Wall clock time and date at job start Tue Mar 31 2020 10:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.46006 * 2 1 4 4 C 1.53040 * 109.46476 * 240.02618 * 2 1 3 5 5 C 1.53115 * 109.27716 * 299.16864 * 4 2 1 6 6 C 1.53120 * 109.16144 * 302.34250 * 5 4 2 7 7 H 1.09007 * 109.49956 * 297.71095 * 6 5 4 8 8 C 1.53006 * 109.50609 * 177.63758 * 6 5 4 9 9 F 1.39905 * 109.46843 * 59.99813 * 8 6 5 10 10 F 1.39896 * 109.47081 * 179.97438 * 8 6 5 11 11 F 1.39900 * 109.46960 * 299.99992 * 8 6 5 12 12 C 1.53034 * 109.27844 * 57.65519 * 6 5 4 13 13 N 1.46845 * 109.52093 * 300.82199 * 12 6 5 14 14 C 1.46899 * 111.00038 * 185.84048 * 13 12 6 15 15 C 1.50696 * 109.47565 * 169.42747 * 14 13 12 16 16 O 1.21283 * 119.99648 * 353.83185 * 15 14 13 17 17 N 1.34779 * 120.00105 * 173.82989 * 15 14 13 18 18 C 1.46507 * 119.99678 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.46774 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00204 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00160 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99440 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00372 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47504 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.47121 * 299.99636 * 23 21 19 26 26 H 1.48506 * 109.46994 * 59.99693 * 23 21 19 27 27 H 1.09002 * 109.47017 * 300.02819 * 1 2 3 28 28 H 1.09006 * 109.47171 * 60.02414 * 1 2 3 29 29 H 1.08995 * 109.47348 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.50158 * 59.10602 * 4 2 1 31 31 H 1.08996 * 109.50622 * 179.18272 * 4 2 1 32 32 H 1.09001 * 109.52995 * 62.24464 * 5 4 2 33 33 H 1.09007 * 109.52346 * 182.37306 * 5 4 2 34 34 H 1.09003 * 109.46091 * 180.81048 * 12 6 5 35 35 H 1.08998 * 109.46281 * 60.84291 * 12 6 5 36 36 H 1.09009 * 109.46958 * 49.42534 * 14 13 12 37 37 H 1.09005 * 109.47194 * 289.43229 * 14 13 12 38 38 H 0.96991 * 120.00207 * 359.97438 * 17 15 14 39 39 H 1.08997 * 109.46970 * 60.00157 * 18 17 15 40 40 H 1.08995 * 109.47281 * 299.99812 * 18 17 15 41 41 H 0.97002 * 120.00960 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 1.5442 -2.1695 -1.2356 6 6 2.0267 -2.8532 0.0467 7 1 3.1165 -2.8751 0.0594 8 6 1.4864 -4.2838 0.0973 9 9 1.9498 -4.9968 -1.0137 10 9 1.9282 -4.9079 1.2688 11 9 0.0878 -4.2548 0.0827 12 6 1.5172 -2.0705 1.2590 13 7 2.0192 -0.6918 1.1993 14 6 1.6651 0.0505 2.4165 15 6 2.4076 1.3617 2.4392 16 8 3.2407 1.6015 1.5910 17 7 2.1458 2.2678 3.4020 18 6 2.8673 3.5427 3.4236 19 6 2.3925 4.3687 4.5912 20 1 1.6294 3.9829 5.2509 21 6 2.9315 5.6175 4.8168 22 7 3.8604 6.0876 4.0132 23 14 2.3426 6.6417 6.2636 24 1 3.0739 7.9340 6.2857 25 1 0.8863 6.8989 6.1278 26 1 2.5997 5.9063 7.5279 27 1 -0.3633 0.5143 0.8898 28 1 -0.3634 0.5135 -0.8902 29 1 -0.3634 -1.0276 0.0005 30 1 1.6637 -0.2163 -2.1400 31 1 3.1297 -0.7086 -1.2580 32 1 0.4547 -2.1822 -1.2672 33 1 1.9399 -2.6985 -2.1027 34 1 1.8711 -2.5466 2.1735 35 1 0.4273 -2.0608 1.2532 36 1 1.9385 -0.5371 3.2930 37 1 0.5918 0.2405 2.4269 38 1 1.4793 2.0762 4.0800 39 1 2.6789 4.0826 2.4957 40 1 3.9361 3.3537 3.5235 41 1 4.1661 5.5560 3.2616 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780385708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:38 Heat of formation + Delta-G solvation = -222.947093 kcal Electronic energy + Delta-G solvation = -26480.731189 eV Core-core repulsion = 22171.942674 eV Total energy + Delta-G solvation = -4308.788515 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.12504 -48.60449 -48.59088 -41.35398 -39.82007 -36.41881 -35.03990 -34.43252 -33.44848 -29.99596 -28.96232 -27.75870 -26.21089 -24.95525 -24.00404 -23.09313 -21.43139 -20.22362 -19.41531 -19.29420 -19.02610 -18.48350 -17.81567 -17.15394 -16.95828 -16.50557 -15.82614 -15.66416 -15.60992 -15.54058 -15.10800 -15.02415 -14.93184 -14.76177 -14.72898 -14.59072 -14.35853 -14.31007 -13.98769 -13.88424 -13.69231 -13.10045 -13.00464 -12.89998 -12.65370 -12.52590 -12.23919 -11.91890 -11.74821 -11.56860 -11.38227 -10.98398 -10.75288 -10.70527 -9.93237 -9.31304 -8.79452 -6.55170 1.55936 1.64178 1.66877 1.72292 1.83380 2.21374 2.55555 2.73722 2.90796 3.03550 3.08230 3.12732 3.66605 3.72741 3.85044 3.90417 4.02946 4.10710 4.23055 4.30631 4.41354 4.48687 4.52080 4.53774 4.63948 4.79076 4.79907 4.95023 4.96847 5.01263 5.07155 5.14276 5.40946 5.47335 5.54688 5.86262 6.03499 6.09080 6.31958 6.83961 7.25498 7.44732 8.59892 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.032660 B = 0.002729 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.108881 B =10257.109308 C =10520.473485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.069 3.931 3 H 0.062 0.938 4 C -0.099 4.099 5 C -0.114 4.114 6 C -0.125 4.125 7 H 0.123 0.877 8 C 0.462 3.538 9 F -0.185 7.185 10 F -0.187 7.187 11 F -0.184 7.184 12 C 0.056 3.944 13 N -0.525 5.525 14 C 0.046 3.954 15 C 0.496 3.504 16 O -0.581 6.581 17 N -0.707 5.707 18 C 0.257 3.743 19 C -0.630 4.630 20 H 0.076 0.924 21 C -0.033 4.033 22 N -0.931 5.931 23 Si 1.129 2.871 24 H -0.287 1.287 25 H -0.263 1.263 26 H -0.264 1.264 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.129 0.871 37 H 0.089 0.911 38 H 0.408 0.592 39 H -0.018 1.018 40 H -0.019 1.019 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.407 -21.931 -7.577 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.039 4.039 3 H 0.080 0.920 4 C -0.137 4.137 5 C -0.152 4.152 6 C -0.145 4.145 7 H 0.141 0.859 8 C 0.408 3.592 9 F -0.166 7.166 10 F -0.169 7.169 11 F -0.166 7.166 12 C -0.072 4.072 13 N -0.249 5.249 14 C -0.084 4.084 15 C 0.283 3.717 16 O -0.461 6.461 17 N -0.358 5.358 18 C 0.133 3.867 19 C -0.667 4.667 20 H 0.094 0.906 21 C -0.231 4.231 22 N -0.567 5.567 23 Si 0.948 3.052 24 H -0.213 1.213 25 H -0.188 1.188 26 H -0.188 1.188 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.107 0.893 38 H 0.244 0.756 39 H 0.000 1.000 40 H -0.001 1.001 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.102 -20.384 -7.442 23.532 hybrid contribution -0.813 -1.426 -0.674 1.774 sum -9.915 -21.810 -8.115 25.295 Atomic orbital electron populations 1.22484 0.96064 1.03065 1.02750 1.21808 0.93583 0.98220 0.90259 0.91960 1.21456 1.01193 0.94488 0.96590 1.21679 1.02338 0.95803 0.95341 1.22442 1.04577 0.87966 0.99495 0.85868 1.20524 0.75632 0.89955 0.73134 1.93177 1.88603 1.81071 1.53788 1.93182 1.89273 1.85095 1.49305 1.93166 1.30335 1.96921 1.96156 1.22100 0.99260 0.88142 0.97690 1.61612 1.60443 1.01509 1.01358 1.21963 0.99158 0.91704 0.95589 1.21336 0.83219 0.86389 0.80725 1.90629 1.36039 1.79682 1.39741 1.46050 1.42113 1.17332 1.30345 1.18606 0.90673 0.81676 0.95738 1.22447 1.26313 1.04485 1.13491 0.90562 1.27635 0.93635 0.97882 1.03998 1.70906 1.28986 1.40615 1.16144 0.82802 0.76402 0.74293 0.71697 1.21283 1.18794 1.18830 0.93009 0.91031 0.90427 0.89520 0.91966 0.89702 0.89172 0.88559 0.91763 0.85366 0.89289 0.75597 1.00029 1.00106 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.50 8.19 71.98 0.59 -2.91 16 2 C 0.07 1.68 2.60 44.94 0.12 1.80 16 3 H 0.06 2.08 6.05 -2.39 -0.01 2.07 16 4 C -0.10 -1.93 5.61 30.65 0.17 -1.76 16 5 C -0.11 -1.68 4.73 30.67 0.15 -1.53 16 6 C -0.12 -1.97 2.32 -10.74 -0.02 -2.00 16 7 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 8 C 0.46 7.44 2.69 71.98 0.19 7.63 16 9 F -0.18 -3.18 16.85 44.97 0.76 -2.43 16 10 F -0.19 -3.34 16.83 44.97 0.76 -2.58 16 11 F -0.18 -3.05 16.23 44.97 0.73 -2.32 16 12 C 0.06 0.96 4.20 86.33 0.36 1.32 16 13 N -0.53 -12.65 4.29 -875.65 -3.76 -16.41 16 14 C 0.05 1.15 5.29 85.56 0.45 1.61 16 15 C 0.50 18.92 7.36 87.66 0.65 19.56 16 16 O -0.58 -27.57 14.70 -3.04 -0.04 -27.61 16 17 N -0.71 -29.05 5.55 -466.78 -2.59 -31.64 16 18 C 0.26 13.82 4.74 85.63 0.41 14.23 16 19 C -0.63 -34.27 9.28 25.60 0.24 -34.03 16 20 H 0.08 3.78 7.60 -2.91 -0.02 3.76 16 21 C -0.03 -1.85 5.46 84.65 0.46 -1.39 16 22 N -0.93 -57.65 13.65 21.45 0.29 -57.36 16 23 Si 1.13 47.53 29.90 68.60 2.05 49.58 16 24 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 26 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 27 H 0.05 1.03 6.42 -2.39 -0.02 1.02 16 28 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.08 1.20 4.80 -2.39 -0.01 1.18 16 30 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.12 6.16 -2.39 -0.01 1.11 16 33 H 0.09 1.13 7.88 -2.38 -0.02 1.11 16 34 H 0.10 1.51 7.70 -2.39 -0.02 1.49 16 35 H 0.06 0.97 5.83 -2.39 -0.01 0.96 16 36 H 0.13 2.55 7.98 -2.38 -0.02 2.53 16 37 H 0.09 1.81 6.19 -2.38 -0.01 1.79 16 38 H 0.41 13.84 8.32 -92.71 -0.77 13.07 16 39 H -0.02 -1.09 8.01 -2.39 -0.02 -1.10 16 40 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 41 H 0.25 16.31 7.22 -92.71 -0.67 15.64 16 Total: -1.00 -71.42 332.53 2.35 -69.07 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.40 Total: 19.16 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 3.76 Total: 2.53 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -6.06 Total: -105.41 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.04 Total: -27.61 kcal Atomic # 9 Polarization: -9.57 SS G_CDS: 2.24 Total: -7.32 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.05 Total: 49.58 kcal Total: -71.42 2.35 -69.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780385708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.878 kcal (2) G-P(sol) polarization free energy of solvation -71.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds