Wall clock time and date at job start Tue Mar 31 2020 10:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35367 * 117.00221 * 2 1 4 4 C 1.36090 * 125.58075 * 179.97438 * 3 2 1 5 5 C 1.39906 * 107.18085 * 179.97438 * 4 3 2 6 6 C 1.37827 * 106.67310 * 0.02562 * 5 4 3 7 7 C 1.46135 * 126.02932 * 180.02562 * 6 5 4 8 8 O 1.21772 * 120.00114 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00188 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00164 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.45861 * 35.00091 * 10 9 7 12 12 C 1.53036 * 109.45949 * 275.02625 * 10 9 7 13 13 C 1.53195 * 109.31235 * 178.59999 * 12 10 9 14 14 N 1.46929 * 108.76217 * 54.65341 * 13 12 10 15 15 C 1.36939 * 120.62537 * 126.40656 * 14 13 12 16 16 H 1.07998 * 120.00423 * 332.58728 * 15 14 13 17 17 C 1.38817 * 120.00031 * 152.58290 * 15 14 13 18 18 N 1.31612 * 120.00113 * 159.32014 * 17 15 14 19 19 Si 1.86805 * 119.99776 * 339.32695 * 17 15 14 20 20 H 1.48504 * 109.46850 * 92.93899 * 19 17 15 21 21 H 1.48496 * 109.46824 * 212.93755 * 19 17 15 22 22 H 1.48497 * 109.47265 * 332.93978 * 19 17 15 23 23 C 1.46924 * 118.74232 * 306.38277 * 14 13 12 24 24 C 1.53040 * 109.45977 * 154.97011 * 10 9 7 25 25 H 1.08998 * 109.49805 * 61.43636 * 24 10 9 26 26 C 1.53004 * 109.50082 * 301.37179 * 24 10 9 27 27 O 1.34016 * 125.57759 * 359.69373 * 3 2 1 28 28 H 1.09000 * 109.47526 * 59.99657 * 1 2 3 29 29 H 1.08994 * 109.47595 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46824 * 300.00119 * 1 2 3 31 31 H 1.08004 * 126.40644 * 359.97438 * 4 3 2 32 32 H 1.07997 * 126.66267 * 179.97438 * 5 4 3 33 33 H 0.97005 * 119.99889 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.49993 * 298.56543 * 12 10 9 35 35 H 1.08998 * 109.49615 * 58.66462 * 12 10 9 36 36 H 1.08999 * 109.59749 * 294.87338 * 13 12 10 37 37 H 1.09000 * 109.58953 * 174.43551 * 13 12 10 38 38 H 0.97001 * 119.99852 * 180.02562 * 18 17 15 39 39 H 1.08993 * 109.58961 * 293.82349 * 23 14 13 40 40 H 1.09000 * 109.58531 * 173.39299 * 23 14 13 41 41 H 1.09001 * 109.46710 * 59.99523 * 26 24 10 42 42 H 1.08998 * 109.47147 * 180.02562 * 26 24 10 43 43 H 1.08996 * 109.46963 * 300.00019 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4091 0.0005 5 6 3.5986 2.7924 -0.0003 6 6 2.3522 3.3809 -0.0007 7 6 2.0796 4.8166 -0.0020 8 8 3.0020 5.6115 -0.0025 9 7 0.8071 5.2609 -0.0028 10 6 0.5338 6.7001 -0.0036 11 1 1.2934 7.2137 -0.5930 12 6 0.5622 7.2253 1.4336 13 6 0.3107 8.7364 1.4259 14 7 -0.9450 9.0029 0.7110 15 6 -1.9392 9.7392 1.2980 16 1 -2.0334 9.7588 2.3737 17 6 -2.8260 10.4605 0.5105 18 7 -3.9924 10.8259 0.9985 19 14 -2.3639 10.9124 -1.2422 20 1 -2.8702 9.8709 -2.1718 21 1 -2.9681 12.2233 -1.5910 22 1 -0.8861 11.0022 -1.3570 23 6 -1.1134 8.4648 -0.6457 24 6 -0.8456 6.9568 -0.6148 25 1 -1.6082 6.4642 -0.0116 26 6 -0.8842 6.4013 -2.0399 27 8 1.4265 2.3957 -0.0058 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 4.1528 0.6452 0.0013 32 1 4.5516 3.3004 0.0002 33 1 0.0723 4.6276 -0.0028 34 1 -0.2137 6.7301 2.0173 35 1 1.5372 7.0212 1.8762 36 1 1.1335 9.2414 0.9198 37 1 0.2318 9.0990 2.4508 38 1 -4.6122 11.3296 0.4480 39 1 -0.4068 8.9476 -1.3207 40 1 -2.1321 8.6480 -0.9876 41 1 -0.6909 5.3288 -2.0171 42 1 -1.8666 6.5847 -2.4749 43 1 -0.1222 6.8950 -2.6430 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943756909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:22 Heat of formation + Delta-G solvation = -56.529465 kcal Electronic energy + Delta-G solvation = -25914.002472 eV Core-core repulsion = 22154.287107 eV Total energy + Delta-G solvation = -3759.715365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.81970 -41.10928 -39.64673 -39.21908 -36.32554 -34.40796 -34.06442 -33.62839 -32.06734 -30.48367 -28.27744 -27.69207 -26.77750 -24.70533 -23.43765 -23.01593 -22.44379 -21.48412 -21.17993 -19.95907 -19.08839 -18.48383 -18.13836 -17.65687 -16.86144 -16.37195 -16.27915 -16.06041 -15.76915 -15.52945 -15.16888 -14.88744 -14.68992 -14.38298 -14.35844 -14.28769 -13.98627 -13.91755 -13.45886 -13.24812 -13.02882 -13.01908 -12.57278 -12.51914 -12.37603 -12.07643 -11.97983 -11.78347 -11.55953 -11.46185 -11.26271 -11.10425 -10.70395 -10.18396 -9.16280 -8.97733 -8.17214 -5.49651 -0.05634 1.10389 1.28719 1.30266 1.42093 1.50636 1.95316 2.09406 2.26510 2.40679 3.03450 3.30659 3.59180 3.73482 3.80464 3.91083 4.00975 4.21515 4.24961 4.26256 4.33380 4.41937 4.50936 4.53494 4.59076 4.66740 4.67963 4.75275 4.84883 4.85331 4.93471 4.97581 5.04445 5.16711 5.24765 5.26537 5.32845 5.39098 5.49424 5.85745 6.04815 6.12041 6.43097 6.89339 7.01371 7.60033 8.00587 9.02569 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.003271 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.424596 B = 8556.938418 C = 8931.389364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.266 6.266 3 C 0.214 3.786 4 C -0.243 4.243 5 C -0.076 4.076 6 C -0.124 4.124 7 C 0.608 3.392 8 O -0.557 6.557 9 N -0.701 5.701 10 C 0.166 3.834 11 H 0.077 0.923 12 C -0.131 4.131 13 C 0.147 3.853 14 N -0.619 5.619 15 C -0.249 4.249 16 H 0.054 0.946 17 C -0.032 4.032 18 N -0.955 5.955 19 Si 0.941 3.059 20 H -0.268 1.268 21 H -0.311 1.311 22 H -0.264 1.264 23 C 0.130 3.870 24 C -0.105 4.105 25 H 0.076 0.924 26 C -0.140 4.140 27 O -0.191 6.191 28 H 0.068 0.932 29 H 0.138 0.862 30 H 0.066 0.934 31 H 0.187 0.813 32 H 0.177 0.823 33 H 0.412 0.588 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.032 0.968 37 H 0.060 0.940 38 H 0.262 0.738 39 H 0.032 0.968 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.491 -24.269 -5.216 27.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.180 6.180 3 C 0.117 3.883 4 C -0.262 4.262 5 C -0.097 4.097 6 C -0.174 4.174 7 C 0.396 3.604 8 O -0.438 6.438 9 N -0.351 5.351 10 C 0.062 3.938 11 H 0.095 0.905 12 C -0.171 4.171 13 C 0.022 3.978 14 N -0.344 5.344 15 C -0.379 4.379 16 H 0.072 0.928 17 C -0.227 4.227 18 N -0.601 5.601 19 Si 0.770 3.230 20 H -0.195 1.195 21 H -0.240 1.240 22 H -0.189 1.189 23 C 0.005 3.995 24 C -0.125 4.125 25 H 0.095 0.905 26 C -0.198 4.198 27 O -0.092 6.092 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.085 0.915 31 H 0.204 0.796 32 H 0.194 0.806 33 H 0.248 0.752 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.744 -23.740 -5.228 26.997 hybrid contribution -0.846 0.512 -0.451 1.086 sum 10.898 -23.228 -5.679 26.279 Atomic orbital electron populations 1.23491 0.74762 1.06999 1.03111 1.86425 1.24987 1.17860 1.88754 1.21123 0.90039 0.78354 0.98817 1.21090 0.92522 0.96864 1.15747 1.22258 0.97836 0.93172 0.96435 1.21705 0.87736 0.86814 1.21121 1.16502 0.83338 0.84379 0.76203 1.90888 1.45131 1.54727 1.53018 1.45915 1.07176 1.08445 1.73523 1.20800 0.96823 0.79719 0.96473 0.90521 1.22243 1.01430 0.96934 0.96471 1.21022 0.86664 0.93644 0.96507 1.44521 1.14964 1.60022 1.14846 1.18868 1.05445 1.21529 0.92037 0.92848 1.25868 0.96172 0.98729 1.01885 1.69956 1.07894 1.43007 1.39268 0.85995 0.78731 0.76532 0.81756 1.19467 1.24009 1.18887 1.21421 0.99322 0.92498 0.86273 1.21791 0.95906 0.96852 0.97996 0.90548 1.21770 1.02260 1.01415 0.94380 1.83924 1.37663 1.14427 1.73163 0.91334 0.84409 0.91527 0.79573 0.80577 0.75208 0.91951 0.91188 0.94949 0.92106 0.92889 0.95034 0.92434 0.90805 0.92090 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 10.74 113.37 1.22 1.30 16 2 O -0.27 -3.91 10.55 -64.36 -0.68 -4.59 16 3 C 0.21 3.84 7.86 67.32 0.53 4.36 16 4 C -0.24 -4.03 10.89 22.17 0.24 -3.79 16 5 C -0.08 -1.51 10.66 22.58 0.24 -1.27 16 6 C -0.12 -2.86 7.15 24.22 0.17 -2.69 16 7 C 0.61 16.75 7.73 86.29 0.67 17.42 16 8 O -0.56 -18.87 16.53 -4.58 -0.08 -18.94 16 9 N -0.70 -17.78 4.36 -446.86 -1.95 -19.73 16 10 C 0.17 5.07 1.88 45.02 0.08 5.15 16 11 H 0.08 2.57 7.57 -2.39 -0.02 2.55 16 12 C -0.13 -4.33 5.65 30.67 0.17 -4.16 16 13 C 0.15 5.82 6.52 86.36 0.56 6.39 16 14 N -0.62 -29.01 2.77 -699.09 -1.94 -30.95 16 15 C -0.25 -14.09 10.03 84.03 0.84 -13.24 16 16 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 17 C -0.03 -1.84 5.23 84.86 0.44 -1.39 16 18 N -0.96 -59.68 13.97 21.65 0.30 -59.38 16 19 Si 0.94 46.14 24.35 68.60 1.67 47.81 16 20 H -0.27 -12.18 6.62 99.48 0.66 -11.52 16 21 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 22 H -0.26 -12.58 6.64 99.48 0.66 -11.92 16 23 C 0.13 5.38 3.49 86.36 0.30 5.68 16 24 C -0.10 -3.33 2.46 -10.71 -0.03 -3.35 16 25 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 26 C -0.14 -3.58 9.03 71.98 0.65 -2.93 16 27 O -0.19 -3.86 9.88 13.47 0.13 -3.73 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.41 8.65 8.05 -92.70 -0.75 7.91 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 38 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.03 1.29 7.08 -2.39 -0.02 1.28 16 40 H 0.06 2.61 4.50 -2.39 -0.01 2.60 16 41 H 0.07 1.53 7.36 -2.39 -0.02 1.52 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -70.34 350.34 3.75 -66.59 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.18 Total: 15.42 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 6.10 Total: 7.48 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -3.58 Total: -110.05 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.62 Total: -27.26 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.81 kcal Total: -70.34 3.75 -66.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943756909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.064 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds