Wall clock time and date at job start Tue Mar 31 2020 10:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35367 * 117.00300 * 2 1 4 4 C 1.36094 * 125.57897 * 180.02562 * 3 2 1 5 5 C 1.39904 * 107.17615 * 179.97438 * 4 3 2 6 6 C 1.37827 * 106.67946 * 359.97438 * 5 4 3 7 7 C 1.46131 * 126.03358 * 180.02562 * 6 5 4 8 8 O 1.21768 * 119.99693 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99822 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99642 * 180.02562 * 9 7 6 11 11 H 1.08993 * 109.52728 * 34.91435 * 10 9 7 12 12 C 1.53040 * 109.49753 * 155.00140 * 10 9 7 13 13 C 1.53041 * 109.53557 * 181.31236 * 12 10 9 14 14 C 1.53191 * 109.31394 * 298.63509 * 13 12 10 15 15 H 1.09001 * 109.58336 * 294.84752 * 14 13 12 16 16 C 1.53000 * 109.58469 * 174.56870 * 14 13 12 17 17 N 1.46921 * 108.77529 * 54.63545 * 14 13 12 18 18 C 1.36942 * 120.62940 * 126.36983 * 17 14 13 19 19 H 1.08001 * 119.99595 * 330.20678 * 18 17 14 20 20 C 1.38810 * 120.00016 * 150.20036 * 18 17 14 21 21 N 1.31620 * 119.99942 * 344.47828 * 20 18 17 22 22 Si 1.86795 * 119.99872 * 164.47425 * 20 18 17 23 23 H 1.48502 * 109.47291 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46879 * 120.00159 * 22 20 18 25 25 H 1.48499 * 109.47336 * 240.00094 * 22 20 18 26 26 C 1.46922 * 118.74212 * 306.39104 * 17 14 13 27 27 O 1.34014 * 125.57807 * 0.30381 * 3 2 1 28 28 H 1.09004 * 109.47520 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47235 * 300.00587 * 1 2 3 30 30 H 1.09003 * 109.47340 * 59.99838 * 1 2 3 31 31 H 1.08002 * 126.40812 * 359.97438 * 4 3 2 32 32 H 1.08002 * 126.66024 * 179.97438 * 5 4 3 33 33 H 0.96996 * 120.00640 * 0.02562 * 9 7 6 34 34 H 1.09006 * 109.45988 * 61.29460 * 12 10 9 35 35 H 1.08992 * 109.45875 * 301.33847 * 12 10 9 36 36 H 1.09000 * 109.49464 * 178.68266 * 13 12 10 37 37 H 1.08999 * 109.49496 * 58.58784 * 13 12 10 38 38 H 1.09000 * 109.47586 * 60.28355 * 16 14 13 39 39 H 1.09001 * 109.46932 * 180.28450 * 16 14 13 40 40 H 1.09003 * 109.47027 * 300.27839 * 16 14 13 41 41 H 0.97005 * 119.99905 * 180.02562 * 21 20 18 42 42 H 1.09011 * 109.58794 * 293.82425 * 26 17 14 43 43 H 1.08994 * 109.70847 * 173.46612 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4090 -0.0005 5 6 3.5985 2.7923 -0.0009 6 6 2.3522 3.3809 -0.0012 7 6 2.0796 4.8166 -0.0022 8 8 3.0020 5.6114 -0.0033 9 7 0.8071 5.2608 -0.0029 10 6 0.5338 6.7001 -0.0045 11 1 1.2935 7.2146 -0.5928 12 6 -0.8459 6.9574 -0.6147 13 6 -1.1187 8.4630 -0.6468 14 6 -1.1134 9.0094 0.7843 15 1 -1.9450 8.5795 1.3426 16 6 -1.2504 10.5329 0.7521 17 7 0.1549 8.6395 1.4271 18 6 0.9468 9.5936 2.0084 19 1 0.9449 10.6035 1.6255 20 6 1.7517 9.2629 3.0899 21 7 1.5408 8.1433 3.7491 22 14 3.1341 10.4066 3.6095 23 1 3.1609 11.5901 2.7129 24 1 2.9094 10.8510 5.0086 25 1 4.4308 9.6882 3.5206 26 6 0.5578 7.2267 1.4339 27 8 1.4265 2.3957 0.0058 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 4.1528 0.6451 -0.0006 32 1 4.5516 3.3004 -0.0009 33 1 0.0723 4.6276 -0.0024 34 1 -1.6076 6.4631 -0.0116 35 1 -0.8735 6.5616 -1.6299 36 1 -2.0914 8.6468 -1.1029 37 1 -0.3433 8.9608 -1.2292 38 1 -2.1894 10.8032 0.2690 39 1 -1.2414 10.9202 1.7709 40 1 -0.4180 10.9608 0.1934 41 1 2.1031 7.9124 4.5051 42 1 -0.1376 6.6513 2.0453 43 1 1.5648 7.1336 1.8403 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071926629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:49 Heat of formation + Delta-G solvation = -59.467950 kcal Electronic energy + Delta-G solvation = -26020.637128 eV Core-core repulsion = 22260.794340 eV Total energy + Delta-G solvation = -3759.842787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.83407 -40.89810 -39.58971 -39.13664 -36.12964 -34.69590 -34.27175 -32.48715 -31.77678 -30.49380 -28.33557 -27.61471 -26.67575 -24.31538 -23.74039 -23.05912 -22.13021 -21.48656 -20.95642 -19.93309 -18.75943 -18.36245 -18.13093 -17.38842 -16.88032 -16.33338 -16.22906 -15.86657 -15.65299 -15.35526 -15.23580 -14.95913 -14.52098 -14.33624 -14.24888 -14.05001 -13.97873 -13.48566 -13.10374 -13.02290 -12.77987 -12.72176 -12.57178 -12.51340 -12.28989 -12.12850 -11.99367 -11.71368 -11.52537 -11.22262 -11.13616 -11.11863 -10.55305 -10.22549 -9.18048 -8.62543 -7.85695 -5.32368 -0.06476 1.07171 1.29248 1.41315 1.45761 1.53849 1.95502 2.11961 2.28178 2.51347 3.31298 3.62505 3.72695 3.80679 3.96388 4.07789 4.22152 4.24520 4.27022 4.32004 4.37707 4.51341 4.59093 4.67523 4.70453 4.78776 4.83494 4.88070 5.00818 5.05979 5.17022 5.21790 5.25613 5.29862 5.32291 5.46318 5.55294 5.60534 5.71147 5.77009 6.03982 6.40132 6.49011 7.07074 7.16736 7.89236 8.39046 9.19992 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.003950 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.173147 B = 7087.005998 C = 8199.725901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.264 6.264 3 C 0.215 3.785 4 C -0.240 4.240 5 C -0.082 4.082 6 C -0.121 4.121 7 C 0.599 3.401 8 O -0.563 6.563 9 N -0.700 5.700 10 C 0.130 3.870 11 H 0.059 0.941 12 C -0.108 4.108 13 C -0.117 4.117 14 C 0.153 3.847 15 H 0.021 0.979 16 C -0.129 4.129 17 N -0.603 5.603 18 C -0.250 4.250 19 H 0.076 0.924 20 C -0.053 4.053 21 N -0.935 5.935 22 Si 0.956 3.044 23 H -0.261 1.261 24 H -0.289 1.289 25 H -0.300 1.300 26 C 0.180 3.820 27 O -0.188 6.188 28 H 0.141 0.859 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.190 0.810 32 H 0.171 0.829 33 H 0.412 0.588 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.046 0.954 41 H 0.244 0.756 42 H -0.003 1.003 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 -15.388 -11.572 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.178 6.178 3 C 0.118 3.882 4 C -0.259 4.259 5 C -0.103 4.103 6 C -0.171 4.171 7 C 0.387 3.613 8 O -0.444 6.444 9 N -0.349 5.349 10 C 0.024 3.976 11 H 0.077 0.923 12 C -0.145 4.145 13 C -0.157 4.157 14 C 0.048 3.952 15 H 0.039 0.961 16 C -0.187 4.187 17 N -0.327 5.327 18 C -0.381 4.381 19 H 0.094 0.906 20 C -0.248 4.248 21 N -0.582 5.582 22 Si 0.785 3.215 23 H -0.185 1.185 24 H -0.216 1.216 25 H -0.227 1.227 26 C 0.053 3.947 27 O -0.089 6.089 28 H 0.159 0.841 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.208 0.792 32 H 0.188 0.812 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.015 0.985 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.824 -14.956 -11.445 19.712 hybrid contribution 0.568 0.176 1.011 1.173 sum -5.257 -14.780 -10.434 18.840 Atomic orbital electron populations 1.23517 0.74693 1.07105 1.03131 1.86424 1.25099 1.17469 1.88761 1.21089 0.89989 0.78374 0.98762 1.21054 0.92708 0.96416 1.15725 1.22244 0.97678 0.93560 0.96779 1.21641 0.87884 0.86604 1.20976 1.16665 0.83664 0.84609 0.76355 1.90910 1.45493 1.55078 1.52954 1.45812 1.06922 1.08761 1.73441 1.21652 0.98443 0.78901 0.98597 0.92294 1.21657 0.93865 0.97815 1.01212 1.21956 1.02430 0.94324 0.96949 1.20813 0.86920 0.95085 0.92399 0.96116 1.21731 1.01224 0.94778 1.00935 1.44320 1.20025 1.03104 1.65254 1.19524 1.17987 0.93142 1.07428 0.90625 1.25817 1.03359 0.99083 0.96530 1.70172 1.40179 1.26751 1.21071 0.85360 0.79371 0.78988 0.77772 1.18535 1.21565 1.22731 1.20738 0.98341 0.84198 0.91410 1.83902 1.37485 1.14369 1.73140 0.84108 0.91751 0.91118 0.79245 0.81170 0.75178 0.90935 0.89554 0.88436 0.92667 0.90208 0.94349 0.93464 0.94644 0.98520 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 10.74 113.37 1.22 1.32 16 2 O -0.26 -4.77 10.55 -64.37 -0.68 -5.45 16 3 C 0.22 4.92 7.86 67.32 0.53 5.45 16 4 C -0.24 -5.34 10.89 22.17 0.24 -5.10 16 5 C -0.08 -2.27 10.66 22.58 0.24 -2.03 16 6 C -0.12 -3.83 7.15 24.22 0.17 -3.65 16 7 C 0.60 23.23 7.73 86.29 0.67 23.90 16 8 O -0.56 -26.97 16.53 -4.57 -0.08 -27.04 16 9 N -0.70 -24.31 5.08 -446.61 -2.27 -26.58 16 10 C 0.13 5.15 2.61 45.07 0.12 5.27 16 11 H 0.06 2.67 7.58 -2.39 -0.02 2.65 16 12 C -0.11 -3.20 5.35 30.62 0.16 -3.04 16 13 C -0.12 -3.61 5.37 30.67 0.16 -3.45 16 14 C 0.15 6.07 3.49 44.98 0.16 6.23 16 15 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 16 C -0.13 -4.63 7.95 71.98 0.57 -4.05 16 17 N -0.60 -30.75 2.99 -675.23 -2.02 -32.77 16 18 C -0.25 -14.11 8.58 84.03 0.72 -13.38 16 19 H 0.08 4.10 6.24 -2.91 -0.02 4.08 16 20 C -0.05 -3.11 4.94 84.86 0.42 -2.69 16 21 N -0.94 -58.71 11.23 21.65 0.24 -58.46 16 22 Si 0.96 47.79 29.58 68.60 2.03 49.82 16 23 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 25 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 26 C 0.18 9.17 4.86 86.37 0.42 9.59 16 27 O -0.19 -4.95 9.88 13.46 0.13 -4.82 16 28 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.19 3.04 8.06 -2.91 -0.02 3.01 16 32 H 0.17 4.49 8.06 -2.91 -0.02 4.46 16 33 H 0.41 11.38 8.35 -92.71 -0.77 10.61 16 34 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.04 1.52 7.66 -2.39 -0.02 1.50 16 40 H 0.05 1.73 7.42 -2.39 -0.02 1.71 16 41 H 0.24 15.03 8.31 -92.70 -0.77 14.26 16 42 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 43 H 0.04 2.60 6.15 -2.39 -0.01 2.58 16 Total: -1.00 -76.30 354.59 3.42 -72.88 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.25 Total: 18.08 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 5.80 Total: 14.34 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -4.04 Total: -117.81 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.62 Total: -37.31 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -76.30 3.42 -72.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071926629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.409 kcal (2) G-P(sol) polarization free energy of solvation -76.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds