Wall clock time and date at job start Tue Mar 31 2020 10:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00246 * 2 1 4 4 C 1.50705 * 109.47235 * 180.02562 * 3 2 1 5 5 C 1.35130 * 125.61887 * 89.99766 * 4 3 2 6 6 C 1.40363 * 107.11447 * 180.02562 * 5 4 3 7 7 C 1.36545 * 106.70950 * 0.02562 * 6 5 4 8 8 C 1.46657 * 125.98809 * 179.97438 * 7 6 5 9 9 O 1.21697 * 119.99595 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00123 * 179.97438 * 8 7 6 11 11 C 1.47428 * 125.64386 * 0.05052 * 10 8 7 12 12 C 1.54921 * 104.82929 * 204.08294 * 11 10 8 13 13 H 1.08999 * 111.03200 * 81.08246 * 12 11 10 14 14 N 1.46499 * 111.00153 * 204.91625 * 12 11 10 15 15 C 1.36935 * 119.99942 * 267.19345 * 14 12 11 16 16 H 1.07999 * 120.00083 * 0.02562 * 15 14 12 17 17 C 1.38812 * 119.99632 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00227 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99548 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99577 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00184 * 19 17 15 23 23 C 1.55160 * 101.57850 * 322.99372 * 12 11 10 24 24 C 1.47021 * 125.64912 * 180.02562 * 10 8 7 25 25 H 1.09003 * 109.88151 * 298.40039 * 24 10 8 26 26 C 1.52991 * 109.88419 * 59.56572 * 24 10 8 27 27 O 1.33930 * 125.61167 * 270.29592 * 4 3 2 28 28 H 1.09003 * 109.47163 * 300.00367 * 1 2 3 29 29 H 1.09004 * 109.47009 * 59.99707 * 1 2 3 30 30 H 1.08996 * 109.47740 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47325 * 59.99810 * 3 2 1 32 32 H 1.09005 * 109.47198 * 299.99733 * 3 2 1 33 33 H 1.08002 * 126.43972 * 0.02562 * 5 4 3 34 34 H 1.08000 * 126.64360 * 179.97438 * 6 5 4 35 35 H 1.08995 * 110.36971 * 85.25027 * 11 10 8 36 36 H 1.09000 * 110.36963 * 322.91715 * 11 10 8 37 37 H 0.96999 * 119.99980 * 87.20414 * 14 12 11 38 38 H 0.97000 * 120.00284 * 359.97438 * 18 17 15 39 39 H 1.09000 * 110.71574 * 153.86820 * 23 12 11 40 40 H 1.09003 * 110.71818 * 277.13385 * 23 12 11 41 41 H 1.08997 * 109.47378 * 177.80671 * 26 24 10 42 42 H 1.08995 * 109.47223 * 297.81147 * 26 24 10 43 43 H 1.08998 * 109.47207 * 57.80855 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2967 1.1244 -1.0995 6 6 5.6237 1.0186 -0.6545 7 6 5.5816 1.0208 0.7103 8 6 6.7373 0.9278 1.6083 9 8 7.8601 0.8379 1.1476 10 7 6.5559 0.9417 2.9437 11 6 5.2569 1.0445 3.6333 12 6 5.5933 1.6304 5.0274 13 1 5.7124 2.7127 4.9785 14 7 4.5734 1.2610 6.0121 15 6 3.5155 2.0976 6.2488 16 1 3.4327 3.0294 5.7092 17 6 2.5494 1.7478 7.1822 18 7 2.6501 0.6119 7.8395 19 14 1.1058 2.8887 7.5045 20 1 0.2232 2.2903 8.5380 21 1 1.6093 4.2010 7.9838 22 1 0.3376 3.0820 6.2484 23 6 6.9451 0.9356 5.3393 24 6 7.6206 0.8564 3.9540 25 1 8.1514 -0.0904 3.8542 26 6 8.5952 2.0232 3.7826 27 8 4.2900 1.1190 1.0878 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 3.9646 1.1512 -2.1268 34 1 6.5069 0.9481 -1.2721 35 1 4.8027 0.0590 3.7356 36 1 4.5912 1.7155 3.0904 37 1 4.6477 0.4240 6.4966 38 1 3.3991 0.0190 7.6713 39 1 7.5401 1.5396 6.0243 40 1 6.7810 -0.0622 5.7463 41 1 9.3592 1.9754 4.5585 42 1 9.0682 1.9605 2.8026 43 1 8.0526 2.9649 3.8646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989141879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:33 Heat of formation + Delta-G solvation = -42.509050 kcal Electronic energy + Delta-G solvation = -25954.097813 eV Core-core repulsion = 22194.990418 eV Total energy + Delta-G solvation = -3759.107394 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.75183 -39.87669 -38.03349 -37.51851 -34.54838 -33.26693 -32.09063 -31.39590 -30.92819 -28.19099 -27.47511 -25.82623 -25.50151 -23.81275 -22.93048 -21.73747 -20.97651 -20.33476 -19.36648 -17.63996 -17.46281 -17.00932 -16.51655 -16.02718 -16.00997 -15.69238 -15.21190 -14.53096 -14.31861 -14.01259 -13.72096 -13.56414 -13.37578 -13.18364 -13.03484 -12.88403 -12.79422 -12.46145 -12.11186 -12.00203 -11.90363 -11.65865 -11.05958 -11.02544 -10.73296 -10.60388 -10.26223 -10.10974 -10.07740 -10.04403 -9.98007 -9.27370 -9.06594 -8.78396 -8.40616 -7.19527 -6.20321 -3.22654 0.98026 2.15324 2.51598 3.10969 3.24723 3.45510 3.48560 3.66437 3.77398 4.41746 4.57178 4.65137 4.81766 4.90963 4.98027 5.04518 5.06576 5.12405 5.15994 5.23314 5.37583 5.50049 5.51814 5.55946 5.57051 5.70951 5.72272 5.76916 5.78449 5.93983 6.08986 6.16972 6.17105 6.26817 6.34144 6.45964 6.53822 6.73431 6.80334 6.89795 7.59472 7.70835 8.13122 8.64998 9.08682 9.95336 10.08651 11.27380 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.008703 B = 0.005628 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.465600 B = 4974.171518 C = 7760.248235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.138 3.862 4 C 0.010 3.990 5 C -0.197 4.197 6 C -0.130 4.130 7 C -0.057 4.057 8 C 0.612 3.388 9 O -0.532 6.532 10 N -0.598 5.598 11 C 0.073 3.927 12 C 0.180 3.820 13 H 0.070 0.930 14 N -0.722 5.722 15 C -0.339 4.339 16 H 0.066 0.934 17 C -0.039 4.039 18 N -0.939 5.939 19 Si 1.079 2.921 20 H -0.284 1.284 21 H -0.294 1.294 22 H -0.295 1.295 23 C -0.140 4.140 24 C 0.139 3.861 25 H 0.074 0.926 26 C -0.162 4.162 27 O -0.143 6.143 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.370 0.630 38 H 0.256 0.744 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.010 1.650 -16.079 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.062 3.938 4 C -0.043 4.043 5 C -0.216 4.216 6 C -0.151 4.151 7 C -0.109 4.109 8 C 0.400 3.600 9 O -0.411 6.411 10 N -0.330 5.330 11 C -0.052 4.052 12 C 0.067 3.933 13 H 0.088 0.912 14 N -0.362 5.362 15 C -0.470 4.470 16 H 0.084 0.916 17 C -0.237 4.237 18 N -0.583 5.583 19 Si 0.910 3.090 20 H -0.209 1.209 21 H -0.221 1.221 22 H -0.222 1.222 23 C -0.179 4.179 24 C 0.036 3.964 25 H 0.092 0.908 26 C -0.220 4.220 27 O -0.038 6.038 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.204 0.796 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.165 1.852 -15.216 15.373 hybrid contribution 1.133 -0.301 -1.074 1.590 sum 2.299 1.551 -16.290 16.524 Atomic orbital electron populations 1.22817 0.79920 1.03375 1.00419 1.87978 1.20411 1.26437 1.95532 1.20746 0.84146 0.86139 1.02806 1.22306 0.92961 1.04413 0.84611 1.21566 0.92364 1.08118 0.99574 1.21881 0.98470 1.01924 0.92783 1.22131 0.82269 1.12074 0.94466 1.16222 0.85860 0.77542 0.80348 1.90827 1.22214 1.52405 1.75694 1.48524 1.10343 1.70090 1.04063 1.23638 0.83472 1.02048 0.96084 1.21217 0.87521 0.97247 0.87275 0.91243 1.42316 1.25555 1.23617 1.44751 1.20043 1.02507 1.01960 1.22487 0.91571 1.25791 1.01698 1.00556 0.95688 1.70889 1.33003 1.10979 1.43459 0.83260 0.75502 0.74261 0.76022 1.20937 1.22130 1.22222 1.23065 0.98047 1.02196 0.94543 1.21557 0.88410 0.99076 0.87320 0.90770 1.22142 0.98959 0.98012 1.02852 1.84251 1.16169 1.69244 1.34103 0.93254 0.93818 0.89140 0.90637 0.89698 0.82604 0.82161 0.91228 0.90401 0.79560 0.93279 0.89873 0.90640 0.91639 0.91314 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.90 10.69 -35.23 -0.38 -5.28 16 3 C 0.14 1.54 6.46 36.01 0.23 1.77 16 4 C 0.01 0.13 6.94 -35.41 -0.25 -0.11 16 5 C -0.20 -2.40 10.77 -39.89 -0.43 -2.83 16 6 C -0.13 -1.79 10.62 -39.39 -0.42 -2.21 16 7 C -0.06 -0.92 6.93 -36.80 -0.25 -1.18 16 8 C 0.61 10.72 7.60 -12.86 -0.10 10.62 16 9 O -0.53 -9.97 15.77 5.19 0.08 -9.89 16 10 N -0.60 -10.19 3.08 -164.55 -0.51 -10.69 16 11 C 0.07 1.35 5.86 -2.52 -0.01 1.34 16 12 C 0.18 3.48 3.71 -65.77 -0.24 3.23 16 13 H 0.07 1.38 8.09 -51.93 -0.42 0.96 16 14 N -0.72 -17.21 5.24 -51.34 -0.27 -17.47 16 15 C -0.34 -9.12 9.96 -15.06 -0.15 -9.27 16 16 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 17 C -0.04 -1.09 5.50 -17.43 -0.10 -1.19 16 18 N -0.94 -28.10 13.70 55.49 0.76 -27.34 16 19 Si 1.08 25.01 29.92 -169.99 -5.09 19.92 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.14 -2.21 6.14 -24.90 -0.15 -2.37 16 24 C 0.14 2.12 3.49 -66.96 -0.23 1.89 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 26 C -0.16 -2.23 9.05 37.15 0.34 -1.89 16 27 O -0.14 -2.35 7.86 4.98 0.04 -2.31 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.16 1.94 8.06 -52.49 -0.42 1.51 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.50 6.23 -51.93 -0.32 1.17 16 37 H 0.37 9.10 6.60 -40.82 -0.27 8.83 16 38 H 0.26 7.53 6.77 -40.82 -0.28 7.25 16 39 H 0.08 1.22 7.83 -51.93 -0.41 0.81 16 40 H 0.07 1.19 8.00 -51.93 -0.42 0.78 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.02 6.77 -51.93 -0.35 0.67 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -32.56 359.14 -6.92 -39.48 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.32 Total: 8.98 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -0.66 Total: -0.80 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.02 Total: -55.51 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.26 Total: -17.48 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.09 Total: 19.92 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.56 -6.92 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989141879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.032 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds