Wall clock time and date at job start Tue Mar 31 2020 09:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46765 * 2 1 4 4 N 1.46499 * 109.47069 * 119.99456 * 2 1 3 5 5 C 1.38225 * 119.99825 * 85.00013 * 4 2 1 6 6 N 1.32434 * 119.83246 * 354.55226 * 5 4 2 7 7 C 1.31839 * 121.78084 * 179.97438 * 6 5 4 8 8 C 1.38400 * 121.23247 * 359.97405 * 7 6 5 9 9 C 1.38303 * 119.51662 * 0.30178 * 8 7 6 10 10 C 1.40047 * 118.35985 * 359.43559 * 9 8 7 11 11 C 1.47288 * 120.61588 * 180.30959 * 10 9 8 12 12 O 1.21525 * 120.00250 * 185.62875 * 11 10 9 13 13 O 1.34769 * 119.99844 * 5.62574 * 11 10 9 14 14 C 1.45198 * 116.99800 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46988 * 180.02562 * 14 13 11 16 16 O 1.42907 * 109.47336 * 64.99787 * 15 14 13 17 17 C 1.42897 * 114.00151 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47114 * 179.97438 * 17 16 15 19 19 H 1.07992 * 119.99891 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99987 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99676 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99799 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47384 * 60.00277 * 22 20 18 24 24 H 1.48506 * 109.46796 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47176 * 300.00241 * 22 20 18 26 26 H 1.09006 * 109.46903 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47715 * 300.00191 * 1 2 3 28 28 H 1.09005 * 109.47134 * 60.00663 * 1 2 3 29 29 H 1.09001 * 109.47381 * 240.00117 * 2 1 3 30 30 H 1.09001 * 109.47211 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46753 * 299.99571 * 3 2 1 32 32 H 1.09002 * 109.47559 * 59.99332 * 3 2 1 33 33 H 0.97005 * 119.99990 * 265.00664 * 4 2 1 34 34 H 1.07998 * 119.38443 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.24175 * 180.02562 * 8 7 6 36 36 H 1.08000 * 120.82305 * 179.70413 * 9 8 7 37 37 H 1.09002 * 109.47082 * 299.99273 * 14 13 11 38 38 H 1.08993 * 109.47657 * 60.00219 * 14 13 11 39 39 H 1.08997 * 109.47326 * 184.99408 * 15 14 13 40 40 H 1.09001 * 109.47402 * 305.00043 * 15 14 13 41 41 H 1.09004 * 109.46835 * 299.99835 * 17 16 15 42 42 H 1.09001 * 109.47461 * 59.99491 * 17 16 15 43 43 H 0.97007 * 119.99430 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1503 -2.0664 1.1945 6 7 1.7337 -2.7669 0.1506 7 6 1.8412 -4.0802 0.1081 8 6 2.3981 -4.7890 1.1583 9 6 2.8453 -4.1103 2.2772 10 6 2.7272 -2.7150 2.3003 11 6 3.1936 -1.9418 3.4639 12 8 2.9938 -0.7443 3.5175 13 8 3.8420 -2.5625 4.4693 14 6 4.2723 -1.7380 5.5843 15 6 4.9851 -2.6111 6.6189 16 8 6.1867 -3.1372 6.0518 17 6 6.9320 -3.9719 6.9404 18 6 8.1714 -4.4688 6.2419 19 1 8.3703 -4.1760 5.2216 20 6 9.0521 -5.2963 6.9059 21 7 8.8101 -5.6523 8.1486 22 14 10.5888 -5.9116 6.0402 23 1 11.4237 -4.7537 5.6311 24 1 11.3632 -6.7791 6.9638 25 1 10.2007 -6.6915 4.8376 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9565 0.8899 33 1 2.2489 -0.1821 1.9895 34 1 1.4882 -4.6129 -0.7626 35 1 2.4787 -5.8648 1.1063 36 1 3.2789 -4.6427 3.1109 37 1 4.9566 -0.9694 5.2250 38 1 3.4040 -1.2656 6.0434 39 1 5.2295 -2.0103 7.4949 40 1 4.3320 -3.4329 6.9127 41 1 7.2168 -3.3996 7.8233 42 1 6.3190 -4.8218 7.2405 43 1 9.4295 -6.2348 8.6155 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815216492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:18 Heat of formation + Delta-G solvation = -97.662072 kcal Electronic energy + Delta-G solvation = -24841.194283 eV Core-core repulsion = 21079.695275 eV Total energy + Delta-G solvation = -3761.499009 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98212 -39.59490 -37.32967 -36.94522 -35.99696 -32.88301 -32.68324 -32.64078 -30.19258 -29.01747 -27.43724 -26.95926 -24.99240 -23.40747 -22.48214 -22.16190 -21.48153 -20.70373 -17.99827 -17.93359 -17.08339 -16.59213 -16.45925 -16.36057 -15.39816 -15.14633 -14.96752 -14.70015 -14.59025 -14.42523 -14.12560 -13.83217 -13.31204 -13.15881 -12.91423 -12.81418 -12.56344 -12.47770 -12.18470 -11.94855 -11.71343 -11.45825 -11.23243 -10.96926 -10.85758 -10.78531 -10.52021 -10.45374 -10.42328 -10.07944 -9.96238 -9.62881 -9.16094 -8.89465 -8.23376 -7.93193 -6.13454 -4.15255 0.56575 1.35054 2.51969 2.71121 3.09793 3.31249 3.33819 3.37880 3.77172 4.27485 4.30896 4.63243 4.66827 4.74174 4.76654 4.85613 4.91971 5.05296 5.14245 5.19028 5.23092 5.33573 5.37666 5.43173 5.52314 5.55915 5.69594 5.81983 5.83981 5.88475 5.91284 6.02353 6.04598 6.08257 6.35177 6.46871 7.02930 7.04256 7.28968 7.37516 7.75771 7.77828 8.07334 8.10639 8.50121 8.96992 9.49533 10.98009 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017992 B = 0.002756 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.865624 B =10155.563302 C =10772.568477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 C -0.162 4.162 4 N -0.699 5.699 5 C 0.459 3.541 6 N -0.551 5.551 7 C 0.186 3.814 8 C -0.254 4.254 9 C 0.033 3.967 10 C -0.259 4.259 11 C 0.526 3.474 12 O -0.531 6.531 13 O -0.332 6.332 14 C 0.075 3.925 15 C 0.061 3.939 16 O -0.391 6.391 17 C 0.195 3.805 18 C -0.516 4.516 19 H 0.066 0.934 20 C 0.057 3.943 21 N -0.899 5.899 22 Si 0.909 3.091 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.424 0.576 34 H 0.160 0.840 35 H 0.140 0.860 36 H 0.151 0.849 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.006 0.994 42 H 0.007 0.993 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.872 7.879 -14.872 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 C -0.220 4.220 4 N -0.341 5.341 5 C 0.220 3.780 6 N -0.269 5.269 7 C 0.026 3.974 8 C -0.277 4.277 9 C 0.008 3.992 10 C -0.268 4.268 11 C 0.374 3.626 12 O -0.424 6.424 13 O -0.247 6.247 14 C 0.002 3.998 15 C -0.016 4.016 16 O -0.311 6.311 17 C 0.121 3.879 18 C -0.554 4.554 19 H 0.084 0.916 20 C -0.145 4.145 21 N -0.538 5.538 22 Si 0.736 3.264 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.274 0.726 34 H 0.178 0.822 35 H 0.158 0.842 36 H 0.169 0.831 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.025 0.975 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.165 8.784 -15.625 25.520 hybrid contribution 1.203 -0.654 1.088 1.749 sum -16.962 8.130 -14.537 23.772 Atomic orbital electron populations 1.22184 0.95537 1.02594 1.01635 1.20944 0.94091 0.92610 0.88774 1.22081 1.01900 0.95255 1.02731 1.45742 1.67764 1.02417 1.18151 1.18262 0.86265 0.85999 0.87487 1.67426 1.24774 1.08987 1.25719 1.22736 0.89321 0.88576 0.96776 1.21824 1.08094 1.01886 0.95878 1.21812 0.88275 0.91841 0.97296 1.19328 1.16517 0.94806 0.96126 1.20774 0.74161 0.85463 0.82191 1.90439 1.56591 1.16302 1.79039 1.86652 1.66834 1.41974 1.29246 1.23255 0.98345 0.93405 0.84823 1.22327 0.88897 0.96863 0.93556 1.87924 1.33603 1.67676 1.41856 1.20233 0.90385 0.88156 0.89153 1.21006 1.05062 1.29172 1.00164 0.91566 1.24947 0.98567 0.95974 0.94975 1.69953 1.37499 1.35807 1.10526 0.86384 0.82056 0.78764 0.79213 1.20012 1.21131 1.19948 0.91875 0.92839 0.91940 0.89500 0.91969 0.90966 0.92075 0.72636 0.82237 0.84240 0.83131 0.90359 0.90296 0.91848 0.93148 0.97621 0.97484 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.50 37.16 0.35 -1.04 16 2 C 0.14 1.37 3.15 -67.93 -0.21 1.15 16 3 C -0.16 -1.29 9.38 37.16 0.35 -0.94 16 4 N -0.70 -8.58 5.09 -53.73 -0.27 -8.85 16 5 C 0.46 6.08 7.46 -155.20 -1.16 4.93 16 6 N -0.55 -6.53 9.15 -12.19 -0.11 -6.65 16 7 C 0.19 1.78 11.16 -17.49 -0.20 1.58 16 8 C -0.25 -2.49 10.08 -39.50 -0.40 -2.89 16 9 C 0.03 0.41 9.73 -38.88 -0.38 0.03 16 10 C -0.26 -3.63 5.91 -104.66 -0.62 -4.24 16 11 C 0.53 8.23 7.88 34.41 0.27 8.50 16 12 O -0.53 -8.50 13.46 -19.28 -0.26 -8.76 16 13 O -0.33 -5.57 9.53 -43.46 -0.41 -5.98 16 14 C 0.08 1.18 5.85 37.16 0.22 1.40 16 15 C 0.06 1.10 6.33 37.16 0.24 1.34 16 16 O -0.39 -9.39 10.30 -38.80 -0.40 -9.79 16 17 C 0.19 5.29 5.69 36.01 0.20 5.50 16 18 C -0.52 -15.17 9.43 -34.44 -0.32 -15.49 16 19 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 22 Si 0.91 21.79 29.54 -169.99 -5.02 16.77 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 26 H 0.06 0.62 8.05 -51.93 -0.42 0.21 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.89 7.63 -51.93 -0.40 0.49 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.42 5.60 5.11 -40.92 -0.21 5.39 16 34 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.15 1.81 7.71 -52.49 -0.40 1.41 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 42 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -32.87 368.96 -8.40 -41.27 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.47 Total: 1.04 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.75 Total: 1.36 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.35 Total: -41.46 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -1.07 Total: -24.53 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.87 -8.40 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815216492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.388 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds