Wall clock time and date at job start Tue Mar 31 2020 09:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47373 * 2 1 4 4 C 1.52995 * 109.47250 * 120.00480 * 2 1 3 5 5 O 1.42903 * 109.47425 * 64.99420 * 4 2 1 6 6 N 1.41603 * 113.99924 * 180.02562 * 5 4 2 7 7 C 1.34778 * 119.99817 * 180.02562 * 6 5 4 8 8 O 1.21584 * 119.99654 * 359.97438 * 7 6 5 9 9 N 1.34769 * 119.99808 * 180.02562 * 7 6 5 10 10 C 1.46508 * 120.00011 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47103 * 179.97438 * 10 9 7 12 12 C 1.38299 * 119.93247 * 90.00118 * 11 10 9 13 13 C 1.38101 * 120.07425 * 179.97438 * 12 11 10 14 14 C 1.38886 * 119.92536 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47517 * 59.99414 * 20 18 16 22 22 H 1.48505 * 109.47332 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46989 * 299.99567 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38106 * 119.92542 * 359.44577 * 24 14 13 26 26 H 1.08993 * 109.47119 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46751 * 299.99948 * 1 2 3 28 28 H 1.08997 * 109.47214 * 59.99748 * 1 2 3 29 29 H 1.09006 * 109.47200 * 239.99904 * 2 1 3 30 30 H 1.09005 * 109.47191 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47157 * 300.00019 * 3 2 1 32 32 H 1.08994 * 109.47431 * 60.00025 * 3 2 1 33 33 H 1.09001 * 109.47240 * 304.99546 * 4 2 1 34 34 H 1.09006 * 109.47416 * 185.00006 * 4 2 1 35 35 H 0.96996 * 120.00091 * 359.97438 * 6 5 4 36 36 H 0.97001 * 120.00514 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.46632 * 59.99915 * 10 9 7 38 38 H 1.08996 * 109.47144 * 299.99646 * 10 9 7 39 39 H 1.07999 * 119.96503 * 0.02562 * 12 11 10 40 40 H 1.07992 * 120.03608 * 180.02562 * 13 12 11 41 41 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 43 43 H 1.07997 * 119.96326 * 180.27708 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.6619 -2.0982 1.1919 6 7 2.0875 -2.8592 2.3077 7 6 1.7962 -4.1733 2.3778 8 8 1.1676 -4.7051 1.4832 9 7 2.2007 -4.8974 3.4400 10 6 1.8836 -6.3257 3.5165 11 6 2.4455 -6.8973 4.7926 12 6 1.6785 -6.9013 5.9434 13 6 2.1903 -7.4249 7.1144 14 6 3.4770 -7.9474 7.1356 15 8 3.9827 -8.4632 8.2849 16 6 3.1467 -8.5435 9.3397 17 1 2.1509 -8.1310 9.2722 18 6 3.5656 -9.1556 10.5113 19 7 4.7785 -9.6585 10.5934 20 14 2.4072 -9.2674 11.9724 21 1 1.1927 -10.0287 11.5842 22 1 3.0896 -9.9629 13.0931 23 1 2.0181 -7.9000 12.4013 24 6 4.2470 -7.9361 5.9799 25 6 3.7273 -7.4163 4.8107 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6055 -0.2618 2.1369 34 1 3.1264 -0.6444 1.2951 35 1 2.5892 -2.4349 3.0212 36 1 2.7019 -4.4730 4.1539 37 1 2.3235 -6.8416 2.6631 38 1 0.8019 -6.4589 3.5037 39 1 0.6779 -6.4953 5.9262 40 1 1.5907 -7.4282 8.0125 41 1 5.0716 -10.0863 11.4131 42 1 5.2495 -8.3376 5.9944 43 1 4.3240 -7.4113 3.9106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269641588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:59 Heat of formation + Delta-G solvation = -58.211444 kcal Electronic energy + Delta-G solvation = -23812.851266 eV Core-core repulsion = 20053.062964 eV Total energy + Delta-G solvation = -3759.788301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09520 -40.62365 -39.00016 -38.40115 -36.13487 -35.63742 -34.28876 -33.03393 -31.80827 -30.87488 -28.06726 -27.66561 -26.97922 -25.97818 -23.62395 -22.53005 -22.09129 -21.26718 -19.88292 -19.62867 -19.17734 -18.72100 -17.13136 -16.66139 -16.54150 -16.36703 -16.17347 -15.96654 -15.60421 -15.45565 -15.13959 -14.99495 -14.78171 -14.36748 -14.22870 -14.09125 -13.65975 -13.49356 -13.31795 -13.01114 -13.00591 -12.52258 -12.38923 -12.33550 -12.23226 -12.13226 -12.12228 -11.78884 -11.61205 -11.44312 -11.18787 -10.79136 -10.30917 -9.79878 -9.72678 -9.00844 -8.47232 -6.15339 0.36500 0.60262 0.83576 1.36752 1.46754 1.52422 2.10556 2.18089 2.69562 2.97901 3.22234 3.50835 3.62040 3.79999 3.86353 3.88981 4.06069 4.15801 4.20047 4.41605 4.49220 4.52880 4.59303 4.63398 4.75315 4.78638 4.83147 4.96071 4.99534 5.06292 5.15954 5.18779 5.29077 5.34323 5.38137 5.41278 5.52170 5.64767 5.71177 5.77570 5.99181 6.02585 6.18302 6.97515 6.98268 7.56709 7.76953 8.75233 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.001970 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.067726 B =14206.910742 C =14522.901567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.140 4.140 4 C 0.029 3.971 5 O -0.156 6.156 6 N -0.606 5.606 7 C 0.718 3.282 8 O -0.627 6.627 9 N -0.717 5.717 10 C 0.206 3.794 11 C -0.181 4.181 12 C -0.043 4.043 13 C -0.245 4.245 14 C 0.123 3.877 15 O -0.229 6.229 16 C -0.414 4.414 17 H 0.104 0.896 18 C -0.022 4.022 19 N -0.918 5.918 20 Si 1.017 2.983 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.256 1.256 24 C -0.205 4.205 25 C -0.041 4.041 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.421 0.579 36 H 0.411 0.589 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.273 0.727 42 H 0.115 0.885 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.631 20.309 -15.826 26.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.197 4.197 4 C -0.048 4.048 5 O -0.160 6.160 6 N -0.311 5.311 7 C 0.418 3.582 8 O -0.507 6.507 9 N -0.377 5.377 10 C 0.083 3.917 11 C -0.183 4.183 12 C -0.061 4.061 13 C -0.264 4.264 14 C 0.072 3.928 15 O -0.135 6.135 16 C -0.490 4.490 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.556 5.556 20 Si 0.836 3.164 21 H -0.183 1.183 22 H -0.198 1.198 23 H -0.180 1.180 24 C -0.225 4.225 25 C -0.059 4.059 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.264 0.736 36 H 0.248 0.752 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.158 0.842 40 H 0.138 0.862 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.958 19.578 -16.612 26.359 hybrid contribution 0.374 0.157 1.602 1.653 sum -5.585 19.735 -15.010 25.416 Atomic orbital electron populations 1.21838 0.94643 1.01416 1.02680 1.21100 0.96670 0.96829 0.96128 1.21760 1.01661 0.92991 1.03285 1.23414 1.00990 0.79621 1.00739 1.90565 1.76908 1.21298 1.27209 1.45967 1.61577 1.05310 1.18262 1.15536 0.79910 0.79794 0.82948 1.90908 1.47262 1.71295 1.41205 1.45040 1.60680 1.09873 1.22065 1.19783 0.99841 0.77912 0.94149 1.19437 0.95683 1.08155 0.94981 1.20958 0.99419 0.95057 0.90691 1.21251 0.96471 1.08276 1.00405 1.20013 0.93288 0.92202 0.87273 1.83946 1.39608 1.72322 1.17633 1.21794 0.97354 1.39598 0.90237 0.87855 1.26576 0.98820 0.95101 1.01465 1.70170 1.19241 1.37179 1.29022 0.84664 0.76941 0.79549 0.75200 1.18285 1.19812 1.18034 1.20449 1.00975 1.09520 0.91516 1.20898 0.94588 0.94107 0.96318 0.94179 0.91958 0.91342 0.90827 0.91581 0.90962 0.91567 0.90680 0.90498 0.73611 0.75239 0.90837 0.91083 0.84184 0.86160 0.91829 0.86685 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.09 71.98 0.65 -1.28 16 2 C -0.09 -1.01 3.16 -10.80 -0.03 -1.04 16 3 C -0.14 -0.94 9.19 71.98 0.66 -0.28 16 4 C 0.03 0.37 5.61 71.98 0.40 0.78 16 5 O -0.16 -3.47 10.64 -21.44 -0.23 -3.70 16 6 N -0.61 -12.06 6.39 -184.75 -1.18 -13.24 16 7 C 0.72 18.85 8.71 179.06 1.56 20.41 16 8 O -0.63 -22.81 16.75 13.37 0.22 -22.58 16 9 N -0.72 -15.22 5.55 -482.31 -2.68 -17.89 16 10 C 0.21 4.92 5.80 85.63 0.50 5.41 16 11 C -0.18 -5.00 5.25 -19.84 -0.10 -5.10 16 12 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 13 C -0.24 -9.81 9.17 22.39 0.21 -9.61 16 14 C 0.12 5.75 6.65 22.58 0.15 5.90 16 15 O -0.23 -13.24 9.76 -22.72 -0.22 -13.46 16 16 C -0.41 -23.22 9.49 67.92 0.64 -22.58 16 17 H 0.10 5.27 5.20 -2.91 -0.02 5.25 16 18 C -0.02 -1.20 5.49 84.84 0.47 -0.73 16 19 N -0.92 -55.05 13.67 21.62 0.30 -54.76 16 20 Si 1.02 41.56 29.55 68.60 2.03 43.59 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 C -0.21 -8.03 9.99 22.39 0.22 -7.81 16 25 C -0.04 -1.21 9.69 22.25 0.22 -1.00 16 26 H 0.04 0.73 7.82 -2.39 -0.02 0.71 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.42 4.92 8.56 -92.71 -0.79 4.13 16 36 H 0.41 6.77 8.48 -92.71 -0.79 5.99 16 37 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 38 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 39 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 40 H 0.12 4.94 5.64 -2.91 -0.02 4.93 16 41 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 43 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -76.92 370.11 3.45 -73.47 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.54 Total: 26.61 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 5.76 Total: -18.03 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -3.56 Total: -85.90 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.23 Total: -39.74 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -76.92 3.45 -73.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269641588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.255 kcal (2) G-P(sol) polarization free energy of solvation -76.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds