Wall clock time and date at job start Tue Mar 31 2020 09:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47230 * 2 1 4 4 H 1.08996 * 109.47060 * 304.99610 * 3 2 1 5 5 C 1.50703 * 109.47017 * 185.00234 * 3 2 1 6 6 H 1.07998 * 120.00067 * 239.99630 * 5 3 2 7 7 C 1.37882 * 120.00157 * 59.99966 * 5 3 2 8 8 N 1.31512 * 119.99786 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00066 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47423 * 89.99538 * 9 7 5 11 11 H 1.48500 * 109.47147 * 209.99847 * 9 7 5 12 12 H 1.48502 * 109.46975 * 329.99620 * 9 7 5 13 13 N 1.46493 * 109.47481 * 65.00078 * 3 2 1 14 14 C 1.34771 * 120.00264 * 275.00423 * 13 3 2 15 15 O 1.21593 * 119.99631 * 359.97438 * 14 13 3 16 16 N 1.34781 * 120.00442 * 180.02562 * 14 13 3 17 17 C 1.46493 * 119.99794 * 185.03645 * 16 14 13 18 18 C 1.52999 * 109.47470 * 296.03019 * 17 16 14 19 19 C 1.52999 * 109.47292 * 56.03476 * 17 16 14 20 20 C 1.53006 * 117.49763 * 184.99594 * 19 17 16 21 21 C 1.53008 * 117.49933 * 116.37259 * 19 17 16 22 22 C 1.53002 * 109.46873 * 176.03124 * 17 16 14 23 23 F 1.39903 * 109.47215 * 302.00420 * 22 17 16 24 24 F 1.39901 * 109.47237 * 62.00394 * 22 17 16 25 25 F 1.39897 * 109.47403 * 182.00248 * 22 17 16 26 26 H 1.08996 * 109.47482 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46833 * 300.00403 * 1 2 3 28 28 H 1.08999 * 109.46880 * 59.99972 * 1 2 3 29 29 H 1.09000 * 109.46833 * 239.99597 * 2 1 3 30 30 H 1.09004 * 109.47152 * 120.00417 * 2 1 3 31 31 H 0.97006 * 119.99998 * 180.02562 * 8 7 5 32 32 H 0.97002 * 119.99887 * 94.99429 * 13 3 2 33 33 H 0.96997 * 119.99587 * 5.03582 * 16 14 13 34 34 H 1.09008 * 109.46984 * 180.02562 * 18 17 16 35 35 H 1.08998 * 109.47295 * 300.00158 * 18 17 16 36 36 H 1.08996 * 109.46732 * 60.00632 * 18 17 16 37 37 H 1.08994 * 115.56150 * 330.68316 * 19 17 16 38 38 H 1.09003 * 117.49773 * 145.02388 * 20 19 17 39 39 H 1.08997 * 117.49915 * 359.97438 * 20 19 17 40 40 H 1.08994 * 117.49639 * 0.02562 * 21 19 17 41 41 H 1.08994 * 117.51658 * 214.96881 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3365 -2.1729 9 14 6.0050 0.8798 -1.3813 10 1 6.5539 -0.3522 -0.7599 11 1 6.3835 0.9212 -2.8166 12 1 6.5576 2.0718 -0.6891 13 7 1.6525 2.0975 1.2517 14 6 0.4353 2.6644 1.3670 15 8 -0.3411 2.6325 0.4317 16 7 0.0789 3.2675 2.5184 17 6 -1.2812 3.7862 2.6831 18 6 -1.5234 4.9117 1.6755 19 6 -2.2890 2.6605 2.4424 20 6 -3.7743 3.0278 2.4529 21 6 -3.1728 2.2400 3.6185 22 6 -1.4517 4.3281 4.1038 23 9 -1.1856 3.3105 5.0262 24 9 -0.5614 5.3877 4.3087 25 9 -2.7639 4.7818 4.2755 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0620 -2.9496 32 1 2.2720 2.1231 1.9977 33 1 0.7231 3.3580 3.2380 34 1 -2.5353 5.2979 1.7984 35 1 -0.8054 5.7137 1.8470 36 1 -1.4020 4.5256 0.6635 37 1 -1.9680 1.8819 1.7505 38 1 -4.4304 2.4907 1.7678 39 1 -4.0334 4.0713 2.6316 40 1 -3.0365 2.7657 4.5636 41 1 -3.4335 1.1849 3.7005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933580009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:47 Heat of formation + Delta-G solvation = -166.865331 kcal Electronic energy + Delta-G solvation = -27747.082057 eV Core-core repulsion = 23440.725429 eV Total energy + Delta-G solvation = -4306.356628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.43113 -48.83368 -48.76347 -41.39960 -39.03714 -36.96484 -35.52678 -34.29389 -32.93306 -31.25087 -28.72795 -27.65612 -25.07477 -24.56163 -23.29290 -22.87348 -21.57118 -21.03056 -19.89308 -19.59714 -19.50800 -18.79290 -17.62738 -17.12085 -16.82615 -16.52518 -16.03812 -15.72896 -15.60223 -15.30989 -15.23788 -15.10337 -15.01913 -14.90550 -14.69582 -14.49378 -13.97446 -13.67676 -13.44235 -13.37612 -13.18642 -13.09391 -12.85680 -12.64296 -12.26528 -12.24011 -12.13224 -12.00435 -11.52895 -11.46100 -11.14925 -11.00965 -10.80683 -10.50036 -10.23853 -9.50499 -8.13337 -6.29519 1.29444 1.46487 1.47357 1.57048 1.73776 2.30299 2.43761 2.47449 2.79159 2.90617 3.04951 3.16498 3.35020 3.62949 3.80827 3.94401 4.17830 4.30749 4.54284 4.56203 4.62874 4.69743 4.72653 4.79939 4.96273 5.03833 5.15095 5.17805 5.22339 5.31654 5.38985 5.50514 5.58745 5.65598 5.79021 5.90626 6.21582 6.25977 6.79041 7.31178 7.38759 7.81202 8.91867 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.024392 B = 0.003988 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.634683 B = 7018.809475 C = 7561.676917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.299 3.701 4 H 0.003 0.997 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.721 5.721 14 C 0.707 3.293 15 O -0.608 6.608 16 N -0.735 5.735 17 C 0.195 3.805 18 C -0.164 4.164 19 C -0.177 4.177 20 C -0.156 4.156 21 C -0.186 4.186 22 C 0.460 3.540 23 F -0.172 7.172 24 F -0.176 7.176 25 F -0.163 7.163 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.398 0.602 33 H 0.407 0.593 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.930 7.131 14.182 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.160 4.160 3 C 0.195 3.805 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.373 5.373 14 C 0.407 3.593 15 O -0.487 6.487 16 N -0.394 5.394 17 C 0.106 3.894 18 C -0.222 4.222 19 C -0.196 4.196 20 C -0.193 4.193 21 C -0.223 4.223 22 C 0.405 3.595 23 F -0.153 7.153 24 F -0.157 7.157 25 F -0.145 7.145 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.232 0.768 33 H 0.243 0.757 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.600 7.000 13.170 18.894 hybrid contribution 1.574 -0.120 0.362 1.620 sum -10.026 6.880 13.532 18.192 Atomic orbital electron populations 1.21640 0.96813 0.98741 1.00427 1.21796 0.93933 0.99326 1.00988 1.18219 0.93191 0.88735 0.80322 0.97957 1.21575 0.91594 1.38779 1.06535 0.91282 1.25699 1.02970 0.94483 0.95073 1.70043 1.36893 1.38370 1.09880 0.85420 0.79524 0.78736 0.77080 1.19861 1.21325 1.19070 1.45460 1.14493 1.58994 1.18358 1.15864 0.82762 0.78236 0.82422 1.90863 1.52660 1.65794 1.39429 1.44789 1.12297 1.64493 1.17784 1.20588 0.83885 0.95311 0.89665 1.22280 1.03725 0.95993 1.00153 1.22468 0.92233 1.00570 1.04369 1.23201 0.92971 1.02259 1.00895 1.23560 1.02841 1.02336 0.93525 1.20341 0.74382 0.75959 0.88811 1.93185 1.93440 1.59508 1.69206 1.93209 1.68496 1.58163 1.95836 1.93163 1.35990 1.89355 1.95970 0.94214 0.93538 0.95330 0.91131 0.94489 0.92662 0.76809 0.75683 0.88863 0.91029 0.90308 0.87350 0.87598 0.86867 0.87579 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.51 71.98 0.61 -4.59 16 2 C -0.12 -5.85 5.45 30.59 0.17 -5.68 16 3 C 0.30 14.86 2.24 44.25 0.10 14.96 16 4 H 0.00 0.15 7.58 -2.39 -0.02 0.13 16 5 C -0.55 -28.29 8.73 25.60 0.22 -28.06 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -51.40 11.29 21.45 0.24 -51.15 16 9 Si 0.97 41.58 29.54 68.60 2.03 43.60 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 13 N -0.72 -28.60 5.03 -461.43 -2.32 -30.92 16 14 C 0.71 26.29 6.36 179.05 1.14 27.43 16 15 O -0.61 -26.31 10.04 -4.01 -0.04 -26.35 16 16 N -0.74 -20.61 4.96 -438.01 -2.17 -22.79 16 17 C 0.19 4.86 0.46 3.61 0.00 4.86 16 18 C -0.16 -4.06 8.00 71.98 0.58 -3.49 16 19 C -0.18 -4.57 4.83 -10.79 -0.05 -4.62 16 20 C -0.16 -3.16 9.18 30.60 0.28 -2.88 16 21 C -0.19 -3.87 8.95 30.60 0.27 -3.60 16 22 C 0.46 9.80 1.83 71.98 0.13 9.93 16 23 F -0.17 -3.70 14.81 44.97 0.67 -3.04 16 24 F -0.18 -3.75 16.62 44.97 0.75 -3.00 16 25 F -0.16 -3.16 12.98 44.97 0.58 -2.58 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 1.95 5.19 -2.39 -0.01 1.93 16 28 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 29 H 0.07 3.83 5.95 -2.39 -0.01 3.82 16 30 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 32 H 0.40 13.57 8.56 -92.71 -0.79 12.78 16 33 H 0.41 9.52 8.39 -92.71 -0.78 8.74 16 34 H 0.09 1.85 6.70 -2.38 -0.02 1.83 16 35 H 0.07 1.68 7.75 -2.39 -0.02 1.66 16 36 H 0.08 2.48 6.29 -2.39 -0.02 2.47 16 37 H 0.11 3.58 5.95 -2.39 -0.01 3.57 16 38 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.11 1.99 5.94 -2.39 -0.01 1.98 16 40 H 0.11 2.10 4.52 -2.39 -0.01 2.09 16 41 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -60.12 325.69 3.16 -56.96 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -0.47 Total: 33.60 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 3.90 Total: 5.67 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -4.25 Total: -104.86 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.04 Total: -26.35 kcal Atomic # 9 Polarization: -10.62 SS G_CDS: 2.00 Total: -8.62 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -60.12 3.16 -56.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933580009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.909 kcal (2) G-P(sol) polarization free energy of solvation -60.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds