Wall clock time and date at job start Tue Mar 31 2020 10:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35367 * 117.00300 * 2 1 4 4 C 1.36094 * 125.57897 * 180.02562 * 3 2 1 5 5 C 1.39904 * 107.17615 * 179.97438 * 4 3 2 6 6 C 1.37827 * 106.67946 * 359.97438 * 5 4 3 7 7 C 1.46131 * 126.03358 * 180.02562 * 6 5 4 8 8 O 1.21768 * 119.99693 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99822 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99642 * 180.02562 * 9 7 6 11 11 H 1.08993 * 109.52728 * 34.91435 * 10 9 7 12 12 C 1.53040 * 109.49753 * 155.00140 * 10 9 7 13 13 C 1.53041 * 109.53557 * 181.31236 * 12 10 9 14 14 C 1.53191 * 109.31394 * 298.63509 * 13 12 10 15 15 H 1.09001 * 109.58336 * 294.84752 * 14 13 12 16 16 C 1.53000 * 109.58469 * 174.56870 * 14 13 12 17 17 N 1.46921 * 108.77529 * 54.63545 * 14 13 12 18 18 C 1.36942 * 120.62940 * 126.36983 * 17 14 13 19 19 H 1.08001 * 119.99595 * 330.20678 * 18 17 14 20 20 C 1.38810 * 120.00016 * 150.20036 * 18 17 14 21 21 N 1.31620 * 119.99942 * 344.47828 * 20 18 17 22 22 Si 1.86795 * 119.99872 * 164.47425 * 20 18 17 23 23 H 1.48502 * 109.47291 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46879 * 120.00159 * 22 20 18 25 25 H 1.48499 * 109.47336 * 240.00094 * 22 20 18 26 26 C 1.46922 * 118.74212 * 306.39104 * 17 14 13 27 27 O 1.34014 * 125.57807 * 0.30381 * 3 2 1 28 28 H 1.09004 * 109.47520 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47235 * 300.00587 * 1 2 3 30 30 H 1.09003 * 109.47340 * 59.99838 * 1 2 3 31 31 H 1.08002 * 126.40812 * 359.97438 * 4 3 2 32 32 H 1.08002 * 126.66024 * 179.97438 * 5 4 3 33 33 H 0.96996 * 120.00640 * 0.02562 * 9 7 6 34 34 H 1.09006 * 109.45988 * 61.29460 * 12 10 9 35 35 H 1.08992 * 109.45875 * 301.33847 * 12 10 9 36 36 H 1.09000 * 109.49464 * 178.68266 * 13 12 10 37 37 H 1.08999 * 109.49496 * 58.58784 * 13 12 10 38 38 H 1.09000 * 109.47586 * 60.28355 * 16 14 13 39 39 H 1.09001 * 109.46932 * 180.28450 * 16 14 13 40 40 H 1.09003 * 109.47027 * 300.27839 * 16 14 13 41 41 H 0.97005 * 119.99905 * 180.02562 * 21 20 18 42 42 H 1.09011 * 109.58794 * 293.82425 * 26 17 14 43 43 H 1.08994 * 109.70847 * 173.46612 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4090 -0.0005 5 6 3.5985 2.7923 -0.0009 6 6 2.3522 3.3809 -0.0012 7 6 2.0796 4.8166 -0.0022 8 8 3.0020 5.6114 -0.0033 9 7 0.8071 5.2608 -0.0029 10 6 0.5338 6.7001 -0.0045 11 1 1.2935 7.2146 -0.5928 12 6 -0.8459 6.9574 -0.6147 13 6 -1.1187 8.4630 -0.6468 14 6 -1.1134 9.0094 0.7843 15 1 -1.9450 8.5795 1.3426 16 6 -1.2504 10.5329 0.7521 17 7 0.1549 8.6395 1.4271 18 6 0.9468 9.5936 2.0084 19 1 0.9449 10.6035 1.6255 20 6 1.7517 9.2629 3.0899 21 7 1.5408 8.1433 3.7491 22 14 3.1341 10.4066 3.6095 23 1 3.1609 11.5901 2.7129 24 1 2.9094 10.8510 5.0086 25 1 4.4308 9.6882 3.5206 26 6 0.5578 7.2267 1.4339 27 8 1.4265 2.3957 0.0058 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 4.1528 0.6451 -0.0006 32 1 4.5516 3.3004 -0.0009 33 1 0.0723 4.6276 -0.0024 34 1 -1.6076 6.4631 -0.0116 35 1 -0.8735 6.5616 -1.6299 36 1 -2.0914 8.6468 -1.1029 37 1 -0.3433 8.9608 -1.2292 38 1 -2.1894 10.8032 0.2690 39 1 -1.2414 10.9202 1.7709 40 1 -0.4180 10.9608 0.1934 41 1 2.1031 7.9124 4.5051 42 1 -0.1376 6.6513 2.0453 43 1 1.5648 7.1336 1.8403 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071926629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:50 Heat of formation + Delta-G solvation = -37.282617 kcal Electronic energy + Delta-G solvation = -26019.675099 eV Core-core repulsion = 22260.794340 eV Total energy + Delta-G solvation = -3758.880759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.77752 -39.42396 -38.66026 -37.53625 -34.51674 -33.23985 -32.78884 -30.96795 -29.90616 -29.40335 -27.45867 -25.93968 -24.95760 -22.88041 -22.19760 -22.02427 -20.64566 -20.05380 -19.37052 -18.88799 -17.51543 -17.17437 -16.43722 -15.79518 -15.49853 -15.26794 -15.00431 -14.22444 -14.07885 -13.78022 -13.65530 -13.36244 -13.27437 -13.11236 -13.02487 -12.72733 -12.44639 -12.37275 -11.85774 -11.81030 -11.45989 -11.12139 -10.88043 -10.70438 -10.55120 -10.39130 -10.24183 -10.07317 -10.00490 -9.90814 -9.54172 -9.45519 -8.63460 -8.40682 -8.11484 -6.59295 -5.72386 -3.17378 1.11054 2.11346 2.32497 2.96629 3.42322 3.46896 3.52040 3.53178 3.55665 4.55566 4.68923 4.76269 4.79273 4.98999 5.07847 5.33472 5.37421 5.37655 5.48632 5.57513 5.61287 5.67895 5.76001 5.96374 6.10096 6.24507 6.27399 6.28417 6.39038 6.42358 6.45834 6.48552 6.63202 6.72693 6.87262 6.96882 7.05686 7.13674 7.31815 7.73889 7.83909 7.89997 8.46941 8.53053 9.26205 9.90451 10.45928 11.35936 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.003950 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.173147 B = 7087.005998 C = 8199.725901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.265 6.265 3 C 0.203 3.797 4 C -0.238 4.238 5 C -0.091 4.091 6 C -0.087 4.087 7 C 0.601 3.399 8 O -0.511 6.511 9 N -0.710 5.710 10 C 0.115 3.885 11 H 0.085 0.915 12 C -0.116 4.116 13 C -0.126 4.126 14 C 0.165 3.835 15 H 0.025 0.975 16 C -0.136 4.136 17 N -0.583 5.583 18 C -0.254 4.254 19 H 0.071 0.929 20 C 0.007 3.993 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.288 1.288 26 C 0.168 3.832 27 O -0.190 6.190 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.395 0.605 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.038 0.962 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.252 0.748 42 H 0.018 0.982 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 -14.107 -9.613 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.179 6.179 3 C 0.107 3.893 4 C -0.258 4.258 5 C -0.111 4.111 6 C -0.138 4.138 7 C 0.387 3.613 8 O -0.388 6.388 9 N -0.359 5.359 10 C 0.010 3.990 11 H 0.103 0.897 12 C -0.154 4.154 13 C -0.166 4.166 14 C 0.058 3.942 15 H 0.042 0.958 16 C -0.194 4.194 17 N -0.306 5.306 18 C -0.383 4.383 19 H 0.088 0.912 20 C -0.192 4.192 21 N -0.544 5.544 22 Si 0.730 3.270 23 H -0.202 1.202 24 H -0.218 1.218 25 H -0.214 1.214 26 C 0.041 3.959 27 O -0.090 6.090 28 H 0.127 0.873 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.179 0.821 32 H 0.185 0.815 33 H 0.229 0.771 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.036 0.964 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.102 -13.663 -9.454 17.114 hybrid contribution 0.150 -0.068 0.420 0.451 sum -3.952 -13.731 -9.034 16.905 Atomic orbital electron populations 1.23154 0.76747 1.04791 1.02799 1.86386 1.23051 1.19014 1.89410 1.20753 0.89535 0.78227 1.00805 1.20745 0.91997 0.96906 1.16148 1.21985 0.98020 0.92418 0.98717 1.22277 0.86929 0.87513 1.17032 1.16326 0.84007 0.83474 0.77535 1.90951 1.44137 1.53248 1.50513 1.45996 1.06557 1.09377 1.73980 1.22092 0.96617 0.77978 1.02266 0.89656 1.21680 0.96524 0.97787 0.99443 1.22050 1.00341 0.94390 0.99792 1.20487 0.89395 0.93636 0.90646 0.95779 1.21797 0.99312 0.96238 1.02027 1.44020 1.18183 1.03458 1.64986 1.19178 1.18383 0.92478 1.08284 0.91150 1.25091 1.00840 0.97525 0.95741 1.70013 1.39147 1.24843 1.20394 0.86269 0.82581 0.80293 0.77899 1.20190 1.21818 1.21449 1.21069 1.02011 0.83928 0.88855 1.83952 1.37899 1.14238 1.72899 0.87315 0.91675 0.91843 0.82079 0.81520 0.77139 0.92259 0.93014 0.92630 0.91983 0.94342 0.91992 0.92765 0.93751 0.96444 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.74 101.05 1.09 1.22 16 2 O -0.26 -2.76 10.55 -41.02 -0.43 -3.19 16 3 C 0.20 2.52 7.86 29.96 0.24 2.76 16 4 C -0.24 -2.88 10.89 -39.73 -0.43 -3.31 16 5 C -0.09 -1.27 10.66 -39.11 -0.42 -1.69 16 6 C -0.09 -1.37 7.15 -36.57 -0.26 -1.63 16 7 C 0.60 11.22 7.73 -13.09 -0.10 11.12 16 8 O -0.51 -11.53 16.53 5.13 0.08 -11.44 16 9 N -0.71 -12.17 5.08 -55.16 -0.28 -12.45 16 10 C 0.12 2.26 2.61 -67.80 -0.18 2.08 16 11 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 12 C -0.12 -1.88 5.35 -26.69 -0.14 -2.02 16 13 C -0.13 -2.13 5.37 -26.61 -0.14 -2.27 16 14 C 0.16 3.37 3.49 -67.60 -0.24 3.13 16 15 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 16 C -0.14 -2.55 7.95 37.16 0.30 -2.25 16 17 N -0.58 -14.55 2.99 -164.78 -0.49 -15.04 16 18 C -0.25 -6.96 8.58 -15.06 -0.13 -7.09 16 19 H 0.07 1.88 6.24 -52.49 -0.33 1.55 16 20 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 21 N -0.90 -26.83 11.23 55.49 0.62 -26.21 16 22 Si 0.90 22.45 29.58 -169.99 -5.03 17.42 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 C 0.17 4.10 4.86 -3.71 -0.02 4.08 16 27 O -0.19 -2.59 9.88 -19.27 -0.19 -2.78 16 28 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.17 2.17 8.06 -52.49 -0.42 1.74 16 33 H 0.40 5.60 8.35 -40.82 -0.34 5.26 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 40 H 0.05 1.03 7.42 -51.93 -0.39 0.65 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 43 H 0.09 2.70 6.15 -51.93 -0.32 2.38 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -32.75 354.59 -7.27 -40.02 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.37 Total: 4.08 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -0.53 Total: 4.24 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.15 Total: -53.70 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.54 Total: -17.41 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.75 -7.27 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071926629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.740 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds