Wall clock time and date at job start Tue Mar 31 2020 10:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50709 * 109.46791 * 2 1 4 4 O 1.21281 * 119.99566 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99959 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99871 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.47325 * 35.00339 * 6 5 3 8 8 C 1.53003 * 109.47162 * 275.00250 * 6 5 3 9 9 C 1.50701 * 109.46996 * 155.00374 * 6 5 3 10 10 O 1.21278 * 119.99978 * 14.20899 * 9 6 5 11 11 N 1.34772 * 119.99890 * 194.21553 * 9 6 5 12 12 C 1.46504 * 120.00308 * 4.07566 * 11 9 6 13 13 C 1.50702 * 109.47093 * 95.28723 * 12 11 9 14 14 H 1.08001 * 119.99580 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99963 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00130 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00073 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47013 * 90.00367 * 17 15 13 19 19 H 1.48503 * 109.46867 * 210.00035 * 17 15 13 20 20 H 1.48503 * 109.47179 * 329.99930 * 17 15 13 21 21 C 1.46502 * 120.00045 * 184.07981 * 11 9 6 22 22 C 1.50702 * 109.47254 * 85.89177 * 21 11 9 23 23 C 1.34512 * 125.79099 * 89.99904 * 22 21 11 24 24 C 1.41381 * 106.83890 * 180.02562 * 23 22 21 25 25 C 1.34512 * 106.84418 * 359.97438 * 24 23 22 26 26 O 1.34305 * 125.78646 * 269.69356 * 22 21 11 27 27 H 1.08999 * 109.46551 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47145 * 299.99348 * 1 2 3 29 29 H 1.08997 * 109.47090 * 59.99997 * 1 2 3 30 30 H 1.08995 * 109.47145 * 240.00652 * 2 1 3 31 31 H 1.08996 * 109.47571 * 120.00213 * 2 1 3 32 32 H 0.97006 * 120.00047 * 0.02562 * 5 3 2 33 33 H 1.09001 * 109.46988 * 306.94757 * 8 6 5 34 34 H 1.09001 * 109.46964 * 186.94980 * 8 6 5 35 35 H 1.08999 * 109.46994 * 66.95113 * 8 6 5 36 36 H 1.08993 * 109.47356 * 215.29467 * 12 11 9 37 37 H 1.08999 * 109.46838 * 335.29300 * 12 11 9 38 38 H 0.96990 * 120.00102 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.47249 * 205.89063 * 21 11 9 40 40 H 1.08997 * 109.46984 * 325.88698 * 21 11 9 41 41 H 1.08004 * 126.57945 * 0.03502 * 23 22 21 42 42 H 1.08001 * 126.57712 * 179.97438 * 24 23 22 43 43 H 1.08006 * 125.79350 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6673 0.0005 6 6 3.8456 3.0485 0.0011 7 1 3.1729 3.6715 0.5905 8 6 3.8975 3.5717 -1.4358 9 6 5.2269 3.0928 0.6020 10 8 5.8556 2.0667 0.7532 11 7 5.7636 4.2726 0.9714 12 6 4.9713 5.5009 0.8721 13 6 4.3284 5.7929 2.2035 14 1 4.4939 5.1301 3.0399 15 6 3.5291 6.9063 2.3536 16 7 2.9685 7.1615 3.5156 17 14 3.2425 8.0523 0.9065 18 1 2.0473 7.6030 0.1485 19 1 3.0219 9.4336 1.4053 20 1 4.4304 8.0314 0.0157 21 6 7.1393 4.3268 1.4721 22 6 8.0925 4.4431 0.3106 23 6 8.5265 5.5916 -0.2389 24 6 9.3985 5.2370 -1.2937 25 6 9.4457 3.8931 -1.3254 26 8 8.6571 3.4177 -0.3477 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.9878 0.9300 0.0005 33 1 4.4702 2.8802 -2.0538 34 1 4.3749 4.5515 -1.4486 35 1 2.8842 3.6562 -1.8285 36 1 5.6206 6.3304 0.5923 37 1 4.1975 5.3739 0.1151 38 1 2.4065 7.9449 3.6213 39 1 7.2546 5.1922 2.1248 40 1 7.3582 3.4177 2.0321 41 1 8.2600 6.5925 0.0671 42 1 9.9256 5.9152 -1.9485 43 1 10.0234 3.2975 -2.0168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604537849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:44 Heat of formation + Delta-G solvation = -79.318367 kcal Electronic energy + Delta-G solvation = -26267.893889 eV Core-core repulsion = 22507.190323 eV Total energy + Delta-G solvation = -3760.703566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.45597 -41.55252 -40.28627 -37.17040 -36.17601 -34.68936 -33.92164 -33.79072 -32.41054 -31.12070 -29.75946 -27.25555 -26.08570 -24.81228 -23.79214 -22.58911 -21.64951 -21.31028 -20.32178 -19.17727 -18.69168 -18.24082 -17.89444 -17.25164 -16.99996 -16.69275 -16.32633 -16.12772 -15.97674 -15.41322 -15.14920 -14.72861 -14.50857 -14.23690 -14.06333 -13.79625 -13.76609 -13.67067 -13.47984 -13.26389 -13.11096 -13.06116 -12.76233 -12.62796 -12.50776 -12.44378 -12.09752 -12.01706 -11.73064 -11.02973 -10.93102 -10.82195 -10.78069 -10.23444 -9.74394 -9.40946 -8.33475 -6.41501 0.71946 1.37031 1.39597 1.40057 1.46923 1.61452 1.68024 1.95151 2.20984 2.31401 2.45130 3.01103 3.34885 3.77457 3.82751 4.01509 4.09520 4.13934 4.17897 4.23310 4.28842 4.35787 4.48582 4.54295 4.60027 4.68970 4.77434 4.79605 4.93990 4.99606 5.02911 5.04561 5.07617 5.20214 5.25638 5.37630 5.40782 5.47209 5.64585 6.06836 6.25681 6.42941 6.51488 6.63810 6.99262 7.23814 7.24788 8.82713 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.009160 B = 0.006083 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.924709 B = 4601.745444 C = 6836.063690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C 0.503 3.497 4 O -0.584 6.584 5 N -0.708 5.708 6 C 0.124 3.876 7 H 0.090 0.910 8 C -0.148 4.148 9 C 0.518 3.482 10 O -0.568 6.568 11 N -0.583 5.583 12 C 0.212 3.788 13 C -0.545 4.545 14 H 0.034 0.966 15 C 0.022 3.978 16 N -0.939 5.939 17 Si 0.931 3.069 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.229 1.229 21 C 0.196 3.804 22 C -0.045 4.045 23 C -0.201 4.201 24 C -0.223 4.223 25 C -0.042 4.042 26 O -0.189 6.189 27 H 0.091 0.909 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.416 0.584 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.269 0.731 39 H 0.120 0.880 40 H 0.083 0.917 41 H 0.154 0.846 42 H 0.173 0.827 43 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.401 -9.700 -13.320 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C 0.292 3.708 4 O -0.464 6.464 5 N -0.363 5.363 6 C 0.016 3.984 7 H 0.108 0.892 8 C -0.207 4.207 9 C 0.305 3.695 10 O -0.449 6.449 11 N -0.313 5.313 12 C 0.091 3.909 13 C -0.583 4.583 14 H 0.052 0.948 15 C -0.177 4.177 16 N -0.578 5.578 17 Si 0.753 3.247 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.152 1.152 21 C 0.073 3.927 22 C -0.096 4.096 23 C -0.221 4.221 24 C -0.241 4.241 25 C -0.109 4.109 26 O -0.085 6.085 27 H 0.110 0.890 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.143 0.857 31 H 0.131 0.869 32 H 0.254 0.746 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.138 0.862 40 H 0.101 0.899 41 H 0.172 0.828 42 H 0.191 0.809 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 7.017 -9.746 -13.047 17.733 hybrid contribution -0.105 0.872 0.239 0.910 sum 6.912 -8.874 -12.808 17.046 Atomic orbital electron populations 1.21542 0.93145 1.02828 1.01837 1.21700 0.98325 0.90435 1.06784 1.21753 0.81218 0.93601 0.74277 1.90712 1.56154 1.48370 1.51156 1.45847 1.07849 1.07418 1.75151 1.20645 0.92679 0.86034 0.99091 0.89213 1.22073 1.03598 1.02015 0.92972 1.20672 0.88037 0.83255 0.77486 1.90586 1.63647 1.33449 1.57196 1.47894 1.12918 1.08124 1.62352 1.19850 0.91727 0.83083 0.96285 1.21476 1.30267 1.09841 0.96723 0.94799 1.25746 0.94413 0.99076 0.98490 1.70034 1.32941 1.28739 1.26111 0.85958 0.80688 0.78170 0.79869 1.19509 1.20636 1.15160 1.19706 0.77623 1.04961 0.90366 1.22864 1.01060 0.85976 0.99706 1.21930 1.01897 0.98957 0.99354 1.22143 1.04093 0.96005 1.01903 1.24875 0.97390 0.95480 0.93151 1.84088 1.49131 1.36673 1.38641 0.89025 0.94142 0.93156 0.85678 0.86918 0.74598 0.90442 0.90667 0.90957 0.92881 0.93303 0.92226 0.86199 0.89882 0.82793 0.80914 0.74616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.20 71.98 0.66 -2.13 16 2 C -0.13 -2.64 6.42 29.85 0.19 -2.45 16 3 C 0.50 15.79 7.79 87.66 0.68 16.47 16 4 O -0.58 -23.98 15.64 -3.03 -0.05 -24.03 16 5 N -0.71 -22.27 5.02 -446.09 -2.24 -24.51 16 6 C 0.12 4.60 2.12 44.25 0.09 4.70 16 7 H 0.09 4.05 6.71 -2.39 -0.02 4.03 16 8 C -0.15 -4.62 9.05 71.98 0.65 -3.96 16 9 C 0.52 20.50 6.93 87.66 0.61 21.10 16 10 O -0.57 -23.39 15.48 -3.02 -0.05 -23.43 16 11 N -0.58 -23.21 2.45 -830.50 -2.03 -25.25 16 12 C 0.21 9.07 3.63 85.63 0.31 9.38 16 13 C -0.54 -29.21 9.94 25.60 0.25 -28.96 16 14 H 0.03 2.08 8.06 -2.91 -0.02 2.05 16 15 C 0.02 1.23 5.47 84.65 0.46 1.69 16 16 N -0.94 -56.75 13.96 21.45 0.30 -56.45 16 17 Si 0.93 40.65 27.47 68.60 1.88 42.54 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.23 -8.68 6.54 99.48 0.65 -8.03 16 21 C 0.20 7.01 5.95 85.63 0.51 7.52 16 22 C -0.05 -1.46 6.87 24.83 0.17 -1.29 16 23 C -0.20 -5.71 10.81 22.19 0.24 -5.47 16 24 C -0.22 -5.11 10.91 22.19 0.24 -4.86 16 25 C -0.04 -0.94 12.09 66.97 0.81 -0.13 16 26 O -0.19 -5.96 10.65 -2.52 -0.03 -5.99 16 27 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.00 8.10 -2.39 -0.02 0.99 16 29 H 0.05 1.13 8.10 -2.39 -0.02 1.12 16 30 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.42 11.38 7.72 -92.70 -0.72 10.66 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 2.32 6.26 -2.39 -0.01 2.31 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 2.13 7.17 -2.39 -0.02 2.11 16 37 H 0.05 2.04 3.98 -2.39 -0.01 2.03 16 38 H 0.27 15.22 8.31 -92.72 -0.77 14.44 16 39 H 0.12 4.12 8.04 -2.38 -0.02 4.10 16 40 H 0.08 3.05 7.49 -2.39 -0.02 3.03 16 41 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 42 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 43 H 0.24 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -74.18 363.44 3.93 -70.25 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.25 Total: 35.27 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.89 Total: 11.61 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -3.98 Total: -106.21 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -0.12 Total: -53.45 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.88 Total: 42.54 kcal Total: -74.18 3.93 -70.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604537849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.071 kcal (2) G-P(sol) polarization free energy of solvation -74.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds