Wall clock time and date at job start Tue Mar 31 2020 09:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47230 * 2 1 4 4 H 1.08996 * 109.47060 * 304.99610 * 3 2 1 5 5 C 1.50703 * 109.47017 * 185.00234 * 3 2 1 6 6 H 1.07998 * 120.00067 * 239.99630 * 5 3 2 7 7 C 1.37882 * 120.00157 * 59.99966 * 5 3 2 8 8 N 1.31512 * 119.99786 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00066 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47423 * 89.99538 * 9 7 5 11 11 H 1.48500 * 109.47147 * 209.99847 * 9 7 5 12 12 H 1.48502 * 109.46975 * 329.99620 * 9 7 5 13 13 N 1.46493 * 109.47481 * 65.00078 * 3 2 1 14 14 C 1.34771 * 120.00264 * 275.00423 * 13 3 2 15 15 O 1.21593 * 119.99631 * 359.97438 * 14 13 3 16 16 N 1.34781 * 120.00442 * 180.02562 * 14 13 3 17 17 C 1.46493 * 119.99794 * 185.03645 * 16 14 13 18 18 C 1.52999 * 109.47470 * 296.03019 * 17 16 14 19 19 C 1.52999 * 109.47292 * 56.03476 * 17 16 14 20 20 C 1.53006 * 117.49763 * 184.99594 * 19 17 16 21 21 C 1.53008 * 117.49933 * 116.37259 * 19 17 16 22 22 C 1.53002 * 109.46873 * 176.03124 * 17 16 14 23 23 F 1.39903 * 109.47215 * 302.00420 * 22 17 16 24 24 F 1.39901 * 109.47237 * 62.00394 * 22 17 16 25 25 F 1.39897 * 109.47403 * 182.00248 * 22 17 16 26 26 H 1.08996 * 109.47482 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46833 * 300.00403 * 1 2 3 28 28 H 1.08999 * 109.46880 * 59.99972 * 1 2 3 29 29 H 1.09000 * 109.46833 * 239.99597 * 2 1 3 30 30 H 1.09004 * 109.47152 * 120.00417 * 2 1 3 31 31 H 0.97006 * 119.99998 * 180.02562 * 8 7 5 32 32 H 0.97002 * 119.99887 * 94.99429 * 13 3 2 33 33 H 0.96997 * 119.99587 * 5.03582 * 16 14 13 34 34 H 1.09008 * 109.46984 * 180.02562 * 18 17 16 35 35 H 1.08998 * 109.47295 * 300.00158 * 18 17 16 36 36 H 1.08996 * 109.46732 * 60.00632 * 18 17 16 37 37 H 1.08994 * 115.56150 * 330.68316 * 19 17 16 38 38 H 1.09003 * 117.49773 * 145.02388 * 20 19 17 39 39 H 1.08997 * 117.49915 * 359.97438 * 20 19 17 40 40 H 1.08994 * 117.49639 * 0.02562 * 21 19 17 41 41 H 1.08994 * 117.51658 * 214.96881 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3365 -2.1729 9 14 6.0050 0.8798 -1.3813 10 1 6.5539 -0.3522 -0.7599 11 1 6.3835 0.9212 -2.8166 12 1 6.5576 2.0718 -0.6891 13 7 1.6525 2.0975 1.2517 14 6 0.4353 2.6644 1.3670 15 8 -0.3411 2.6325 0.4317 16 7 0.0789 3.2675 2.5184 17 6 -1.2812 3.7862 2.6831 18 6 -1.5234 4.9117 1.6755 19 6 -2.2890 2.6605 2.4424 20 6 -3.7743 3.0278 2.4529 21 6 -3.1728 2.2400 3.6185 22 6 -1.4517 4.3281 4.1038 23 9 -1.1856 3.3105 5.0262 24 9 -0.5614 5.3877 4.3087 25 9 -2.7639 4.7818 4.2755 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0620 -2.9496 32 1 2.2720 2.1231 1.9977 33 1 0.7231 3.3580 3.2380 34 1 -2.5353 5.2979 1.7984 35 1 -0.8054 5.7137 1.8470 36 1 -1.4020 4.5256 0.6635 37 1 -1.9680 1.8819 1.7505 38 1 -4.4304 2.4907 1.7678 39 1 -4.0334 4.0713 2.6316 40 1 -3.0365 2.7657 4.5636 41 1 -3.4335 1.1849 3.7005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933580009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:48 Heat of formation + Delta-G solvation = -149.872281 kcal Electronic energy + Delta-G solvation = -27746.345183 eV Core-core repulsion = 23440.725429 eV Total energy + Delta-G solvation = -4305.619754 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.47772 -47.89047 -47.81196 -40.01371 -37.80124 -35.33675 -34.17915 -32.48460 -31.24889 -29.85990 -26.89654 -26.57650 -23.65198 -23.04958 -22.38966 -21.47407 -20.10471 -19.44886 -18.81512 -18.59950 -18.22481 -17.38131 -15.95972 -15.90606 -15.24850 -15.09888 -14.77956 -14.62352 -14.47827 -14.24868 -14.14099 -13.99673 -13.83769 -13.63399 -13.42091 -12.70269 -12.65930 -12.44131 -12.16239 -12.01418 -11.54578 -11.35620 -11.25860 -11.18384 -10.97717 -10.83363 -10.47034 -10.31593 -10.18356 -10.16234 -9.62893 -9.28631 -9.03296 -8.92146 -8.51121 -7.80284 -6.13250 -4.22208 2.37472 2.92764 3.23837 3.31210 3.33334 3.46557 3.67683 3.81068 3.96964 4.04512 4.31206 4.47414 4.78157 4.89591 4.98568 5.17940 5.20952 5.30659 5.53513 5.64573 5.73431 5.86201 6.03924 6.17735 6.31075 6.39968 6.47489 6.59355 6.65548 6.97797 7.10178 7.32505 7.37941 7.47194 7.64222 7.86434 7.98142 8.18738 8.74784 8.86192 9.27606 9.46936 10.92050 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.024392 B = 0.003988 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.634683 B = 7018.809475 C = 7561.676917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.288 3.712 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.720 5.720 14 C 0.705 3.295 15 O -0.582 6.582 16 N -0.749 5.749 17 C 0.199 3.801 18 C -0.167 4.167 19 C -0.156 4.156 20 C -0.168 4.168 21 C -0.197 4.197 22 C 0.449 3.551 23 F -0.174 7.174 24 F -0.178 7.178 25 F -0.172 7.172 26 H 0.020 0.980 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.385 0.615 33 H 0.395 0.605 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.141 0.859 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.798 6.513 12.225 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.371 5.371 14 C 0.405 3.595 15 O -0.460 6.460 16 N -0.408 5.408 17 C 0.109 3.891 18 C -0.225 4.225 19 C -0.175 4.175 20 C -0.206 4.206 21 C -0.233 4.233 22 C 0.394 3.606 23 F -0.155 7.155 24 F -0.159 7.159 25 F -0.153 7.153 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.217 0.783 33 H 0.229 0.771 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.158 0.842 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.459 6.356 11.150 17.205 hybrid contribution 1.608 0.042 0.962 1.875 sum -9.851 6.398 12.112 16.872 Atomic orbital electron populations 1.21824 0.98355 0.97817 1.01222 1.21952 0.92677 0.99938 1.02172 1.18690 0.93915 0.88814 0.79996 0.93206 1.21233 0.90748 1.39000 1.06244 0.92153 1.24865 0.98543 0.94828 0.95368 1.69893 1.35092 1.37572 1.09373 0.86462 0.84925 0.78420 0.77364 1.20580 1.21090 1.19901 1.45817 1.13501 1.58578 1.19239 1.15873 0.83540 0.78340 0.81749 1.90866 1.52049 1.65019 1.38071 1.45036 1.11218 1.65686 1.18861 1.20486 0.84979 0.95197 0.88476 1.22340 1.02135 0.96095 1.01934 1.22661 0.90839 1.00716 1.03289 1.23095 0.94795 1.01433 1.01254 1.23513 1.04292 1.01736 0.93792 1.20718 0.74029 0.75999 0.89811 1.93176 1.93411 1.59486 1.69409 1.93197 1.68493 1.58307 1.95922 1.93144 1.36596 1.89483 1.96094 0.96121 0.94230 0.93117 0.88336 0.95152 0.92571 0.78330 0.77053 0.91110 0.91516 0.87383 0.84176 0.88241 0.88159 0.88168 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.51 37.16 0.32 -2.59 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.29 6.97 2.24 -69.09 -0.15 6.82 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -13.73 8.73 -34.44 -0.30 -14.03 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.23 11.29 55.43 0.63 -23.60 16 9 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.72 -14.24 5.03 -59.82 -0.30 -14.54 16 14 C 0.70 13.03 6.36 -86.92 -0.55 12.48 16 15 O -0.58 -12.25 10.04 5.28 0.05 -12.19 16 16 N -0.75 -10.84 4.96 -52.42 -0.26 -11.10 16 17 C 0.20 2.61 0.46 -131.82 -0.06 2.55 16 18 C -0.17 -2.16 8.00 37.16 0.30 -1.87 16 19 C -0.16 -2.09 4.83 -90.61 -0.44 -2.53 16 20 C -0.17 -1.87 9.18 -26.72 -0.25 -2.12 16 21 C -0.20 -2.26 8.95 -26.72 -0.24 -2.49 16 22 C 0.45 5.33 1.83 37.16 0.07 5.40 16 23 F -0.17 -2.09 14.81 2.25 0.03 -2.05 16 24 F -0.18 -2.12 16.62 2.25 0.04 -2.08 16 25 F -0.17 -1.92 12.98 2.25 0.03 -1.89 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.82 5.19 -51.93 -0.27 0.55 16 28 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 29 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.38 6.70 8.56 -40.82 -0.35 6.35 16 33 H 0.40 4.94 8.39 -40.82 -0.34 4.60 16 34 H 0.07 0.77 6.70 -51.92 -0.35 0.42 16 35 H 0.07 0.83 7.75 -51.93 -0.40 0.42 16 36 H 0.11 1.69 6.29 -51.93 -0.33 1.36 16 37 H 0.14 2.30 5.95 -51.93 -0.31 1.99 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.10 1.03 5.94 -51.93 -0.31 0.72 16 40 H 0.10 1.13 4.52 -51.93 -0.23 0.90 16 41 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 325.69 15.07 4.91 4.91 Total: -1.00 -27.55 325.69 -6.68 -34.23 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -5.23 Total: 12.93 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.55 Total: 0.11 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.07 Total: -49.24 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.05 Total: -12.19 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.10 Total: -6.03 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.55 -6.68 -34.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933580009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.643 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds