Wall clock time and date at job start Tue Mar 31 2020 10:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35369 * 116.99531 * 2 1 4 4 C 1.36100 * 125.57485 * 179.97438 * 3 2 1 5 5 C 1.39911 * 107.17540 * 179.74412 * 4 3 2 6 6 C 1.37833 * 106.67506 * 0.41308 * 5 4 3 7 7 C 1.46132 * 126.02941 * 179.85351 * 6 5 4 8 8 O 1.21771 * 119.99670 * 352.39783 * 7 6 5 9 9 N 1.34772 * 120.00116 * 172.40047 * 7 6 5 10 10 C 1.46930 * 120.62917 * 352.62743 * 9 7 6 11 11 C 1.53194 * 108.77303 * 233.58787 * 10 9 7 12 12 C 1.53038 * 109.31365 * 305.36479 * 11 10 9 13 13 H 1.08998 * 109.44967 * 301.35349 * 12 11 10 14 14 N 1.46503 * 109.46169 * 181.38770 * 12 11 10 15 15 C 1.36936 * 119.99743 * 84.93075 * 14 12 11 16 16 H 1.07998 * 120.00398 * 359.72388 * 15 14 12 17 17 C 1.38812 * 119.99632 * 179.72615 * 15 14 12 18 18 N 1.31614 * 120.00178 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99954 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47068 * 89.99914 * 19 17 15 21 21 H 1.48492 * 109.46987 * 209.99874 * 19 17 15 22 22 H 1.48499 * 109.46764 * 329.99893 * 19 17 15 23 23 C 1.53041 * 109.53872 * 61.36498 * 12 11 10 24 24 C 1.46924 * 120.63206 * 172.60309 * 9 7 6 25 25 H 1.09001 * 109.58324 * 6.63350 * 24 9 7 26 26 C 1.52991 * 109.59035 * 246.20051 * 24 9 7 27 27 O 1.34011 * 125.58189 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47044 * 60.00323 * 1 2 3 29 29 H 1.09003 * 109.46559 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47311 * 299.99980 * 1 2 3 31 31 H 1.08002 * 126.40973 * 0.02562 * 4 3 2 32 32 H 1.07999 * 126.66046 * 180.29900 * 5 4 3 33 33 H 1.08997 * 109.58590 * 353.37244 * 10 9 7 34 34 H 1.08994 * 109.58893 * 113.65640 * 10 9 7 35 35 H 1.08999 * 109.49349 * 185.41322 * 11 10 9 36 36 H 1.08998 * 109.49618 * 65.31562 * 11 10 9 37 37 H 0.96996 * 119.99521 * 264.65582 * 14 12 11 38 38 H 0.97005 * 120.00519 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.49306 * 58.59003 * 23 12 11 40 40 H 1.08998 * 109.49666 * 178.65335 * 23 12 11 41 41 H 1.09003 * 109.47087 * 300.71263 * 26 24 9 42 42 H 1.09002 * 109.47060 * 60.70786 * 26 24 9 43 43 H 1.08997 * 109.47462 * 180.71283 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3893 1.4092 0.0005 5 6 3.5984 2.7926 -0.0057 6 6 2.3520 3.3811 -0.0002 7 6 2.0793 4.8167 -0.0006 8 8 2.9933 5.6101 0.1334 9 7 0.8162 5.2626 -0.1492 10 6 -0.2734 4.3312 -0.4721 11 6 -1.0052 4.8414 -1.7175 12 6 -1.4601 6.2835 -1.4821 13 1 -2.1131 6.3203 -0.6101 14 7 -2.1894 6.7635 -2.6586 15 6 -3.5268 6.5002 -2.7895 16 1 -4.0430 5.9349 -2.0278 17 6 -4.2190 6.9600 -3.9015 18 7 -3.5900 7.6493 -4.8296 19 14 -6.0433 6.6002 -4.0806 20 1 -6.8274 7.6923 -3.4499 21 1 -6.3908 6.5097 -5.5214 22 1 -6.3618 5.3127 -3.4127 23 6 -0.2381 7.1729 -1.2417 24 6 0.5024 6.6892 0.0091 25 1 1.4262 7.2554 0.1285 26 6 -0.3858 6.8857 1.2391 27 8 1.4264 2.3957 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.1529 0.6454 0.0006 32 1 4.5514 3.3007 -0.0115 33 1 0.1385 3.3417 -0.6701 34 1 -0.9681 4.2769 0.3659 35 1 -1.8743 4.2128 -1.9117 36 1 -0.3323 4.8075 -2.5743 37 1 -1.7257 7.2712 -3.3427 38 1 -4.0737 7.9709 -5.6065 39 1 0.4275 7.1170 -2.1031 40 1 -0.5612 8.2039 -1.0979 41 1 -1.3054 6.3130 1.1184 42 1 0.1428 6.5409 2.1278 43 1 -0.6278 7.9429 1.3475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044795879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:09 Heat of formation + Delta-G solvation = -54.801901 kcal Electronic energy + Delta-G solvation = -26256.213049 eV Core-core repulsion = 22496.572596 eV Total energy + Delta-G solvation = -3759.640452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.88979 -41.29374 -39.55613 -38.93653 -36.31305 -34.44076 -33.88580 -33.45539 -31.21405 -30.40118 -28.67920 -28.08941 -26.02631 -24.65982 -24.31318 -23.04213 -22.73796 -21.66269 -20.26977 -19.52926 -19.01295 -18.50136 -18.15964 -17.33728 -16.74144 -16.49873 -16.28485 -15.81796 -15.58737 -15.35103 -15.25857 -14.96431 -14.68398 -14.32523 -14.26967 -14.06717 -13.93689 -13.82041 -13.12627 -13.02046 -12.95392 -12.85653 -12.68081 -12.50646 -12.46436 -12.17692 -12.09381 -11.94912 -11.70623 -11.33437 -11.13847 -11.09256 -10.86121 -9.85115 -9.12677 -9.01282 -7.92804 -5.21918 -0.05977 1.08554 1.30720 1.48467 1.49807 1.57890 1.81971 2.04983 2.22779 2.57016 3.40615 3.40726 3.72228 3.76906 3.85740 3.99228 4.06057 4.20338 4.22771 4.27302 4.27962 4.36971 4.51305 4.51787 4.53406 4.65296 4.69435 4.78912 4.83209 4.85105 4.98801 5.01222 5.03656 5.19937 5.26443 5.27886 5.39577 5.51501 5.53402 5.61061 6.09045 6.25989 6.28647 6.90631 7.34610 8.09753 8.33253 9.30913 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.003852 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.397416 B = 7266.347013 C = 8464.212178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.266 6.266 3 C 0.207 3.793 4 C -0.242 4.242 5 C -0.074 4.074 6 C -0.126 4.126 7 C 0.603 3.397 8 O -0.561 6.561 9 N -0.595 5.595 10 C 0.110 3.890 11 C -0.139 4.139 12 C 0.176 3.824 13 H 0.058 0.942 14 N -0.738 5.738 15 C -0.236 4.236 16 H 0.080 0.920 17 C -0.076 4.076 18 N -0.972 5.972 19 Si 0.970 3.030 20 H -0.288 1.288 21 H -0.300 1.300 22 H -0.266 1.266 23 C -0.124 4.124 24 C 0.146 3.854 25 H 0.095 0.905 26 C -0.154 4.154 27 O -0.183 6.183 28 H 0.063 0.937 29 H 0.138 0.862 30 H 0.070 0.930 31 H 0.187 0.813 32 H 0.177 0.823 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.370 0.630 38 H 0.249 0.751 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.512 -14.706 14.190 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.180 6.180 3 C 0.110 3.890 4 C -0.262 4.262 5 C -0.094 4.094 6 C -0.176 4.176 7 C 0.394 3.606 8 O -0.443 6.443 9 N -0.326 5.326 10 C -0.012 4.012 11 C -0.180 4.180 12 C 0.067 3.933 13 H 0.076 0.924 14 N -0.377 5.377 15 C -0.367 4.367 16 H 0.098 0.902 17 C -0.268 4.268 18 N -0.623 5.623 19 Si 0.799 3.201 20 H -0.216 1.216 21 H -0.227 1.227 22 H -0.191 1.191 23 C -0.163 4.163 24 C 0.043 3.957 25 H 0.113 0.887 26 C -0.212 4.212 27 O -0.084 6.084 28 H 0.082 0.918 29 H 0.156 0.844 30 H 0.089 0.911 31 H 0.204 0.796 32 H 0.195 0.805 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.201 0.799 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.523 -14.481 14.306 22.915 hybrid contribution -1.077 0.256 -1.029 1.511 sum 9.446 -14.225 13.277 21.630 Atomic orbital electron populations 1.23508 0.74840 1.07020 1.03096 1.86412 1.24877 1.18030 1.88691 1.21355 0.90324 0.78800 0.98505 1.21078 0.92478 0.96787 1.15819 1.22240 0.97651 0.93185 0.96361 1.21692 0.87784 0.86867 1.21242 1.16701 0.82686 0.84754 0.76475 1.90839 1.44711 1.54976 1.53760 1.48167 1.07122 1.09310 1.67957 1.22145 0.88791 0.92719 0.97579 1.22464 0.99403 0.99427 0.96678 1.20415 0.91623 0.91441 0.89772 0.92449 1.42664 1.06886 1.65161 1.22954 1.19632 0.86406 1.27100 1.03588 0.90190 1.25539 1.02225 1.01625 0.97427 1.69826 1.36772 1.43622 1.12082 0.85186 0.80505 0.78131 0.76230 1.21560 1.22677 1.19089 1.22094 0.96802 1.00272 0.97161 1.21216 0.99264 0.79967 0.95226 0.88717 1.22099 0.99598 1.03497 0.95975 1.84174 1.36787 1.14325 1.73162 0.91792 0.84378 0.91137 0.79593 0.80518 0.87937 0.89537 0.91316 0.94067 0.79887 0.94188 0.93328 0.90402 0.91756 0.91732 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 10.74 113.37 1.22 1.32 16 2 O -0.27 -4.57 10.55 -64.39 -0.68 -5.25 16 3 C 0.21 4.21 7.86 67.32 0.53 4.74 16 4 C -0.24 -4.52 10.89 22.18 0.24 -4.28 16 5 C -0.07 -1.62 10.67 22.58 0.24 -1.37 16 6 C -0.13 -3.29 6.79 24.22 0.16 -3.13 16 7 C 0.60 18.38 7.63 86.29 0.66 19.04 16 8 O -0.56 -19.78 16.31 -4.58 -0.07 -19.85 16 9 N -0.59 -17.04 2.68 -800.29 -2.14 -19.18 16 10 C 0.11 2.91 5.68 86.36 0.49 3.40 16 11 C -0.14 -4.66 5.66 30.67 0.17 -4.49 16 12 C 0.18 6.58 2.52 45.02 0.11 6.70 16 13 H 0.06 2.10 6.44 -2.39 -0.02 2.09 16 14 N -0.74 -36.25 5.12 -322.81 -1.65 -37.90 16 15 C -0.24 -12.59 9.93 84.03 0.83 -11.76 16 16 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 17 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 18 N -0.97 -59.16 13.06 21.65 0.28 -58.88 16 19 Si 0.97 45.05 29.55 68.60 2.03 47.08 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 21 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 C -0.12 -4.14 5.02 30.67 0.15 -3.99 16 24 C 0.15 4.14 3.22 44.97 0.14 4.29 16 25 H 0.09 2.81 7.00 -2.39 -0.02 2.79 16 26 C -0.15 -3.59 9.02 71.98 0.65 -2.94 16 27 O -0.18 -4.22 6.72 13.50 0.09 -4.13 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.19 2.43 8.06 -2.91 -0.02 2.40 16 32 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.10 2.56 4.23 -21.33 -0.09 2.47 16 34 H 0.09 2.00 7.49 -2.39 -0.02 1.98 16 35 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.37 20.00 7.80 -92.71 -0.72 19.28 16 38 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.06 1.52 5.72 -2.39 -0.01 1.51 16 42 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -67.97 350.66 4.16 -63.82 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.23 Total: 30.59 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 6.08 Total: 3.71 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -3.52 Total: -115.96 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.66 Total: -29.23 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -67.97 4.16 -63.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044795879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.016 kcal (2) G-P(sol) polarization free energy of solvation -67.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds