Wall clock time and date at job start Tue Mar 31 2020 09:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46765 * 2 1 4 4 N 1.46499 * 109.47069 * 119.99456 * 2 1 3 5 5 C 1.38225 * 119.99825 * 85.00013 * 4 2 1 6 6 N 1.32434 * 119.83246 * 354.55226 * 5 4 2 7 7 C 1.31839 * 121.78084 * 179.97438 * 6 5 4 8 8 C 1.38400 * 121.23247 * 359.97405 * 7 6 5 9 9 C 1.38303 * 119.51662 * 0.30178 * 8 7 6 10 10 C 1.40047 * 118.35985 * 359.43559 * 9 8 7 11 11 C 1.47288 * 120.61588 * 180.30959 * 10 9 8 12 12 O 1.21525 * 120.00250 * 185.62875 * 11 10 9 13 13 O 1.34769 * 119.99844 * 5.62574 * 11 10 9 14 14 C 1.45198 * 116.99800 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46988 * 180.02562 * 14 13 11 16 16 O 1.42907 * 109.47336 * 64.99787 * 15 14 13 17 17 C 1.42897 * 114.00151 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47114 * 179.97438 * 17 16 15 19 19 H 1.07992 * 119.99891 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99987 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99676 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99799 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47384 * 60.00277 * 22 20 18 24 24 H 1.48506 * 109.46796 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47176 * 300.00241 * 22 20 18 26 26 H 1.09006 * 109.46903 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47715 * 300.00191 * 1 2 3 28 28 H 1.09005 * 109.47134 * 60.00663 * 1 2 3 29 29 H 1.09001 * 109.47381 * 240.00117 * 2 1 3 30 30 H 1.09001 * 109.47211 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46753 * 299.99571 * 3 2 1 32 32 H 1.09002 * 109.47559 * 59.99332 * 3 2 1 33 33 H 0.97005 * 119.99990 * 265.00664 * 4 2 1 34 34 H 1.07998 * 119.38443 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.24175 * 180.02562 * 8 7 6 36 36 H 1.08000 * 120.82305 * 179.70413 * 9 8 7 37 37 H 1.09002 * 109.47082 * 299.99273 * 14 13 11 38 38 H 1.08993 * 109.47657 * 60.00219 * 14 13 11 39 39 H 1.08997 * 109.47326 * 184.99408 * 15 14 13 40 40 H 1.09001 * 109.47402 * 305.00043 * 15 14 13 41 41 H 1.09004 * 109.46835 * 299.99835 * 17 16 15 42 42 H 1.09001 * 109.47461 * 59.99491 * 17 16 15 43 43 H 0.97007 * 119.99430 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1503 -2.0664 1.1945 6 7 1.7337 -2.7669 0.1506 7 6 1.8412 -4.0802 0.1081 8 6 2.3981 -4.7890 1.1583 9 6 2.8453 -4.1103 2.2772 10 6 2.7272 -2.7150 2.3003 11 6 3.1936 -1.9418 3.4639 12 8 2.9938 -0.7443 3.5175 13 8 3.8420 -2.5625 4.4693 14 6 4.2723 -1.7380 5.5843 15 6 4.9851 -2.6111 6.6189 16 8 6.1867 -3.1372 6.0518 17 6 6.9320 -3.9719 6.9404 18 6 8.1714 -4.4688 6.2419 19 1 8.3703 -4.1760 5.2216 20 6 9.0521 -5.2963 6.9059 21 7 8.8101 -5.6523 8.1486 22 14 10.5888 -5.9116 6.0402 23 1 11.4237 -4.7537 5.6311 24 1 11.3632 -6.7791 6.9638 25 1 10.2007 -6.6915 4.8376 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9565 0.8899 33 1 2.2489 -0.1821 1.9895 34 1 1.4882 -4.6129 -0.7626 35 1 2.4787 -5.8648 1.1063 36 1 3.2789 -4.6427 3.1109 37 1 4.9566 -0.9694 5.2250 38 1 3.4040 -1.2656 6.0434 39 1 5.2295 -2.0103 7.4949 40 1 4.3320 -3.4329 6.9127 41 1 7.2168 -3.3996 7.8233 42 1 6.3190 -4.8218 7.2405 43 1 9.4295 -6.2348 8.6155 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815216492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:18 Heat of formation + Delta-G solvation = -117.324101 kcal Electronic energy + Delta-G solvation = -24842.046893 eV Core-core repulsion = 21079.695275 eV Total energy + Delta-G solvation = -3762.351618 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02214 -40.66349 -38.76408 -38.07032 -37.31084 -34.95819 -33.71851 -33.45844 -31.66661 -29.96500 -29.00643 -28.10231 -26.00478 -24.60932 -24.32181 -23.46141 -22.56441 -21.58762 -19.09345 -18.84185 -18.70579 -18.07981 -17.94286 -17.45467 -17.03340 -16.43815 -16.29678 -15.94110 -15.75303 -15.52766 -15.33483 -14.94218 -14.63061 -14.25287 -14.02315 -13.89947 -13.71575 -13.50152 -13.23731 -13.11125 -12.94531 -12.92221 -12.70064 -12.46555 -12.43409 -12.04886 -11.95949 -11.79316 -11.61622 -11.30716 -11.26001 -10.91026 -10.90135 -10.52799 -10.28225 -8.82077 -8.32966 -6.45175 -0.38482 0.46432 1.39930 1.41254 1.44304 1.52809 1.56960 2.21617 2.33849 2.86945 3.00926 3.04445 3.42480 3.69271 3.80653 3.89801 3.96262 4.07467 4.10284 4.15715 4.26026 4.35498 4.39594 4.47909 4.56479 4.68786 4.71917 4.80996 4.84402 4.90260 4.97830 5.03226 5.15618 5.18211 5.21867 5.30442 5.34624 5.53229 5.57439 5.94227 6.18153 6.32480 6.48691 6.62474 6.78360 7.14079 7.26315 8.78937 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017992 B = 0.002756 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.865624 B =10155.563302 C =10772.568477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 C -0.157 4.157 4 N -0.704 5.704 5 C 0.448 3.552 6 N -0.558 5.558 7 C 0.193 3.807 8 C -0.245 4.245 9 C 0.020 3.980 10 C -0.287 4.287 11 C 0.522 3.478 12 O -0.543 6.543 13 O -0.349 6.349 14 C 0.079 3.921 15 C 0.054 3.946 16 O -0.409 6.409 17 C 0.209 3.791 18 C -0.551 4.551 19 H 0.059 0.941 20 C 0.008 3.992 21 N -0.928 5.928 22 Si 0.981 3.019 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.265 1.265 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.417 0.583 34 H 0.202 0.798 35 H 0.169 0.831 36 H 0.145 0.855 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.057 0.943 41 H -0.008 1.008 42 H -0.009 1.009 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.206 7.410 -16.725 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.033 3.967 3 C -0.215 4.215 4 N -0.344 5.344 5 C 0.209 3.791 6 N -0.277 5.277 7 C 0.033 3.967 8 C -0.268 4.268 9 C -0.006 4.006 10 C -0.296 4.296 11 C 0.371 3.629 12 O -0.436 6.436 13 O -0.265 6.265 14 C 0.006 3.994 15 C -0.023 4.023 16 O -0.329 6.329 17 C 0.134 3.866 18 C -0.589 4.589 19 H 0.077 0.923 20 C -0.190 4.190 21 N -0.567 5.567 22 Si 0.804 3.196 23 H -0.192 1.192 24 H -0.198 1.198 25 H -0.190 1.190 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.266 0.734 34 H 0.219 0.781 35 H 0.187 0.813 36 H 0.163 0.837 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.010 0.990 42 H 0.008 0.992 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.527 8.336 -17.486 26.805 hybrid contribution 1.193 -0.511 1.623 2.078 sum -17.333 7.825 -15.864 24.765 Atomic orbital electron populations 1.22114 0.94590 1.01955 1.02525 1.21115 0.94805 0.93201 0.87602 1.22063 1.01271 0.94337 1.03805 1.45895 1.67567 1.02353 1.18618 1.18439 0.86478 0.86522 0.87700 1.67542 1.24941 1.10097 1.25080 1.23479 0.87607 0.87904 0.97740 1.22161 1.06608 1.03287 0.94714 1.21918 0.88948 0.91392 0.98294 1.19398 1.18493 0.95588 0.96114 1.21120 0.73863 0.85606 0.82282 1.90422 1.57179 1.16666 1.79313 1.86637 1.67331 1.42643 1.29856 1.23240 0.99210 0.92508 0.84462 1.22650 0.86956 0.97635 0.95052 1.87869 1.35663 1.67371 1.42045 1.19864 0.90110 0.87766 0.88883 1.21345 1.06655 1.30582 1.00297 0.92280 1.25927 1.01878 0.95558 0.95672 1.70053 1.38828 1.35988 1.11873 0.85266 0.77569 0.78467 0.78322 1.19187 1.19827 1.18977 0.93219 0.93148 0.89789 0.89955 0.92906 0.88694 0.92149 0.73432 0.78116 0.81323 0.83731 0.90928 0.87142 0.89855 0.92433 0.99032 0.99170 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.50 71.98 0.68 -1.79 16 2 C 0.14 2.56 3.15 44.99 0.14 2.70 16 3 C -0.16 -2.35 9.38 71.98 0.68 -1.68 16 4 N -0.70 -17.38 5.09 -323.92 -1.65 -19.03 16 5 C 0.45 11.83 7.46 133.67 1.00 12.82 16 6 N -0.56 -12.51 9.15 -192.48 -1.76 -14.27 16 7 C 0.19 3.20 11.16 84.73 0.95 4.15 16 8 C -0.25 -4.33 10.08 22.32 0.23 -4.11 16 9 C 0.02 0.49 9.73 22.72 0.22 0.71 16 10 C -0.29 -8.17 5.91 -19.89 -0.12 -8.29 16 11 C 0.52 16.80 7.88 70.20 0.55 17.35 16 12 O -0.54 -17.78 13.46 19.76 0.27 -17.52 16 13 O -0.35 -12.00 9.53 -54.13 -0.52 -12.51 16 14 C 0.08 2.49 5.85 71.98 0.42 2.91 16 15 C 0.05 1.95 6.33 71.98 0.46 2.41 16 16 O -0.41 -20.17 10.30 -145.57 -1.50 -21.67 16 17 C 0.21 11.68 5.69 71.24 0.41 12.08 16 18 C -0.55 -33.00 9.43 25.60 0.24 -32.76 16 19 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 20 C 0.01 0.49 5.46 84.66 0.46 0.95 16 21 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 22 Si 0.98 44.32 29.54 68.60 2.03 46.35 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 26 H 0.05 0.93 8.05 -2.38 -0.02 0.92 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 28 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.08 1.61 7.63 -2.39 -0.02 1.59 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.42 11.30 5.11 -94.29 -0.48 10.81 16 34 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.14 3.59 7.71 -2.91 -0.02 3.57 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 38 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 42 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 43 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -71.87 368.96 3.99 -67.88 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.53 Total: 18.47 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 6.31 Total: 7.46 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -3.12 Total: -88.45 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -1.75 Total: -51.70 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -71.87 3.99 -67.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815216492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.448 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds