Wall clock time and date at job start Tue Mar 31 2020 10:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.46006 * 2 1 4 4 C 1.53040 * 109.46476 * 240.02618 * 2 1 3 5 5 C 1.53115 * 109.27716 * 299.16864 * 4 2 1 6 6 C 1.53120 * 109.16144 * 302.34250 * 5 4 2 7 7 H 1.09007 * 109.49956 * 297.71095 * 6 5 4 8 8 C 1.53006 * 109.50609 * 177.63758 * 6 5 4 9 9 F 1.39905 * 109.46843 * 59.99813 * 8 6 5 10 10 F 1.39896 * 109.47081 * 179.97438 * 8 6 5 11 11 F 1.39900 * 109.46960 * 299.99992 * 8 6 5 12 12 C 1.53034 * 109.27844 * 57.65519 * 6 5 4 13 13 N 1.46845 * 109.52093 * 300.82199 * 12 6 5 14 14 C 1.46899 * 111.00038 * 185.84048 * 13 12 6 15 15 C 1.50696 * 109.47565 * 169.42747 * 14 13 12 16 16 O 1.21283 * 119.99648 * 353.83185 * 15 14 13 17 17 N 1.34779 * 120.00105 * 173.82989 * 15 14 13 18 18 C 1.46507 * 119.99678 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.46774 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00204 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00160 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99440 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00372 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47504 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.47121 * 299.99636 * 23 21 19 26 26 H 1.48506 * 109.46994 * 59.99693 * 23 21 19 27 27 H 1.09002 * 109.47017 * 300.02819 * 1 2 3 28 28 H 1.09006 * 109.47171 * 60.02414 * 1 2 3 29 29 H 1.08995 * 109.47348 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.50158 * 59.10602 * 4 2 1 31 31 H 1.08996 * 109.50622 * 179.18272 * 4 2 1 32 32 H 1.09001 * 109.52995 * 62.24464 * 5 4 2 33 33 H 1.09007 * 109.52346 * 182.37306 * 5 4 2 34 34 H 1.09003 * 109.46091 * 180.81048 * 12 6 5 35 35 H 1.08998 * 109.46281 * 60.84291 * 12 6 5 36 36 H 1.09009 * 109.46958 * 49.42534 * 14 13 12 37 37 H 1.09005 * 109.47194 * 289.43229 * 14 13 12 38 38 H 0.96991 * 120.00207 * 359.97438 * 17 15 14 39 39 H 1.08997 * 109.46970 * 60.00157 * 18 17 15 40 40 H 1.08995 * 109.47281 * 299.99812 * 18 17 15 41 41 H 0.97002 * 120.00960 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 1.5442 -2.1695 -1.2356 6 6 2.0267 -2.8532 0.0467 7 1 3.1165 -2.8751 0.0594 8 6 1.4864 -4.2838 0.0973 9 9 1.9498 -4.9968 -1.0137 10 9 1.9282 -4.9079 1.2688 11 9 0.0878 -4.2548 0.0827 12 6 1.5172 -2.0705 1.2590 13 7 2.0192 -0.6918 1.1993 14 6 1.6651 0.0505 2.4165 15 6 2.4076 1.3617 2.4392 16 8 3.2407 1.6015 1.5910 17 7 2.1458 2.2678 3.4020 18 6 2.8673 3.5427 3.4236 19 6 2.3925 4.3687 4.5912 20 1 1.6294 3.9829 5.2509 21 6 2.9315 5.6175 4.8168 22 7 3.8604 6.0876 4.0132 23 14 2.3426 6.6417 6.2636 24 1 3.0739 7.9340 6.2857 25 1 0.8863 6.8989 6.1278 26 1 2.5997 5.9063 7.5279 27 1 -0.3633 0.5143 0.8898 28 1 -0.3634 0.5135 -0.8902 29 1 -0.3634 -1.0276 0.0005 30 1 1.6637 -0.2163 -2.1400 31 1 3.1297 -0.7086 -1.2580 32 1 0.4547 -2.1822 -1.2672 33 1 1.9399 -2.6985 -2.1027 34 1 1.8711 -2.5466 2.1735 35 1 0.4273 -2.0608 1.2532 36 1 1.9385 -0.5371 3.2930 37 1 0.5918 0.2405 2.4269 38 1 1.4793 2.0762 4.0800 39 1 2.6789 4.0826 2.4957 40 1 3.9361 3.3537 3.5235 41 1 4.1661 5.5560 3.2616 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780385708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:39 Heat of formation + Delta-G solvation = -200.740459 kcal Electronic energy + Delta-G solvation = -26479.768237 eV Core-core repulsion = 22171.942674 eV Total energy + Delta-G solvation = -4307.825563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.38369 -47.85880 -47.84903 -40.25739 -38.41214 -34.56926 -34.01320 -32.67181 -32.38444 -28.68589 -27.91378 -26.20869 -25.33985 -23.51022 -22.64320 -22.11403 -19.90169 -19.30924 -18.54913 -18.32813 -17.82497 -17.29706 -16.39985 -16.06466 -15.86057 -14.98616 -14.83522 -14.71114 -14.41152 -14.27247 -14.19549 -14.01783 -13.96412 -13.84373 -13.73673 -13.54376 -13.25745 -12.94780 -12.69554 -12.39612 -12.27760 -12.14589 -11.85812 -11.64930 -11.39671 -11.05167 -10.95324 -10.81733 -10.74378 -10.44947 -10.18318 -9.21729 -8.82062 -8.71109 -8.36189 -8.02255 -6.54356 -4.28298 2.43725 3.23283 3.28715 3.35866 3.37344 3.56411 3.60215 3.75804 3.84643 4.15277 4.42516 4.43973 4.47695 4.70757 4.83056 4.90841 5.14850 5.15983 5.24369 5.24873 5.26912 5.28415 5.36952 5.43211 5.49552 5.55055 5.70849 5.80379 5.91085 6.03755 6.26069 6.79138 6.94344 6.98952 7.18865 7.28384 7.62822 8.23568 8.43399 8.68347 8.95607 9.45537 10.85780 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.032660 B = 0.002729 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.108881 B =10257.109308 C =10520.473485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.072 3.928 3 H 0.107 0.893 4 C -0.103 4.103 5 C -0.121 4.121 6 C -0.128 4.128 7 H 0.125 0.875 8 C 0.456 3.544 9 F -0.183 7.183 10 F -0.183 7.183 11 F -0.184 7.184 12 C 0.054 3.946 13 N -0.506 5.506 14 C 0.033 3.967 15 C 0.500 3.500 16 O -0.538 6.538 17 N -0.710 5.710 18 C 0.242 3.758 19 C -0.624 4.624 20 H 0.057 0.943 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 1.075 2.925 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.286 1.286 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.392 0.608 39 H 0.016 0.984 40 H 0.017 0.983 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 -20.190 -8.570 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.036 4.036 3 H 0.125 0.875 4 C -0.141 4.141 5 C -0.159 4.159 6 C -0.148 4.148 7 H 0.143 0.857 8 C 0.401 3.599 9 F -0.164 7.164 10 F -0.164 7.164 11 F -0.166 7.166 12 C -0.074 4.074 13 N -0.230 5.230 14 C -0.098 4.098 15 C 0.284 3.716 16 O -0.416 6.416 17 N -0.359 5.359 18 C 0.121 3.879 19 C -0.662 4.662 20 H 0.075 0.925 21 C -0.183 4.183 22 N -0.536 5.536 23 Si 0.902 3.098 24 H -0.205 1.205 25 H -0.213 1.213 26 H -0.213 1.213 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.224 0.776 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.850 -18.578 -8.432 21.522 hybrid contribution -1.541 -1.913 -0.288 2.473 sum -8.391 -20.491 -8.720 23.798 Atomic orbital electron populations 1.22558 0.97869 1.01998 1.02697 1.21908 0.92190 1.00253 0.89291 0.87518 1.21509 1.02211 0.93227 0.97159 1.21715 1.01835 0.97251 0.95058 1.22483 1.04595 0.88150 0.99562 0.85733 1.20612 0.75762 0.90149 0.73378 1.93177 1.88567 1.81016 1.53689 1.93187 1.89217 1.84997 1.49046 1.93165 1.30294 1.96928 1.96169 1.22048 0.98545 0.90001 0.96827 1.61693 1.59321 1.00248 1.01711 1.22040 0.98860 0.94850 0.94044 1.20284 0.83851 0.85084 0.82422 1.90643 1.34023 1.78576 1.38341 1.46280 1.41928 1.18719 1.28999 1.19139 0.92012 0.79388 0.97377 1.22064 1.26388 1.04364 1.13428 0.92512 1.25877 0.94410 0.95984 1.02052 1.70761 1.26925 1.40375 1.15528 0.83453 0.75776 0.76131 0.74392 1.20541 1.21297 1.21265 0.92396 0.91656 0.92179 0.90644 0.90290 0.90647 0.90474 0.89475 0.93019 0.88048 0.91856 0.77558 0.96635 0.96540 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 8.19 37.15 0.30 -1.70 16 2 C 0.07 0.89 2.60 -67.72 -0.18 0.71 16 3 H 0.11 1.70 6.05 -51.93 -0.31 1.39 16 4 C -0.10 -1.05 5.61 -26.65 -0.15 -1.20 16 5 C -0.12 -1.03 4.73 -26.61 -0.13 -1.15 16 6 C -0.13 -1.16 2.32 -90.54 -0.21 -1.37 16 7 H 0.12 1.12 8.14 -51.92 -0.42 0.70 16 8 C 0.46 4.24 2.69 37.16 0.10 4.34 16 9 F -0.18 -1.78 16.85 2.25 0.04 -1.74 16 10 F -0.18 -1.84 16.83 2.25 0.04 -1.81 16 11 F -0.18 -1.80 16.23 2.25 0.04 -1.76 16 12 C 0.05 0.54 4.20 -3.84 -0.02 0.52 16 13 N -0.51 -6.44 4.29 -228.12 -0.98 -7.42 16 14 C 0.03 0.44 5.29 -4.98 -0.03 0.41 16 15 C 0.50 9.42 7.36 -10.99 -0.08 9.34 16 16 O -0.54 -12.19 14.70 5.55 0.08 -12.11 16 17 N -0.71 -14.46 5.55 -61.47 -0.34 -14.80 16 18 C 0.24 6.26 4.74 -5.19 -0.02 6.24 16 19 C -0.62 -16.91 9.28 -34.44 -0.32 -17.23 16 20 H 0.06 1.45 7.60 -52.48 -0.40 1.05 16 21 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 22 N -0.90 -27.06 13.65 55.43 0.76 -26.30 16 23 Si 1.08 24.11 29.90 -169.99 -5.08 19.03 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 27 H 0.06 0.64 6.42 -51.93 -0.33 0.31 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.56 4.80 -51.93 -0.25 0.31 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.62 6.16 -51.93 -0.32 0.30 16 33 H 0.08 0.58 7.88 -51.93 -0.41 0.17 16 34 H 0.09 0.82 7.70 -51.93 -0.40 0.42 16 35 H 0.05 0.49 5.83 -51.93 -0.30 0.18 16 36 H 0.10 1.17 7.98 -51.92 -0.41 0.75 16 37 H 0.06 0.73 6.19 -51.93 -0.32 0.41 16 38 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 39 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 40 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16 41 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 LS Contribution 332.53 15.07 5.01 5.01 Total: -1.00 -31.57 332.53 -6.68 -38.25 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.42 Total: 4.20 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.82 Total: -0.56 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.56 Total: -48.52 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.11 Total: -5.31 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.08 Total: 19.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.57 -6.68 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780385708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.491 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds