Wall clock time and date at job start Tue Mar 31 2020 10:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35367 * 117.00221 * 2 1 4 4 C 1.36090 * 125.58075 * 179.97438 * 3 2 1 5 5 C 1.39906 * 107.18085 * 179.97438 * 4 3 2 6 6 C 1.37827 * 106.67310 * 0.02562 * 5 4 3 7 7 C 1.46135 * 126.02932 * 180.02562 * 6 5 4 8 8 O 1.21772 * 120.00114 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00188 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00164 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.45861 * 35.00091 * 10 9 7 12 12 C 1.53036 * 109.45949 * 275.02625 * 10 9 7 13 13 C 1.53195 * 109.31235 * 178.59999 * 12 10 9 14 14 N 1.46929 * 108.76217 * 54.65341 * 13 12 10 15 15 C 1.36939 * 120.62537 * 126.40656 * 14 13 12 16 16 H 1.07998 * 120.00423 * 332.58728 * 15 14 13 17 17 C 1.38817 * 120.00031 * 152.58290 * 15 14 13 18 18 N 1.31612 * 120.00113 * 159.32014 * 17 15 14 19 19 Si 1.86805 * 119.99776 * 339.32695 * 17 15 14 20 20 H 1.48504 * 109.46850 * 92.93899 * 19 17 15 21 21 H 1.48496 * 109.46824 * 212.93755 * 19 17 15 22 22 H 1.48497 * 109.47265 * 332.93978 * 19 17 15 23 23 C 1.46924 * 118.74232 * 306.38277 * 14 13 12 24 24 C 1.53040 * 109.45977 * 154.97011 * 10 9 7 25 25 H 1.08998 * 109.49805 * 61.43636 * 24 10 9 26 26 C 1.53004 * 109.50082 * 301.37179 * 24 10 9 27 27 O 1.34016 * 125.57759 * 359.69373 * 3 2 1 28 28 H 1.09000 * 109.47526 * 59.99657 * 1 2 3 29 29 H 1.08994 * 109.47595 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46824 * 300.00119 * 1 2 3 31 31 H 1.08004 * 126.40644 * 359.97438 * 4 3 2 32 32 H 1.07997 * 126.66267 * 179.97438 * 5 4 3 33 33 H 0.97005 * 119.99889 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.49993 * 298.56543 * 12 10 9 35 35 H 1.08998 * 109.49615 * 58.66462 * 12 10 9 36 36 H 1.08999 * 109.59749 * 294.87338 * 13 12 10 37 37 H 1.09000 * 109.58953 * 174.43551 * 13 12 10 38 38 H 0.97001 * 119.99852 * 180.02562 * 18 17 15 39 39 H 1.08993 * 109.58961 * 293.82349 * 23 14 13 40 40 H 1.09000 * 109.58531 * 173.39299 * 23 14 13 41 41 H 1.09001 * 109.46710 * 59.99523 * 26 24 10 42 42 H 1.08998 * 109.47147 * 180.02562 * 26 24 10 43 43 H 1.08996 * 109.46963 * 300.00019 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4091 0.0005 5 6 3.5986 2.7924 -0.0003 6 6 2.3522 3.3809 -0.0007 7 6 2.0796 4.8166 -0.0020 8 8 3.0020 5.6115 -0.0025 9 7 0.8071 5.2609 -0.0028 10 6 0.5338 6.7001 -0.0036 11 1 1.2934 7.2137 -0.5930 12 6 0.5622 7.2253 1.4336 13 6 0.3107 8.7364 1.4259 14 7 -0.9450 9.0029 0.7110 15 6 -1.9392 9.7392 1.2980 16 1 -2.0334 9.7588 2.3737 17 6 -2.8260 10.4605 0.5105 18 7 -3.9924 10.8259 0.9985 19 14 -2.3639 10.9124 -1.2422 20 1 -2.8702 9.8709 -2.1718 21 1 -2.9681 12.2233 -1.5910 22 1 -0.8861 11.0022 -1.3570 23 6 -1.1134 8.4648 -0.6457 24 6 -0.8456 6.9568 -0.6148 25 1 -1.6082 6.4642 -0.0116 26 6 -0.8842 6.4013 -2.0399 27 8 1.4265 2.3957 -0.0058 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 4.1528 0.6452 0.0013 32 1 4.5516 3.3004 0.0002 33 1 0.0723 4.6276 -0.0028 34 1 -0.2137 6.7301 2.0173 35 1 1.5372 7.0212 1.8762 36 1 1.1335 9.2414 0.9198 37 1 0.2318 9.0990 2.4508 38 1 -4.6122 11.3296 0.4480 39 1 -0.4068 8.9476 -1.3207 40 1 -2.1321 8.6480 -0.9876 41 1 -0.6909 5.3288 -2.0171 42 1 -1.8666 6.5847 -2.4749 43 1 -0.1222 6.8950 -2.6430 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943756909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:22 Heat of formation + Delta-G solvation = -34.887072 kcal Electronic energy + Delta-G solvation = -25913.063988 eV Core-core repulsion = 22154.287107 eV Total energy + Delta-G solvation = -3758.776881 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.01100 -39.89082 -38.88699 -37.85412 -34.80027 -33.49158 -32.52962 -31.99616 -30.51868 -29.52570 -27.59811 -26.25966 -25.14638 -23.28493 -22.33839 -22.12013 -20.90052 -20.41248 -19.78737 -19.10842 -17.84906 -17.37982 -16.76469 -16.29353 -15.74915 -15.49395 -15.02854 -14.65565 -14.37390 -14.29777 -13.71134 -13.52938 -13.36320 -13.30397 -13.24390 -13.16664 -12.62531 -12.58963 -12.38491 -11.99513 -11.92538 -11.66843 -11.48867 -10.94009 -10.69318 -10.53973 -10.37098 -10.30747 -10.28794 -9.99977 -9.74602 -9.48984 -8.94163 -8.64833 -8.34434 -7.01210 -5.97070 -3.33011 0.84504 1.90208 2.09189 2.76002 3.13281 3.22130 3.29592 3.47756 3.50959 4.49280 4.50910 4.58947 4.66553 4.71394 4.89610 4.94319 4.99314 5.17230 5.26692 5.31450 5.36387 5.43228 5.53957 5.66948 5.84947 5.86322 6.00270 6.01233 6.07890 6.09585 6.18760 6.25027 6.35351 6.37190 6.58384 6.61572 6.66766 6.68824 6.77104 6.90828 7.50057 7.93796 8.10301 8.30986 8.91666 9.69715 10.07166 11.18871 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.003271 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.424596 B = 8556.938418 C = 8931.389364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.263 6.263 3 C 0.210 3.790 4 C -0.241 4.241 5 C -0.086 4.086 6 C -0.096 4.096 7 C 0.604 3.396 8 O -0.522 6.522 9 N -0.711 5.711 10 C 0.156 3.844 11 H 0.087 0.913 12 C -0.143 4.143 13 C 0.151 3.849 14 N -0.607 5.607 15 C -0.260 4.260 16 H 0.086 0.914 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.880 3.120 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.269 1.269 23 C 0.136 3.864 24 C -0.115 4.115 25 H 0.078 0.922 26 C -0.146 4.146 27 O -0.189 6.189 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.400 0.600 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.026 0.974 37 H 0.067 0.933 38 H 0.263 0.737 39 H 0.028 0.972 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.247 -21.521 -3.754 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.177 6.177 3 C 0.114 3.886 4 C -0.261 4.261 5 C -0.106 4.106 6 C -0.146 4.146 7 C 0.390 3.610 8 O -0.400 6.400 9 N -0.360 5.360 10 C 0.053 3.947 11 H 0.105 0.895 12 C -0.183 4.183 13 C 0.024 3.976 14 N -0.330 5.330 15 C -0.388 4.388 16 H 0.104 0.896 17 C -0.175 4.175 18 N -0.551 5.551 19 Si 0.710 3.290 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.194 1.194 23 C 0.009 3.991 24 C -0.136 4.136 25 H 0.097 0.903 26 C -0.204 4.204 27 O -0.090 6.090 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.181 0.819 32 H 0.185 0.815 33 H 0.234 0.766 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.486 -20.933 -3.751 23.711 hybrid contribution -0.485 -0.192 -1.006 1.133 sum 10.000 -21.126 -4.757 23.852 Atomic orbital electron populations 1.23190 0.76457 1.05031 1.02888 1.86403 1.23266 1.18854 1.89197 1.20800 0.89553 0.78231 1.00043 1.20773 0.92056 0.96943 1.16284 1.21989 0.97913 0.92475 0.98263 1.22133 0.86978 0.87482 1.18042 1.16357 0.83838 0.83636 0.77143 1.90911 1.44268 1.53506 1.51344 1.46170 1.06758 1.09445 1.73618 1.21113 0.97645 0.78323 0.97666 0.89502 1.22414 1.01175 0.99255 0.95464 1.20907 0.88018 0.91498 0.97153 1.44414 1.14632 1.60039 1.13875 1.18933 1.04970 1.21754 0.93148 0.89601 1.25282 0.96295 0.98172 0.97789 1.69833 1.06637 1.41174 1.37441 0.86995 0.79025 0.77028 0.85946 1.21570 1.23089 1.19423 1.21376 1.00427 0.89534 0.87715 1.21992 0.95649 1.00091 0.95893 0.90333 1.21802 1.01913 1.00034 0.96602 1.83962 1.37821 1.14277 1.72898 0.91685 0.87130 0.91631 0.81949 0.81493 0.76559 0.91739 0.92008 0.95559 0.91472 0.92754 0.95391 0.90466 0.93218 0.92399 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.74 101.05 1.09 1.19 16 2 O -0.26 -2.30 10.55 -41.02 -0.43 -2.73 16 3 C 0.21 2.16 7.86 29.96 0.24 2.40 16 4 C -0.24 -2.33 10.89 -39.73 -0.43 -2.77 16 5 C -0.09 -0.94 10.66 -39.11 -0.42 -1.36 16 6 C -0.10 -1.20 7.15 -36.57 -0.26 -1.46 16 7 C 0.60 8.81 7.73 -13.09 -0.10 8.71 16 8 O -0.52 -9.14 16.53 5.12 0.08 -9.05 16 9 N -0.71 -9.71 4.36 -55.24 -0.24 -9.95 16 10 C 0.16 2.50 1.88 -67.89 -0.13 2.37 16 11 H 0.09 1.53 7.57 -51.93 -0.39 1.13 16 12 C -0.14 -2.44 5.65 -26.61 -0.15 -2.59 16 13 C 0.15 3.00 6.52 -3.71 -0.02 2.97 16 14 N -0.61 -14.20 2.77 -172.32 -0.48 -14.68 16 15 C -0.26 -7.17 10.03 -15.06 -0.15 -7.32 16 16 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 17 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 18 N -0.91 -27.58 13.97 55.49 0.78 -26.80 16 19 Si 0.88 22.13 24.35 -169.99 -4.14 17.99 16 20 H -0.29 -6.91 6.62 56.52 0.37 -6.54 16 21 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 22 H -0.27 -6.70 6.64 56.52 0.38 -6.32 16 23 C 0.14 2.88 3.49 -3.71 -0.01 2.87 16 24 C -0.12 -1.94 2.46 -90.50 -0.22 -2.16 16 25 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 26 C -0.15 -2.06 9.03 37.16 0.34 -1.72 16 27 O -0.19 -2.12 9.88 -19.27 -0.19 -2.31 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 31 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.40 4.69 8.05 -40.82 -0.33 4.36 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.33 7.93 -51.93 -0.41 0.91 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.03 0.60 7.08 -51.93 -0.37 0.23 16 40 H 0.08 1.79 4.50 -51.93 -0.23 1.56 16 41 H 0.05 0.60 7.36 -51.93 -0.38 0.22 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -32.22 350.34 -6.06 -38.27 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.38 Total: 2.28 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.34 Total: 1.71 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.06 Total: -51.44 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.54 Total: -14.10 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.22 -6.06 -38.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943756909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.388 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds