Wall clock time and date at job start Tue Mar 31 2020 10:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35372 * 117.00165 * 2 1 4 4 C 1.36098 * 125.57795 * 179.97438 * 3 2 1 5 5 C 1.39909 * 107.17293 * 179.97438 * 4 3 2 6 6 C 1.37831 * 106.68223 * 359.97438 * 5 4 3 7 7 C 1.46124 * 126.03366 * 179.97438 * 6 5 4 8 8 O 1.21769 * 120.00408 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99895 * 180.02562 * 7 6 5 10 10 C 1.48315 * 127.77039 * 179.97438 * 9 7 6 11 11 C 1.54385 * 104.53750 * 219.53004 * 10 9 7 12 12 H 1.08997 * 110.34548 * 95.18221 * 11 10 9 13 13 C 1.53004 * 110.34091 * 217.33303 * 11 10 9 14 14 N 1.46499 * 109.47198 * 292.12406 * 13 11 10 15 15 C 1.36939 * 119.99933 * 180.27608 * 14 13 11 16 16 H 1.08001 * 119.99700 * 359.72658 * 15 14 13 17 17 C 1.38810 * 120.00095 * 179.71972 * 15 14 13 18 18 N 1.31624 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47144 * 90.00258 * 19 17 15 21 21 H 1.48500 * 109.47140 * 210.00775 * 19 17 15 22 22 H 1.48502 * 109.46967 * 330.00206 * 19 17 15 23 23 C 1.54283 * 105.05420 * 336.25517 * 11 10 9 24 24 H 1.08995 * 110.34709 * 240.97088 * 23 11 10 25 25 C 1.53002 * 110.34028 * 118.81593 * 23 11 10 26 26 C 1.48139 * 127.84024 * 0.02618 * 9 7 6 27 27 O 1.34010 * 125.57867 * 0.30308 * 3 2 1 28 28 H 1.08997 * 109.47326 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47493 * 300.01108 * 1 2 3 30 30 H 1.09002 * 109.46949 * 60.00648 * 1 2 3 31 31 H 1.07995 * 126.41443 * 359.97438 * 4 3 2 32 32 H 1.07998 * 126.66285 * 180.02562 * 5 4 3 33 33 H 1.08998 * 110.38541 * 100.79826 * 10 9 7 34 34 H 1.09004 * 110.50344 * 338.31646 * 10 9 7 35 35 H 1.09009 * 109.46730 * 172.12193 * 13 11 10 36 36 H 1.08998 * 109.46846 * 52.12738 * 13 11 10 37 37 H 0.97001 * 119.99790 * 359.97438 * 14 13 11 38 38 H 0.96998 * 119.99409 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.47026 * 60.00792 * 25 23 11 40 40 H 1.09009 * 109.47071 * 179.97438 * 25 23 11 41 41 H 1.08992 * 109.47525 * 300.00076 * 25 23 11 42 42 H 1.09004 * 110.40600 * 21.62261 * 26 9 7 43 43 H 1.09000 * 110.51348 * 259.24364 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3893 1.4091 0.0005 5 6 3.5984 2.7925 -0.0003 6 6 2.3521 3.3811 -0.0019 7 6 2.0794 4.8166 -0.0026 8 8 3.0018 5.6116 -0.0023 9 7 0.8070 5.2608 -0.0036 10 6 0.3357 6.6671 -0.0039 11 6 -0.8811 6.6683 0.9463 12 1 -0.5776 6.9648 1.9502 13 6 -1.9661 7.6099 0.4198 14 7 -1.4946 8.9944 0.5051 15 6 -2.3034 10.0197 0.0930 16 1 -3.2871 9.8073 -0.2990 17 6 -1.8590 11.3319 0.1793 18 7 -0.6600 11.5906 0.6567 19 14 -2.9620 12.7305 -0.3835 20 1 -3.7899 13.1977 0.7572 21 1 -2.1248 13.8521 -0.8799 22 1 -3.8481 12.2533 -1.4755 23 6 -1.3897 5.2117 0.9479 24 1 -2.4130 5.1672 0.5754 25 6 -1.3117 4.6227 2.3578 26 6 -0.4366 4.4558 -0.0036 27 8 1.4264 2.3957 0.0058 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 4.1528 0.6454 0.0013 32 1 4.5514 3.3006 -0.0006 33 1 0.0344 6.9663 -1.0078 34 1 1.1137 7.3306 0.3739 35 1 -2.8688 7.4957 1.0201 36 1 -2.1872 7.3647 -0.6190 37 1 -0.6113 9.1850 0.8576 38 1 -0.3494 12.5075 0.7166 39 1 -1.9284 5.2152 3.0337 40 1 -1.6743 3.5948 2.3428 41 1 -0.2775 4.6385 2.7015 42 1 -0.2398 3.4523 0.3738 43 1 -0.8603 4.4074 -1.0067 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106794027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:43 Heat of formation + Delta-G solvation = -39.538479 kcal Electronic energy + Delta-G solvation = -25684.053776 eV Core-core repulsion = 21925.075195 eV Total energy + Delta-G solvation = -3758.978581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.00026 -39.96110 -38.88625 -37.86790 -34.68238 -33.51736 -32.71554 -31.42328 -30.13420 -28.96264 -27.61948 -26.53580 -25.49740 -23.53420 -22.36753 -22.19224 -21.17255 -20.07396 -19.77322 -18.81141 -17.59322 -17.38344 -16.85967 -16.03037 -15.90632 -15.53821 -15.23419 -14.66374 -14.45348 -14.00401 -13.63742 -13.53032 -13.44582 -13.40132 -13.14838 -13.00597 -12.92014 -12.59648 -12.36303 -12.03636 -11.94192 -11.68360 -11.31059 -11.16632 -10.86068 -10.60134 -10.54705 -10.32988 -10.27844 -10.19325 -9.99000 -9.66928 -8.88766 -8.76698 -8.29159 -6.92937 -5.75525 -3.05134 0.87124 1.90812 2.11714 2.71839 3.04360 3.14538 3.44242 3.49052 3.51228 4.37525 4.52388 4.57271 4.59450 4.61343 4.65519 4.86721 4.88999 4.94175 5.16562 5.30519 5.37241 5.46866 5.48308 5.53145 5.57103 5.58454 5.72944 5.76733 5.94101 6.02238 6.04698 6.07832 6.13581 6.19748 6.28360 6.38311 6.50685 6.69209 6.80328 6.82339 7.50083 7.69900 8.04487 8.42681 9.53919 10.10781 10.45138 11.47081 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.002959 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.958457 B = 9461.736772 C =10184.888362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.263 6.263 3 C 0.205 3.795 4 C -0.239 4.239 5 C -0.086 4.086 6 C -0.089 4.089 7 C 0.621 3.379 8 O -0.521 6.521 9 N -0.614 5.614 10 C 0.117 3.883 11 C -0.104 4.104 12 H 0.084 0.916 13 C 0.164 3.836 14 N -0.733 5.733 15 C -0.242 4.242 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.101 4.101 24 H 0.090 0.910 25 C -0.140 4.140 26 C 0.103 3.897 27 O -0.185 6.185 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.023 0.977 36 H 0.021 0.979 37 H 0.385 0.615 38 H 0.256 0.744 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 -26.101 -0.199 26.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.177 6.177 3 C 0.109 3.891 4 C -0.259 4.259 5 C -0.106 4.106 6 C -0.140 4.140 7 C 0.410 3.590 8 O -0.399 6.399 9 N -0.346 5.346 10 C -0.004 4.004 11 C -0.123 4.123 12 H 0.102 0.898 13 C 0.036 3.964 14 N -0.378 5.378 15 C -0.373 4.373 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.120 4.120 24 H 0.109 0.891 25 C -0.198 4.198 26 C -0.020 4.020 27 O -0.085 6.085 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.180 0.820 32 H 0.185 0.815 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.218 0.782 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.394 -25.734 -0.277 25.846 hybrid contribution -0.570 0.771 -0.181 0.976 sum 1.825 -24.962 -0.458 25.033 Atomic orbital electron populations 1.23186 0.76594 1.04994 1.02792 1.86400 1.23158 1.18935 1.89234 1.20877 0.89668 0.78444 1.00118 1.20763 0.92078 0.96859 1.16217 1.21985 0.97835 0.92492 0.98333 1.21987 0.86901 0.87156 1.17908 1.15915 0.81859 0.83858 0.77345 1.90937 1.43268 1.53712 1.51997 1.48929 1.04365 1.09799 1.71544 1.22556 0.96439 0.80766 1.00674 1.22409 0.95693 0.94029 1.00198 0.89776 1.20720 0.93509 0.85080 0.97122 1.42379 1.18605 0.99682 1.77097 1.19199 0.97370 0.86098 1.34644 0.91197 1.24754 0.96883 0.97327 1.01931 1.69664 1.17682 1.18999 1.51597 0.86193 0.79489 0.82329 0.78181 1.21746 1.21762 1.20782 1.22127 0.99382 0.94827 0.95706 0.89149 1.21825 1.01961 1.00074 0.95911 1.22645 0.84102 0.95318 0.99960 1.84091 1.37382 1.14132 1.72905 0.87161 0.91728 0.91704 0.81992 0.81480 0.90026 0.89328 0.95931 0.96086 0.78178 0.93449 0.91923 0.92986 0.92809 0.89878 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.74 101.05 1.09 1.18 16 2 O -0.26 -2.26 10.55 -41.04 -0.43 -2.69 16 3 C 0.21 2.11 7.86 29.96 0.24 2.34 16 4 C -0.24 -2.37 10.89 -39.73 -0.43 -2.80 16 5 C -0.09 -0.98 10.66 -39.11 -0.42 -1.40 16 6 C -0.09 -1.18 7.00 -36.57 -0.26 -1.44 16 7 C 0.62 9.91 7.86 -13.10 -0.10 9.81 16 8 O -0.52 -9.99 17.14 5.13 0.09 -9.91 16 9 N -0.61 -9.09 3.32 -170.88 -0.57 -9.66 16 10 C 0.12 1.94 6.34 -2.32 -0.01 1.93 16 11 C -0.10 -1.62 2.76 -89.22 -0.25 -1.87 16 12 H 0.08 1.41 7.71 -51.93 -0.40 1.01 16 13 C 0.16 3.12 5.37 -4.04 -0.02 3.10 16 14 N -0.73 -18.25 5.46 -59.90 -0.33 -18.58 16 15 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 19 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 C -0.10 -1.20 3.31 -89.20 -0.30 -1.49 16 24 H 0.09 0.98 7.71 -51.93 -0.40 0.58 16 25 C -0.14 -1.50 8.91 37.16 0.33 -1.17 16 26 C 0.10 1.19 6.25 -2.39 -0.01 1.18 16 27 O -0.18 -2.09 7.27 -19.27 -0.14 -2.23 16 28 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.08 1.41 7.78 -51.93 -0.40 1.01 16 34 H 0.09 1.66 7.88 -51.93 -0.41 1.26 16 35 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.02 0.40 8.02 -51.93 -0.42 -0.01 16 37 H 0.38 10.16 7.56 -40.82 -0.31 9.85 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.87 5.25 -51.93 -0.27 0.59 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -33.20 360.42 -7.03 -40.22 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.39 Total: 5.58 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.40 Total: 2.04 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.17 Total: -55.85 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.49 Total: -14.83 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.20 -7.03 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106794027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.685 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds