Wall clock time and date at job start Tue Mar 31 2020 10:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00246 * 2 1 4 4 C 1.50705 * 109.47235 * 180.02562 * 3 2 1 5 5 C 1.35130 * 125.61887 * 89.99766 * 4 3 2 6 6 C 1.40363 * 107.11447 * 180.02562 * 5 4 3 7 7 C 1.36545 * 106.70950 * 0.02562 * 6 5 4 8 8 C 1.46657 * 125.98809 * 179.97438 * 7 6 5 9 9 O 1.21697 * 119.99595 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00123 * 179.97438 * 8 7 6 11 11 C 1.47428 * 125.64386 * 0.05052 * 10 8 7 12 12 C 1.54921 * 104.82929 * 204.08294 * 11 10 8 13 13 H 1.08999 * 111.03200 * 81.08246 * 12 11 10 14 14 N 1.46499 * 111.00153 * 204.91625 * 12 11 10 15 15 C 1.36935 * 119.99942 * 267.19345 * 14 12 11 16 16 H 1.07999 * 120.00083 * 0.02562 * 15 14 12 17 17 C 1.38812 * 119.99632 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00227 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99548 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99577 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00184 * 19 17 15 23 23 C 1.55160 * 101.57850 * 322.99372 * 12 11 10 24 24 C 1.47021 * 125.64912 * 180.02562 * 10 8 7 25 25 H 1.09003 * 109.88151 * 298.40039 * 24 10 8 26 26 C 1.52991 * 109.88419 * 59.56572 * 24 10 8 27 27 O 1.33930 * 125.61167 * 270.29592 * 4 3 2 28 28 H 1.09003 * 109.47163 * 300.00367 * 1 2 3 29 29 H 1.09004 * 109.47009 * 59.99707 * 1 2 3 30 30 H 1.08996 * 109.47740 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47325 * 59.99810 * 3 2 1 32 32 H 1.09005 * 109.47198 * 299.99733 * 3 2 1 33 33 H 1.08002 * 126.43972 * 0.02562 * 5 4 3 34 34 H 1.08000 * 126.64360 * 179.97438 * 6 5 4 35 35 H 1.08995 * 110.36971 * 85.25027 * 11 10 8 36 36 H 1.09000 * 110.36963 * 322.91715 * 11 10 8 37 37 H 0.96999 * 119.99980 * 87.20414 * 14 12 11 38 38 H 0.97000 * 120.00284 * 359.97438 * 18 17 15 39 39 H 1.09000 * 110.71574 * 153.86820 * 23 12 11 40 40 H 1.09003 * 110.71818 * 277.13385 * 23 12 11 41 41 H 1.08997 * 109.47378 * 177.80671 * 26 24 10 42 42 H 1.08995 * 109.47223 * 297.81147 * 26 24 10 43 43 H 1.08998 * 109.47207 * 57.80855 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2967 1.1244 -1.0995 6 6 5.6237 1.0186 -0.6545 7 6 5.5816 1.0208 0.7103 8 6 6.7373 0.9278 1.6083 9 8 7.8601 0.8379 1.1476 10 7 6.5559 0.9417 2.9437 11 6 5.2569 1.0445 3.6333 12 6 5.5933 1.6304 5.0274 13 1 5.7124 2.7127 4.9785 14 7 4.5734 1.2610 6.0121 15 6 3.5155 2.0976 6.2488 16 1 3.4327 3.0294 5.7092 17 6 2.5494 1.7478 7.1822 18 7 2.6501 0.6119 7.8395 19 14 1.1058 2.8887 7.5045 20 1 0.2232 2.2903 8.5380 21 1 1.6093 4.2010 7.9838 22 1 0.3376 3.0820 6.2484 23 6 6.9451 0.9356 5.3393 24 6 7.6206 0.8564 3.9540 25 1 8.1514 -0.0904 3.8542 26 6 8.5952 2.0232 3.7826 27 8 4.2900 1.1190 1.0878 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 3.9646 1.1512 -2.1268 34 1 6.5069 0.9481 -1.2721 35 1 4.8027 0.0590 3.7356 36 1 4.5912 1.7155 3.0904 37 1 4.6477 0.4240 6.4966 38 1 3.3991 0.0190 7.6713 39 1 7.5401 1.5396 6.0243 40 1 6.7810 -0.0622 5.7463 41 1 9.3592 1.9754 4.5585 42 1 9.0682 1.9605 2.8026 43 1 8.0526 2.9649 3.8646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989141879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:32 Heat of formation + Delta-G solvation = -64.105030 kcal Electronic energy + Delta-G solvation = -25955.034285 eV Core-core repulsion = 22194.990418 eV Total energy + Delta-G solvation = -3760.043866 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.86040 -41.24820 -39.01535 -38.84463 -36.39690 -34.36072 -33.45644 -33.08970 -31.98721 -29.87740 -28.41838 -26.92866 -26.62450 -25.71281 -24.24961 -22.90612 -22.24405 -21.70528 -20.62432 -19.56426 -18.82083 -18.00239 -17.72299 -17.18850 -17.09461 -16.70602 -16.58233 -16.27956 -15.72568 -15.51850 -15.05254 -14.77886 -14.73263 -14.65121 -14.15822 -14.05893 -13.91419 -13.61554 -13.36049 -13.22060 -12.94326 -12.79324 -12.69748 -12.42124 -12.30723 -12.16359 -11.87863 -11.72272 -11.45322 -11.24946 -11.13913 -10.97919 -10.79700 -10.04430 -9.67027 -9.20344 -8.40186 -5.36987 -0.18580 1.12553 1.40448 1.59217 1.68360 1.84440 1.86138 1.96671 2.69874 2.88773 3.22548 3.34843 3.57687 3.70235 3.74240 3.79831 3.84042 3.97098 4.12606 4.18437 4.21465 4.30552 4.34185 4.46294 4.50250 4.54939 4.59772 4.60775 4.73573 4.78206 4.82076 4.85472 4.91471 5.01552 5.11654 5.18911 5.30477 5.33273 5.58325 5.80131 6.03192 6.21180 6.48268 6.78925 7.04031 7.93392 8.04290 9.11085 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.008703 B = 0.005628 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.465600 B = 4974.171518 C = 7760.248235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.136 3.864 4 C -0.002 4.002 5 C -0.186 4.186 6 C -0.117 4.117 7 C -0.097 4.097 8 C 0.610 3.390 9 O -0.549 6.549 10 N -0.600 5.600 11 C 0.092 3.908 12 C 0.175 3.825 13 H 0.066 0.934 14 N -0.733 5.733 15 C -0.336 4.336 16 H 0.068 0.932 17 C -0.096 4.096 18 N -0.972 5.972 19 Si 1.124 2.876 20 H -0.294 1.294 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.126 4.126 24 C 0.137 3.863 25 H 0.082 0.918 26 C -0.153 4.153 27 O -0.169 6.169 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.194 0.806 34 H 0.177 0.823 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.364 0.636 38 H 0.245 0.755 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 2.675 -17.864 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.060 3.940 4 C -0.055 4.055 5 C -0.204 4.204 6 C -0.137 4.137 7 C -0.149 4.149 8 C 0.400 3.600 9 O -0.430 6.430 10 N -0.332 5.332 11 C -0.034 4.034 12 C 0.064 3.936 13 H 0.084 0.916 14 N -0.374 5.374 15 C -0.467 4.467 16 H 0.086 0.914 17 C -0.288 4.288 18 N -0.619 5.619 19 Si 0.948 3.052 20 H -0.220 1.220 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.164 4.164 24 C 0.034 3.966 25 H 0.100 0.900 26 C -0.211 4.211 27 O -0.066 6.066 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.211 0.789 34 H 0.195 0.805 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.197 0.803 38 H 0.056 0.944 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.049 2.892 -17.044 17.320 hybrid contribution 1.190 -0.634 -0.643 1.494 sum 2.239 2.259 -17.687 17.971 Atomic orbital electron populations 1.23007 0.78166 1.04252 1.01596 1.87921 1.22413 1.27392 1.95799 1.21000 0.82580 0.85947 1.04451 1.23060 0.94205 1.03701 0.84486 1.21977 0.91100 1.06477 1.00880 1.22242 0.99924 0.99667 0.91906 1.22098 0.82185 1.15346 0.95272 1.16416 0.86228 0.76973 0.80392 1.90801 1.22935 1.53377 1.75886 1.48527 1.09952 1.70281 1.04430 1.23179 0.84091 1.00544 0.95555 1.21343 0.88270 0.97356 0.86665 0.91634 1.42426 1.26039 1.23117 1.45771 1.20352 1.02891 1.02005 1.21414 0.91414 1.27133 1.04406 1.01241 0.96029 1.70993 1.33376 1.12248 1.45319 0.82687 0.72921 0.73235 0.76312 1.21969 1.20266 1.20331 1.22974 0.96025 1.02030 0.95413 1.21704 0.88256 1.00304 0.86301 0.89965 1.22081 0.98956 0.96863 1.03199 1.84211 1.16513 1.70092 1.35745 0.93592 0.91075 0.88539 0.91314 0.85644 0.78857 0.80550 0.93130 0.91366 0.80266 0.94410 0.88064 0.90638 0.88964 0.92368 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.07 10.69 -148.98 -1.59 -11.66 16 3 C 0.14 2.81 6.46 71.24 0.46 3.27 16 4 C 0.00 -0.06 6.94 24.97 0.17 0.11 16 5 C -0.19 -4.06 10.77 22.07 0.24 -3.82 16 6 C -0.12 -3.05 10.62 22.39 0.24 -2.81 16 7 C -0.10 -3.16 6.93 24.07 0.17 -2.99 16 8 C 0.61 21.46 7.60 86.44 0.66 22.12 16 9 O -0.55 -20.44 15.77 -4.34 -0.07 -20.51 16 10 N -0.60 -20.55 3.08 -792.73 -2.44 -22.99 16 11 C 0.09 3.50 5.86 86.86 0.51 4.01 16 12 C 0.17 6.78 3.71 46.39 0.17 6.96 16 13 H 0.07 2.61 8.09 -2.39 -0.02 2.59 16 14 N -0.73 -35.51 5.24 -316.36 -1.66 -37.17 16 15 C -0.34 -18.17 9.96 84.03 0.84 -17.33 16 16 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 17 C -0.10 -5.42 5.50 84.86 0.47 -4.95 16 18 N -0.97 -59.29 13.70 21.65 0.30 -58.99 16 19 Si 1.12 50.25 29.92 68.60 2.05 52.30 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 23 C -0.13 -3.89 6.14 31.78 0.20 -3.70 16 24 C 0.14 4.05 3.49 45.34 0.16 4.21 16 25 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 26 C -0.15 -3.99 9.05 71.98 0.65 -3.34 16 27 O -0.17 -5.64 7.86 -5.08 -0.04 -5.68 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.13 1.52 8.14 -2.38 -0.02 1.51 16 33 H 0.19 2.64 8.06 -2.91 -0.02 2.61 16 34 H 0.18 3.91 8.06 -2.91 -0.02 3.88 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.07 2.71 6.23 -2.39 -0.01 2.70 16 37 H 0.36 18.39 6.60 -92.71 -0.61 17.78 16 38 H 0.25 14.89 6.77 -92.71 -0.63 14.26 16 39 H 0.10 2.78 7.83 -2.39 -0.02 2.76 16 40 H 0.07 2.35 8.00 -2.39 -0.02 2.34 16 41 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 1.66 6.77 -2.39 -0.02 1.65 16 43 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -71.25 359.14 3.27 -67.98 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.55 Total: 33.31 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 6.17 Total: 3.40 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -3.80 Total: -119.15 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -1.70 Total: -37.85 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.05 Total: 52.30 kcal Total: -71.25 3.27 -67.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989141879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.878 kcal (2) G-P(sol) polarization free energy of solvation -71.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds