Wall clock time and date at job start Tue Mar 31 2020 09:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47008 * 2 1 4 4 C 1.50699 * 109.47358 * 239.99909 * 2 1 3 5 5 O 1.21281 * 120.00183 * 249.56146 * 4 2 1 6 6 N 1.34782 * 119.99694 * 69.56576 * 4 2 1 7 7 C 1.48213 * 119.97206 * 356.63889 * 6 4 2 8 8 C 1.47140 * 110.33996 * 102.46609 * 7 6 4 9 9 C 1.53798 * 111.84235 * 58.29604 * 8 7 6 10 10 N 1.43461 * 107.96629 * 281.67221 * 9 8 7 11 11 C 1.36935 * 118.93984 * 273.62704 * 10 9 8 12 12 H 1.08002 * 119.99815 * 26.35190 * 11 10 9 13 13 C 1.38811 * 120.00178 * 206.35198 * 11 10 9 14 14 N 1.31615 * 119.99745 * 15.24755 * 13 11 10 15 15 Si 1.86793 * 120.00080 * 195.24756 * 13 11 10 16 16 H 1.48506 * 109.47552 * 59.99965 * 15 13 11 17 17 H 1.48501 * 109.47443 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47294 * 300.00086 * 15 13 11 19 19 C 1.48859 * 122.12072 * 93.64268 * 10 9 8 20 20 C 1.43616 * 119.96974 * 176.36727 * 6 4 2 21 21 C 1.53003 * 109.47163 * 120.00141 * 2 1 3 22 22 F 1.39893 * 109.47091 * 60.00091 * 21 2 1 23 23 F 1.39899 * 109.47202 * 180.02562 * 21 2 1 24 24 F 1.39904 * 109.47063 * 299.99819 * 21 2 1 25 25 H 1.09004 * 109.47082 * 71.16604 * 1 2 3 26 26 H 1.09007 * 109.47272 * 191.16479 * 1 2 3 27 27 H 1.08999 * 109.47224 * 311.16256 * 1 2 3 28 28 H 1.09010 * 109.46832 * 81.09298 * 3 2 1 29 29 H 1.09004 * 109.47175 * 201.08853 * 3 2 1 30 30 H 1.08995 * 109.47401 * 321.09045 * 3 2 1 31 31 H 1.09001 * 109.32493 * 222.73278 * 7 6 4 32 32 H 1.08998 * 109.32705 * 342.37948 * 7 6 4 33 33 H 1.09003 * 109.00466 * 178.90386 * 8 7 6 34 34 H 1.08996 * 109.01113 * 297.76344 * 8 7 6 35 35 H 1.09006 * 109.75804 * 41.28996 * 9 8 7 36 36 H 1.09000 * 109.76473 * 162.00150 * 9 8 7 37 37 H 0.97002 * 119.99671 * 180.02562 * 14 13 11 38 38 H 1.09010 * 109.47499 * 80.58587 * 19 10 9 39 39 H 1.08999 * 109.48020 * 200.60301 * 19 10 9 40 40 H 1.09000 * 108.87679 * 31.46565 * 20 6 4 41 41 H 1.08994 * 108.87677 * 149.90804 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.5803 -1.7875 -1.1276 6 7 1.8727 -0.1487 -2.4452 7 6 1.1376 1.1313 -2.5783 8 6 2.0807 2.2466 -2.7562 9 6 2.9754 2.0479 -3.9912 10 7 4.0055 1.1112 -3.6453 11 6 5.1509 1.5741 -3.0546 12 1 5.1303 2.4874 -2.4785 13 6 6.3385 0.8695 -3.1964 14 7 6.4463 -0.0587 -4.1232 15 14 7.7835 1.2388 -2.0717 16 1 7.3880 0.9952 -0.6612 17 1 8.9245 0.3568 -2.4258 18 1 8.1871 2.6586 -2.2343 19 6 3.8694 -0.3477 -3.9080 20 6 2.4202 -0.7882 -3.6088 21 6 2.0399 -0.7213 1.2492 22 9 1.5736 -2.0402 1.2492 23 9 3.4389 -0.7208 1.2495 24 9 1.5736 -0.0618 2.3916 25 1 -0.3633 0.3318 -0.9727 26 1 -0.3634 -1.0083 0.1990 27 1 -0.3633 0.6764 0.7737 28 1 2.0109 1.8381 1.0154 29 1 3.0650 1.4655 -0.3698 30 1 1.4071 2.0516 -0.6454 31 1 0.4745 1.0784 -3.4418 32 1 0.5459 1.3027 -1.6791 33 1 1.5175 3.1728 -2.8712 34 1 2.7116 2.3228 -1.8707 35 1 2.3820 1.6550 -4.8168 36 1 3.4229 2.9992 -4.2792 37 1 7.2761 -0.5513 -4.2219 38 1 4.1049 -0.5524 -4.9525 39 1 4.5567 -0.8983 -3.2658 40 1 2.4091 -1.8674 -3.4562 41 1 1.7955 -0.5492 -4.4693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989527636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:03 Heat of formation + Delta-G solvation = -156.181722 kcal Electronic energy + Delta-G solvation = -29018.255773 eV Core-core repulsion = 24712.362421 eV Total energy + Delta-G solvation = -4305.893352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.19089 -48.66517 -48.62863 -41.82630 -38.68854 -37.07338 -35.71026 -33.93617 -32.69524 -29.49948 -28.56167 -27.66059 -26.79474 -25.65330 -24.41523 -22.63004 -21.41084 -20.46200 -19.45124 -19.39925 -18.65673 -18.34855 -17.52336 -17.27437 -16.70498 -16.25904 -15.74460 -15.58367 -15.50727 -15.31607 -15.18206 -15.04439 -14.90328 -14.82828 -14.73227 -14.36737 -14.22870 -13.78952 -13.68010 -13.46097 -13.21520 -13.14608 -12.98881 -12.79980 -12.55653 -12.48064 -12.21729 -12.11133 -11.92195 -11.70715 -11.49839 -11.24979 -10.76327 -10.50813 -9.58932 -8.63312 -7.85838 -5.29386 1.37214 1.37850 1.43695 1.46442 1.62561 2.04656 2.49030 2.58490 2.94915 2.96640 3.29784 3.47951 3.65374 3.73612 3.78032 4.00005 4.26095 4.33635 4.46501 4.49305 4.56095 4.60518 4.63953 4.75605 4.83815 4.87104 4.94478 4.99335 5.12928 5.19870 5.31366 5.33472 5.58964 5.61633 5.70779 5.83776 6.39392 6.40606 7.09391 7.18090 7.96197 8.37615 9.18939 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.006825 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.337901 B = 4101.352526 C = 4844.223231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.160 4.160 4 C 0.517 3.483 5 O -0.582 6.582 6 N -0.571 5.571 7 C 0.093 3.907 8 C -0.181 4.181 9 C 0.153 3.847 10 N -0.602 5.602 11 C -0.250 4.250 12 H 0.067 0.933 13 C -0.051 4.051 14 N -0.935 5.935 15 Si 0.947 3.053 16 H -0.290 1.290 17 H -0.299 1.299 18 H -0.267 1.267 19 C 0.179 3.821 20 C 0.104 3.896 21 C 0.465 3.535 22 F -0.182 7.182 23 F -0.196 7.196 24 F -0.170 7.170 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.130 0.870 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.244 0.756 38 H 0.016 0.984 39 H 0.019 0.981 40 H 0.059 0.941 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.777 5.545 6.654 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 C -0.216 4.216 4 C 0.305 3.695 5 O -0.462 6.462 6 N -0.301 5.301 7 C -0.027 4.027 8 C -0.221 4.221 9 C 0.026 3.974 10 N -0.324 5.324 11 C -0.381 4.381 12 H 0.085 0.915 13 C -0.246 4.246 14 N -0.582 5.582 15 Si 0.777 3.223 16 H -0.217 1.217 17 H -0.225 1.225 18 H -0.193 1.193 19 C 0.053 3.947 20 C -0.022 4.022 21 C 0.411 3.589 22 F -0.164 7.164 23 F -0.178 7.178 24 F -0.151 7.151 25 H 0.132 0.868 26 H 0.088 0.912 27 H 0.131 0.869 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.121 0.879 32 H 0.140 0.860 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.034 0.966 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.376 4.891 6.631 20.139 hybrid contribution 2.085 -0.631 0.598 2.258 sum -16.291 4.261 7.229 18.325 Atomic orbital electron populations 1.22272 0.85860 1.05348 1.07349 1.22080 1.02956 0.98814 0.88634 1.22671 1.02654 0.90266 1.06010 1.20265 0.78807 0.84999 0.85470 1.90742 1.45148 1.23790 1.86529 1.47315 1.53328 1.24276 1.05133 1.21746 0.94226 0.81083 1.05617 1.22135 0.99333 0.99211 1.01460 1.20529 0.89603 0.92283 0.94977 1.43856 1.16317 1.01654 1.70614 1.19366 0.86925 1.08060 1.23729 0.91493 1.25644 0.99725 1.00289 0.98985 1.70142 1.26131 1.28123 1.33797 0.85637 0.79829 0.77828 0.79041 1.21740 1.22541 1.19275 1.21385 0.92409 0.84164 0.96757 1.21592 0.95682 0.97010 0.87894 1.20231 0.75125 0.77654 0.85906 1.93157 1.88226 1.38198 1.96771 1.93188 1.31334 1.96405 1.96824 1.93159 1.88271 1.80456 1.53218 0.86794 0.91162 0.86874 0.89028 0.93127 0.85167 0.87909 0.86006 0.87662 0.91792 0.93129 0.94396 0.94652 0.96613 0.96181 0.92289 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 7.83 71.98 0.56 -1.85 16 2 C -0.12 -3.19 0.32 -52.93 -0.02 -3.21 16 3 C -0.16 -3.70 6.45 71.98 0.46 -3.23 16 4 C 0.52 18.54 6.10 87.66 0.53 19.08 16 5 O -0.58 -27.03 14.41 -3.03 -0.04 -27.07 16 6 N -0.57 -18.01 2.46 -832.21 -2.05 -20.05 16 7 C 0.09 1.88 4.46 84.23 0.38 2.25 16 8 C -0.18 -4.43 4.71 29.04 0.14 -4.29 16 9 C 0.15 5.28 5.63 87.21 0.49 5.77 16 10 N -0.60 -28.19 2.53 -699.00 -1.77 -29.96 16 11 C -0.25 -13.47 9.25 84.03 0.78 -12.69 16 12 H 0.07 3.49 7.87 -2.91 -0.02 3.46 16 13 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 14 N -0.94 -57.25 11.04 21.65 0.24 -57.01 16 15 Si 0.95 47.34 29.58 68.60 2.03 49.37 16 16 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 17 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 C 0.18 8.68 5.17 86.40 0.45 9.13 16 20 C 0.10 3.79 5.24 87.39 0.46 4.25 16 21 C 0.47 14.77 1.95 71.98 0.14 14.91 16 22 F -0.18 -6.26 15.49 44.97 0.70 -5.56 16 23 F -0.20 -7.85 16.35 44.97 0.74 -7.12 16 24 F -0.17 -4.41 16.21 44.97 0.73 -3.68 16 25 H 0.11 1.27 5.39 -2.38 -0.01 1.26 16 26 H 0.07 1.24 7.51 -2.38 -0.02 1.22 16 27 H 0.11 1.14 8.06 -2.39 -0.02 1.12 16 28 H 0.09 1.77 7.33 -2.38 -0.02 1.75 16 29 H 0.05 1.64 6.76 -2.38 -0.02 1.62 16 30 H 0.13 2.08 4.10 -2.39 -0.01 2.07 16 31 H 0.10 1.53 8.06 -2.39 -0.02 1.51 16 32 H 0.12 1.66 2.58 -2.39 -0.01 1.65 16 33 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.89 4.62 -2.39 -0.01 1.87 16 35 H 0.05 1.57 7.58 -2.38 -0.02 1.55 16 36 H 0.04 1.37 8.02 -2.39 -0.02 1.35 16 37 H 0.24 14.83 8.31 -92.71 -0.77 14.05 16 38 H 0.02 0.83 7.98 -2.38 -0.02 0.81 16 39 H 0.02 1.17 6.63 -2.39 -0.02 1.16 16 40 H 0.06 2.33 7.32 -2.39 -0.02 2.31 16 41 H 0.10 2.81 7.73 -2.39 -0.02 2.79 16 Total: -1.00 -76.98 315.43 6.43 -70.55 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: 1.07 Total: 2.96 kcal Atomic # 6 Polarization: 22.79 SS G_CDS: 4.79 Total: 27.58 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -3.58 Total: -107.03 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.04 Total: -27.07 kcal Atomic # 9 Polarization: -18.52 SS G_CDS: 2.16 Total: -16.36 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -76.98 6.43 -70.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989527636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.633 kcal (2) G-P(sol) polarization free energy of solvation -76.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds