Wall clock time and date at job start Tue Mar 31 2020 10:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35369 * 116.99531 * 2 1 4 4 C 1.36100 * 125.57485 * 179.97438 * 3 2 1 5 5 C 1.39911 * 107.17540 * 179.74412 * 4 3 2 6 6 C 1.37833 * 106.67506 * 0.41308 * 5 4 3 7 7 C 1.46132 * 126.02941 * 179.85351 * 6 5 4 8 8 O 1.21771 * 119.99670 * 352.39783 * 7 6 5 9 9 N 1.34772 * 120.00116 * 172.40047 * 7 6 5 10 10 C 1.46930 * 120.62917 * 352.62743 * 9 7 6 11 11 C 1.53194 * 108.77303 * 233.58787 * 10 9 7 12 12 C 1.53038 * 109.31365 * 305.36479 * 11 10 9 13 13 H 1.08998 * 109.44967 * 301.35349 * 12 11 10 14 14 N 1.46503 * 109.46169 * 181.38770 * 12 11 10 15 15 C 1.36936 * 119.99743 * 84.93075 * 14 12 11 16 16 H 1.07998 * 120.00398 * 359.72388 * 15 14 12 17 17 C 1.38812 * 119.99632 * 179.72615 * 15 14 12 18 18 N 1.31614 * 120.00178 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99954 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47068 * 89.99914 * 19 17 15 21 21 H 1.48492 * 109.46987 * 209.99874 * 19 17 15 22 22 H 1.48499 * 109.46764 * 329.99893 * 19 17 15 23 23 C 1.53041 * 109.53872 * 61.36498 * 12 11 10 24 24 C 1.46924 * 120.63206 * 172.60309 * 9 7 6 25 25 H 1.09001 * 109.58324 * 6.63350 * 24 9 7 26 26 C 1.52991 * 109.59035 * 246.20051 * 24 9 7 27 27 O 1.34011 * 125.58189 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47044 * 60.00323 * 1 2 3 29 29 H 1.09003 * 109.46559 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47311 * 299.99980 * 1 2 3 31 31 H 1.08002 * 126.40973 * 0.02562 * 4 3 2 32 32 H 1.07999 * 126.66046 * 180.29900 * 5 4 3 33 33 H 1.08997 * 109.58590 * 353.37244 * 10 9 7 34 34 H 1.08994 * 109.58893 * 113.65640 * 10 9 7 35 35 H 1.08999 * 109.49349 * 185.41322 * 11 10 9 36 36 H 1.08998 * 109.49618 * 65.31562 * 11 10 9 37 37 H 0.96996 * 119.99521 * 264.65582 * 14 12 11 38 38 H 0.97005 * 120.00519 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.49306 * 58.59003 * 23 12 11 40 40 H 1.08998 * 109.49666 * 178.65335 * 23 12 11 41 41 H 1.09003 * 109.47087 * 300.71263 * 26 24 9 42 42 H 1.09002 * 109.47060 * 60.70786 * 26 24 9 43 43 H 1.08997 * 109.47462 * 180.71283 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3893 1.4092 0.0005 5 6 3.5984 2.7926 -0.0057 6 6 2.3520 3.3811 -0.0002 7 6 2.0793 4.8167 -0.0006 8 8 2.9933 5.6101 0.1334 9 7 0.8162 5.2626 -0.1492 10 6 -0.2734 4.3312 -0.4721 11 6 -1.0052 4.8414 -1.7175 12 6 -1.4601 6.2835 -1.4821 13 1 -2.1131 6.3203 -0.6101 14 7 -2.1894 6.7635 -2.6586 15 6 -3.5268 6.5002 -2.7895 16 1 -4.0430 5.9349 -2.0278 17 6 -4.2190 6.9600 -3.9015 18 7 -3.5900 7.6493 -4.8296 19 14 -6.0433 6.6002 -4.0806 20 1 -6.8274 7.6923 -3.4499 21 1 -6.3908 6.5097 -5.5214 22 1 -6.3618 5.3127 -3.4127 23 6 -0.2381 7.1729 -1.2417 24 6 0.5024 6.6892 0.0091 25 1 1.4262 7.2554 0.1285 26 6 -0.3858 6.8857 1.2391 27 8 1.4264 2.3957 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.1529 0.6454 0.0006 32 1 4.5514 3.3007 -0.0115 33 1 0.1385 3.3417 -0.6701 34 1 -0.9681 4.2769 0.3659 35 1 -1.8743 4.2128 -1.9117 36 1 -0.3323 4.8075 -2.5743 37 1 -1.7257 7.2712 -3.3427 38 1 -4.0737 7.9709 -5.6065 39 1 0.4275 7.1170 -2.1031 40 1 -0.5612 8.2039 -1.0979 41 1 -1.3054 6.3130 1.1184 42 1 0.1428 6.5409 2.1278 43 1 -0.6278 7.9429 1.3475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044795879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:09 Heat of formation + Delta-G solvation = -35.202294 kcal Electronic energy + Delta-G solvation = -26255.363146 eV Core-core repulsion = 22496.572596 eV Total energy + Delta-G solvation = -3758.790550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.98172 -40.08768 -38.76913 -37.61732 -34.64265 -33.45811 -32.53956 -31.86039 -29.79950 -29.24067 -27.46928 -27.26627 -24.38173 -23.26937 -23.10069 -22.13334 -21.39996 -20.55090 -19.16683 -18.40188 -17.50788 -17.26673 -17.01667 -16.13019 -15.62408 -15.46781 -14.98680 -14.67495 -14.17869 -14.05828 -13.72472 -13.57028 -13.42864 -13.33294 -13.17593 -12.90488 -12.69064 -12.54450 -12.44453 -11.87710 -11.81279 -11.49656 -11.29794 -10.95265 -10.90706 -10.76501 -10.48187 -10.23175 -10.19990 -10.10242 -9.76331 -9.65204 -8.93606 -8.64787 -8.20412 -7.01171 -5.80887 -3.10273 0.92908 1.98849 2.18508 2.80563 3.08478 3.19806 3.39401 3.44281 3.46433 4.44381 4.53943 4.63571 4.72548 4.80156 5.03272 5.06596 5.18210 5.21734 5.26833 5.32124 5.40536 5.45752 5.55792 5.62343 5.67455 5.75563 5.80350 5.87641 6.03615 6.10907 6.16891 6.23295 6.26926 6.36919 6.44319 6.51024 6.62989 6.86393 6.91123 7.01344 7.42326 7.64373 8.07643 8.37212 9.48473 10.06073 10.40857 11.41623 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.003852 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.397416 B = 7266.347013 C = 8464.212178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.264 6.264 3 C 0.204 3.796 4 C -0.242 4.242 5 C -0.085 4.085 6 C -0.094 4.094 7 C 0.605 3.395 8 O -0.531 6.531 9 N -0.592 5.592 10 C 0.099 3.901 11 C -0.149 4.149 12 C 0.179 3.821 13 H 0.051 0.949 14 N -0.724 5.724 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.134 4.134 24 C 0.142 3.858 25 H 0.099 0.901 26 C -0.161 4.161 27 O -0.179 6.179 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.695 -12.671 12.442 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.178 6.178 3 C 0.108 3.892 4 C -0.262 4.262 5 C -0.106 4.106 6 C -0.144 4.144 7 C 0.393 3.607 8 O -0.411 6.411 9 N -0.324 5.324 10 C -0.024 4.024 11 C -0.191 4.191 12 C 0.069 3.931 13 H 0.069 0.931 14 N -0.364 5.364 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.173 4.173 24 C 0.039 3.961 25 H 0.117 0.883 26 C -0.219 4.219 27 O -0.080 6.080 28 H 0.086 0.914 29 H 0.129 0.871 30 H 0.083 0.917 31 H 0.179 0.821 32 H 0.184 0.816 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.709 -12.405 12.503 20.613 hybrid contribution -1.197 -0.264 -0.527 1.334 sum 9.513 -12.669 11.977 19.861 Atomic orbital electron populations 1.23221 0.76409 1.05056 1.02998 1.86389 1.23283 1.19014 1.89107 1.21038 0.89819 0.78763 0.99569 1.20751 0.92072 0.96846 1.16525 1.21954 0.97744 0.92513 0.98341 1.21997 0.86920 0.87422 1.18098 1.16493 0.83049 0.83975 0.77137 1.90867 1.44038 1.53905 1.52253 1.48121 1.06977 1.09252 1.68032 1.22217 0.88924 0.92567 0.98655 1.22681 0.99776 1.00909 0.95697 1.20199 0.91144 0.90197 0.91598 0.93089 1.42433 1.07182 1.65008 1.21776 1.19216 0.85310 1.28692 1.03986 0.91218 1.24742 0.98047 1.00773 0.97237 1.69659 1.35291 1.41575 1.11423 0.86220 0.85436 0.77792 0.76900 1.21695 1.21782 1.20803 1.22223 0.97915 1.00604 0.96542 1.21268 0.99359 0.79883 0.95552 0.88346 1.22152 1.00212 1.02717 0.96806 1.84270 1.36793 1.14088 1.72812 0.91445 0.87150 0.91702 0.82102 0.81629 0.89095 0.91471 0.90659 0.92176 0.78245 0.93463 0.91684 0.90337 0.91618 0.92831 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.74 101.05 1.09 1.21 16 2 O -0.26 -2.60 10.55 -41.03 -0.43 -3.04 16 3 C 0.20 2.31 7.86 29.96 0.24 2.55 16 4 C -0.24 -2.56 10.89 -39.72 -0.43 -2.99 16 5 C -0.08 -1.00 10.67 -39.10 -0.42 -1.42 16 6 C -0.09 -1.29 6.79 -36.56 -0.25 -1.54 16 7 C 0.60 9.39 7.63 -13.10 -0.10 9.29 16 8 O -0.53 -9.39 16.31 5.13 0.08 -9.31 16 9 N -0.59 -8.74 2.68 -166.95 -0.45 -9.19 16 10 C 0.10 1.38 5.68 -3.71 -0.02 1.36 16 11 C -0.15 -2.54 5.66 -26.61 -0.15 -2.69 16 12 C 0.18 3.37 2.52 -67.89 -0.17 3.20 16 13 H 0.05 0.97 6.44 -51.93 -0.33 0.63 16 14 N -0.72 -17.57 5.12 -53.39 -0.27 -17.84 16 15 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 19 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.13 -2.22 5.02 -26.61 -0.13 -2.35 16 24 C 0.14 2.07 3.22 -67.60 -0.22 1.85 16 25 H 0.10 1.47 7.00 -51.93 -0.36 1.11 16 26 C -0.16 -2.03 9.02 37.15 0.34 -1.69 16 27 O -0.18 -2.22 6.72 -19.26 -0.13 -2.35 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.09 1.21 4.23 -53.13 -0.22 0.98 16 34 H 0.07 0.86 7.49 -51.93 -0.39 0.47 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.06 0.85 5.72 -51.93 -0.30 0.55 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -31.53 350.66 -6.82 -38.35 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.12 Total: 8.52 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -0.48 Total: -0.27 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.00 Total: -54.03 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.48 Total: -14.69 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.53 -6.82 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044795879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.144 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds