Wall clock time and date at job start Tue Mar 31 2020 09:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47008 * 2 1 4 4 C 1.50699 * 109.47358 * 239.99909 * 2 1 3 5 5 O 1.21281 * 120.00183 * 249.56146 * 4 2 1 6 6 N 1.34782 * 119.99694 * 69.56576 * 4 2 1 7 7 C 1.48213 * 119.97206 * 356.63889 * 6 4 2 8 8 C 1.47140 * 110.33996 * 102.46609 * 7 6 4 9 9 C 1.53798 * 111.84235 * 58.29604 * 8 7 6 10 10 N 1.43461 * 107.96629 * 281.67221 * 9 8 7 11 11 C 1.36935 * 118.93984 * 273.62704 * 10 9 8 12 12 H 1.08002 * 119.99815 * 26.35190 * 11 10 9 13 13 C 1.38811 * 120.00178 * 206.35198 * 11 10 9 14 14 N 1.31615 * 119.99745 * 15.24755 * 13 11 10 15 15 Si 1.86793 * 120.00080 * 195.24756 * 13 11 10 16 16 H 1.48506 * 109.47552 * 59.99965 * 15 13 11 17 17 H 1.48501 * 109.47443 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47294 * 300.00086 * 15 13 11 19 19 C 1.48859 * 122.12072 * 93.64268 * 10 9 8 20 20 C 1.43616 * 119.96974 * 176.36727 * 6 4 2 21 21 C 1.53003 * 109.47163 * 120.00141 * 2 1 3 22 22 F 1.39893 * 109.47091 * 60.00091 * 21 2 1 23 23 F 1.39899 * 109.47202 * 180.02562 * 21 2 1 24 24 F 1.39904 * 109.47063 * 299.99819 * 21 2 1 25 25 H 1.09004 * 109.47082 * 71.16604 * 1 2 3 26 26 H 1.09007 * 109.47272 * 191.16479 * 1 2 3 27 27 H 1.08999 * 109.47224 * 311.16256 * 1 2 3 28 28 H 1.09010 * 109.46832 * 81.09298 * 3 2 1 29 29 H 1.09004 * 109.47175 * 201.08853 * 3 2 1 30 30 H 1.08995 * 109.47401 * 321.09045 * 3 2 1 31 31 H 1.09001 * 109.32493 * 222.73278 * 7 6 4 32 32 H 1.08998 * 109.32705 * 342.37948 * 7 6 4 33 33 H 1.09003 * 109.00466 * 178.90386 * 8 7 6 34 34 H 1.08996 * 109.01113 * 297.76344 * 8 7 6 35 35 H 1.09006 * 109.75804 * 41.28996 * 9 8 7 36 36 H 1.09000 * 109.76473 * 162.00150 * 9 8 7 37 37 H 0.97002 * 119.99671 * 180.02562 * 14 13 11 38 38 H 1.09010 * 109.47499 * 80.58587 * 19 10 9 39 39 H 1.08999 * 109.48020 * 200.60301 * 19 10 9 40 40 H 1.09000 * 108.87679 * 31.46565 * 20 6 4 41 41 H 1.08994 * 108.87677 * 149.90804 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.5803 -1.7875 -1.1276 6 7 1.8727 -0.1487 -2.4452 7 6 1.1376 1.1313 -2.5783 8 6 2.0807 2.2466 -2.7562 9 6 2.9754 2.0479 -3.9912 10 7 4.0055 1.1112 -3.6453 11 6 5.1509 1.5741 -3.0546 12 1 5.1303 2.4874 -2.4785 13 6 6.3385 0.8695 -3.1964 14 7 6.4463 -0.0587 -4.1232 15 14 7.7835 1.2388 -2.0717 16 1 7.3880 0.9952 -0.6612 17 1 8.9245 0.3568 -2.4258 18 1 8.1871 2.6586 -2.2343 19 6 3.8694 -0.3477 -3.9080 20 6 2.4202 -0.7882 -3.6088 21 6 2.0399 -0.7213 1.2492 22 9 1.5736 -2.0402 1.2492 23 9 3.4389 -0.7208 1.2495 24 9 1.5736 -0.0618 2.3916 25 1 -0.3633 0.3318 -0.9727 26 1 -0.3634 -1.0083 0.1990 27 1 -0.3633 0.6764 0.7737 28 1 2.0109 1.8381 1.0154 29 1 3.0650 1.4655 -0.3698 30 1 1.4071 2.0516 -0.6454 31 1 0.4745 1.0784 -3.4418 32 1 0.5459 1.3027 -1.6791 33 1 1.5175 3.1728 -2.8712 34 1 2.7116 2.3228 -1.8707 35 1 2.3820 1.6550 -4.8168 36 1 3.4229 2.9992 -4.2792 37 1 7.2761 -0.5513 -4.2219 38 1 4.1049 -0.5524 -4.9525 39 1 4.5567 -0.8983 -3.2658 40 1 2.4091 -1.8674 -3.4562 41 1 1.7955 -0.5492 -4.4693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989527636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:04 Heat of formation + Delta-G solvation = -135.586793 kcal Electronic energy + Delta-G solvation = -29017.362710 eV Core-core repulsion = 24712.362421 eV Total energy + Delta-G solvation = -4305.000289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.89811 -47.40947 -47.25318 -40.49868 -37.14273 -35.74078 -34.14082 -32.39989 -30.89440 -27.87741 -27.61023 -26.34251 -25.32320 -23.97576 -22.93162 -21.38254 -19.75894 -19.12417 -18.15409 -18.08543 -17.09666 -16.79875 -16.15586 -15.79340 -15.20642 -14.64033 -14.35694 -14.20905 -14.13651 -13.85818 -13.72874 -13.65356 -13.50479 -13.45805 -13.40806 -13.05789 -12.85378 -12.51361 -12.35607 -12.18062 -12.05514 -11.59867 -11.50430 -11.30528 -10.96434 -10.83296 -10.71368 -10.51826 -10.25184 -10.17723 -9.79491 -9.72723 -9.37905 -8.45174 -8.13552 -6.68287 -5.77001 -3.20826 2.67669 2.92023 3.32513 3.40252 3.46967 3.49272 3.80672 4.14565 4.16808 4.52831 4.61350 4.76654 4.90562 4.99713 5.26663 5.34155 5.39037 5.46606 5.50876 5.58240 5.59197 5.71416 5.77863 5.89450 6.09562 6.14183 6.16553 6.34346 6.38694 6.40554 6.73401 6.89493 6.93656 7.39426 7.58003 7.74632 7.83153 8.45642 8.48322 9.22123 9.90377 10.35988 11.30970 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.006825 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.337901 B = 4101.352526 C = 4844.223231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.128 4.128 3 C -0.166 4.166 4 C 0.530 3.470 5 O -0.527 6.527 6 N -0.572 5.572 7 C 0.101 3.899 8 C -0.192 4.192 9 C 0.164 3.836 10 N -0.589 5.589 11 C -0.261 4.261 12 H 0.063 0.937 13 C 0.010 3.990 14 N -0.903 5.903 15 Si 0.897 3.103 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.167 3.833 20 C 0.090 3.910 21 C 0.474 3.526 22 F -0.173 7.173 23 F -0.169 7.169 24 F -0.185 7.185 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.032 0.968 36 H 0.046 0.954 37 H 0.254 0.746 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.166 2.963 6.030 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.133 4.133 3 C -0.222 4.222 4 C 0.315 3.685 5 O -0.403 6.403 6 N -0.302 5.302 7 C -0.021 4.021 8 C -0.233 4.233 9 C 0.035 3.965 10 N -0.311 5.311 11 C -0.391 4.391 12 H 0.081 0.919 13 C -0.190 4.190 14 N -0.547 5.547 15 Si 0.727 3.273 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.210 1.210 19 C 0.041 3.959 20 C -0.035 4.035 21 C 0.419 3.581 22 F -0.154 7.154 23 F -0.150 7.150 24 F -0.167 7.167 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.707 2.232 6.006 16.042 hybrid contribution 1.011 0.124 0.790 1.289 sum -13.696 2.356 6.796 15.470 Atomic orbital electron populations 1.22140 0.89807 1.04409 1.04816 1.22015 1.00091 0.99269 0.91932 1.22664 1.04569 0.90802 1.04209 1.19481 0.79676 0.85396 0.83977 1.90768 1.42797 1.21150 1.85574 1.47135 1.53883 1.23018 1.06203 1.21327 0.94473 0.84031 1.02225 1.22323 0.99652 0.96298 1.05014 1.20222 0.90083 0.93886 0.92300 1.43660 1.15948 1.01057 1.70432 1.19034 0.86071 1.08794 1.25176 0.91927 1.24993 0.97265 0.99352 0.97341 1.69990 1.26251 1.26566 1.31845 0.86462 0.82270 0.77495 0.81104 1.20908 1.21601 1.20962 1.21768 0.90268 0.84199 0.99635 1.21954 0.98254 0.97634 0.85634 1.19808 0.76249 0.77583 0.84415 1.93179 1.88324 1.37292 1.96643 1.93242 1.28874 1.96285 1.96614 1.93137 1.88689 1.80948 1.53901 0.89151 0.90754 0.90084 0.91016 0.88990 0.88343 0.91379 0.89532 0.92328 0.89869 0.94954 0.93567 0.93565 0.94055 0.90583 0.90897 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 7.83 37.15 0.29 -1.31 16 2 C -0.13 -1.86 0.32 -155.66 -0.05 -1.91 16 3 C -0.17 -2.19 6.45 37.16 0.24 -1.95 16 4 C 0.53 9.71 6.10 -10.98 -0.07 9.64 16 5 O -0.53 -11.84 14.41 5.56 0.08 -11.76 16 6 N -0.57 -9.65 2.46 -176.97 -0.44 -10.08 16 7 C 0.10 1.30 4.46 -5.91 -0.03 1.27 16 8 C -0.19 -2.79 4.71 -29.13 -0.14 -2.93 16 9 C 0.16 3.05 5.63 -5.24 -0.03 3.02 16 10 N -0.59 -13.79 2.53 -172.29 -0.44 -14.23 16 11 C -0.26 -6.93 9.25 -15.06 -0.14 -7.07 16 12 H 0.06 1.63 7.87 -52.49 -0.41 1.22 16 13 C 0.01 0.27 4.92 -17.43 -0.09 0.18 16 14 N -0.90 -26.24 11.04 55.49 0.61 -25.62 16 15 Si 0.90 22.25 29.58 -169.99 -5.03 17.22 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.17 3.91 5.17 -2.01 -0.01 3.90 16 20 C 0.09 1.67 5.24 -4.84 -0.03 1.64 16 21 C 0.47 7.74 1.95 37.16 0.07 7.81 16 22 F -0.17 -2.98 15.49 2.25 0.03 -2.95 16 23 F -0.17 -3.30 16.35 2.25 0.04 -3.26 16 24 F -0.19 -2.62 16.21 2.25 0.04 -2.58 16 25 H 0.09 0.80 5.39 -51.93 -0.28 0.52 16 26 H 0.07 0.79 7.51 -51.92 -0.39 0.40 16 27 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 28 H 0.07 0.83 7.33 -51.92 -0.38 0.45 16 29 H 0.09 1.55 6.76 -51.93 -0.35 1.20 16 30 H 0.10 1.06 4.10 -51.93 -0.21 0.85 16 31 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 32 H 0.09 0.89 2.58 -51.93 -0.13 0.75 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.37 4.62 -51.93 -0.24 1.13 16 35 H 0.03 0.56 7.58 -51.93 -0.39 0.17 16 36 H 0.05 0.89 8.02 -51.93 -0.42 0.47 16 37 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.04 1.03 7.98 -51.92 -0.41 0.62 16 39 H 0.08 2.11 6.63 -51.93 -0.34 1.77 16 40 H 0.07 1.41 7.32 -51.93 -0.38 1.03 16 41 H 0.06 0.95 7.73 -51.93 -0.40 0.55 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -31.89 315.43 -5.46 -37.35 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -5.15 Total: -1.14 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 0.03 Total: 12.29 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.26 Total: -49.93 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 9 Polarization: -8.90 SS G_CDS: 0.11 Total: -8.79 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.89 -5.46 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989527636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.235 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds