.9724 21 1 1.1927 -10.0287 11.5842 22 1 3.0896 -9.9629 13.0931 23 1 2.0181 -7.9000 12.4013 24 6 4.2470 -7.9361 5.9799 25 6 3.7273 -7.4163 4.8107 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6055 -0.2618 2.1369 34 1 3.1264 -0.6444 1.2951 35 1 2.5892 -2.4349 3.0212 36 1 2.7019 -4.4730 4.1539 37 1 2.3235 -6.8416 2.6631 38 1 0.8019 -6.4589 3.5037 39 1 0.6779 -6.4953 5.9262 40 1 1.5907 -7.4282 8.0125 41 1 5.0716 -10.0863 11.4131 42 1 5.2495 -8.3376 5.9944 43 1 4.3240 -7.4113 3.9106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269641588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:00 Heat of formation + Delta-G solvation = -36.413433 kcal Electronic energy + Delta-G solvation = -23811.906033 eV Core-core repulsion = 20053.062964 eV Total energy + Delta-G solvation = -3758.843069 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.89150 -39.10327 -38.14482 -36.86230 -35.44637 -34.35932 -32.46697 -31.93238 -30.29309 -29.52121 -27.58879 -26.44226 -25.77564 -24.57990 -22.07015 -21.46300 -20.68079 -20.59977 -18.69761 -18.20847 -18.05661 -17.00663 -16.37599 -15.60146 -15.33052 -15.12467 -14.69332 -14.61663 -14.45264 -14.23133 -13.90078 -13.66761 -13.56259 -13.37422 -12.93274 -12.81417 -12.78838 -12.58879 -12.15329 -11.78500 -11.67481 -11.57446 -11.40907 -11.22874 -11.01894 -10.96634 -10.80498 -10.72292 -10.51476 -10.21366 -9.45114 -9.20209 -8.92784 -8.78734 -8.30190 -7.35468 -6.54670 -4.13592 1.42900 2.11509 2.17772 3.07565 3.08993 3.11849 3.22460 3.82889 3.89062 4.27518 4.32634 4.37780 4.53133 4.68944 4.94645 4.99635 5.00921 5.12552 5.14414 5.21773 5.23145 5.40957 5.43324 5.48405 5.61984 5.65456 5.80705 5.81301 5.88825 5.93607 6.10555 6.33809 6.50000 6.56576 6.58692 6.78187 6.82576 6.95500 7.13437 7.25933 7.33453 7.69654 7.89831 7.93067 8.61678 8.90490 9.58372 10.62656 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.001970 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.067726 B =14206.910742 C =14522.901567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.034 3.966 5 O -0.128 6.128 6 N -0.620 5.620 7 C 0.718 3.282 8 O -0.578 6.578 9 N -0.729 5.729 10 C 0.201 3.799 11 C -0.216 4.216 12 C -0.049 4.049 13 C -0.238 4.238 14 C 0.161 3.839 15 O -0.173 6.173 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.041 3.959 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.196 4.196 25 C -0.052 4.052 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.402 0.598 36 H 0.398 0.602 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.272 0.728 42 H 0.118 0.882 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 17.971 -14.447 23.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.044 4.044 5 O -0.131 6.131 6 N -0.325 5.325 7 C 0.418 3.582 8 O -0.454 6.454 9 N -0.388 5.388 10 C 0.079 3.921 11 C -0.217 4.217 12 C -0.068 4.068 13 C -0.257 4.257 14 C 0.106 3.894 15 O -0.075 6.075 16 C -0.470 4.470 17 H 0.111 0.889 18 C -0.164 4.164 19 N -0.493 5.493 20 Si 0.767 3.233 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.215 4.215 25 C -0.071 4.071 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.241 0.759 36 H 0.232 0.768 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.146 0.854 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.670 17.163 -15.212 23.405 hybrid contribution 0.026 0.674 1.581 1.719 sum -4.643 17.836 -13.631 22.924 Atomic orbital electron populations 1.21852 0.94097 1.02935 1.01805 1.21055 0.97121 0.95704 0.96873 1.21790 1.01235 0.94607 1.02601 1.23144 0.99827 0.81609 0.99779 1.90563 1.76345 1.19249 1.26913 1.46229 1.62360 1.06010 1.17877 1.15470 0.80304 0.79032 0.83366 1.90934 1.45041 1.70019 1.39407 1.45382 1.60886 1.10513 1.22066 1.19884 0.99634 0.77170 0.95434 1.19198 0.96616 1.11128 0.94777 1.20662 0.98052 0.96232 0.91811 1.21162 0.97357 1.08016 0.99205 1.19451 0.91533 0.91068 0.87333 1.83976 1.38199 1.69200 1.16138 1.21313 0.96736 1.39288 0.89676 0.88938 1.25323 0.97046 0.95630 0.98451 1.70023 1.16766 1.34533 1.27974 0.85761 0.79229 0.78953 0.79397 1.19400 1.20207 1.19443 1.20217 1.00997 1.09141 0.91194 1.20553 0.94105 0.95954 0.96513 0.91564 0.92629 0.92353 0.89865 0.92289 0.91593 0.92273 0.92048 0.92077 0.75863 0.76806 0.91435 0.91475 0.87295 0.85417 0.91806 0.86364 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.09 37.16 0.34 -0.73 16 2 C -0.09 -0.58 3.16 -90.63 -0.29 -0.87 16 3 C -0.14 -0.67 9.19 37.15 0.34 -0.33 16 4 C 0.03 0.26 5.61 37.16 0.21 0.47 16 5 O -0.13 -1.53 10.64 -29.62 -0.32 -1.84 16 6 N -0.62 -6.97 6.39 27.63 0.18 -6.79 16 7 C 0.72 10.34 8.71 -86.92 -0.76 9.59 16 8 O -0.58 -10.99 16.75 -12.86 -0.22 -11.20 16 9 N -0.73 -9.05 5.55 -66.42 -0.37 -9.42 16 10 C 0.20 2.79 5.80 -5.19 -0.03 2.76 16 11 C -0.22 -3.35 5.25 -104.58 -0.55 -3.90 16 12 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 13 C -0.24 -4.82 9.17 -39.39 -0.36 -5.18 16 14 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 15 O -0.17 -4.73 9.76 0.05 0.00 -4.73 16 16 C -0.39 -10.59 9.49 30.89 0.29 -10.30 16 17 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -24.43 13.67 55.48 0.76 -23.67 16 20 Si 0.94 19.83 29.55 -169.99 -5.02 14.81 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.20 -3.86 9.99 -39.39 -0.39 -4.26 16 25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 26 H 0.07 0.61 7.82 -51.93 -0.41 0.20 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.40 3.00 8.56 -40.82 -0.35 2.65 16 36 H 0.40 4.09 8.48 -40.82 -0.35 3.74 16 37 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -33.17 370.11 -8.03 -41.19 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.30 Total: 6.89 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.32 Total: -10.81 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.57 Total: -39.88 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.53 Total: -17.78 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.17 -8.03 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269641588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.779 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds