Wall clock time and date at job start Tue Mar 31 2020 10:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35372 * 117.00165 * 2 1 4 4 C 1.36098 * 125.57795 * 179.97438 * 3 2 1 5 5 C 1.39909 * 107.17293 * 179.97438 * 4 3 2 6 6 C 1.37831 * 106.68223 * 359.97438 * 5 4 3 7 7 C 1.46124 * 126.03366 * 179.97438 * 6 5 4 8 8 O 1.21769 * 120.00408 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99895 * 180.02562 * 7 6 5 10 10 C 1.48315 * 127.77039 * 179.97438 * 9 7 6 11 11 C 1.54385 * 104.53750 * 219.53004 * 10 9 7 12 12 H 1.08997 * 110.34548 * 95.18221 * 11 10 9 13 13 C 1.53004 * 110.34091 * 217.33303 * 11 10 9 14 14 N 1.46499 * 109.47198 * 292.12406 * 13 11 10 15 15 C 1.36939 * 119.99933 * 180.27608 * 14 13 11 16 16 H 1.08001 * 119.99700 * 359.72658 * 15 14 13 17 17 C 1.38810 * 120.00095 * 179.71972 * 15 14 13 18 18 N 1.31624 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47144 * 90.00258 * 19 17 15 21 21 H 1.48500 * 109.47140 * 210.00775 * 19 17 15 22 22 H 1.48502 * 109.46967 * 330.00206 * 19 17 15 23 23 C 1.54283 * 105.05420 * 336.25517 * 11 10 9 24 24 H 1.08995 * 110.34709 * 240.97088 * 23 11 10 25 25 C 1.53002 * 110.34028 * 118.81593 * 23 11 10 26 26 C 1.48139 * 127.84024 * 0.02618 * 9 7 6 27 27 O 1.34010 * 125.57867 * 0.30308 * 3 2 1 28 28 H 1.08997 * 109.47326 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47493 * 300.01108 * 1 2 3 30 30 H 1.09002 * 109.46949 * 60.00648 * 1 2 3 31 31 H 1.07995 * 126.41443 * 359.97438 * 4 3 2 32 32 H 1.07998 * 126.66285 * 180.02562 * 5 4 3 33 33 H 1.08998 * 110.38541 * 100.79826 * 10 9 7 34 34 H 1.09004 * 110.50344 * 338.31646 * 10 9 7 35 35 H 1.09009 * 109.46730 * 172.12193 * 13 11 10 36 36 H 1.08998 * 109.46846 * 52.12738 * 13 11 10 37 37 H 0.97001 * 119.99790 * 359.97438 * 14 13 11 38 38 H 0.96998 * 119.99409 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.47026 * 60.00792 * 25 23 11 40 40 H 1.09009 * 109.47071 * 179.97438 * 25 23 11 41 41 H 1.08992 * 109.47525 * 300.00076 * 25 23 11 42 42 H 1.09004 * 110.40600 * 21.62261 * 26 9 7 43 43 H 1.09000 * 110.51348 * 259.24364 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3893 1.4091 0.0005 5 6 3.5984 2.7925 -0.0003 6 6 2.3521 3.3811 -0.0019 7 6 2.0794 4.8166 -0.0026 8 8 3.0018 5.6116 -0.0023 9 7 0.8070 5.2608 -0.0036 10 6 0.3357 6.6671 -0.0039 11 6 -0.8811 6.6683 0.9463 12 1 -0.5776 6.9648 1.9502 13 6 -1.9661 7.6099 0.4198 14 7 -1.4946 8.9944 0.5051 15 6 -2.3034 10.0197 0.0930 16 1 -3.2871 9.8073 -0.2990 17 6 -1.8590 11.3319 0.1793 18 7 -0.6600 11.5906 0.6567 19 14 -2.9620 12.7305 -0.3835 20 1 -3.7899 13.1977 0.7572 21 1 -2.1248 13.8521 -0.8799 22 1 -3.8481 12.2533 -1.4755 23 6 -1.3897 5.2117 0.9479 24 1 -2.4130 5.1672 0.5754 25 6 -1.3117 4.6227 2.3578 26 6 -0.4366 4.4558 -0.0036 27 8 1.4264 2.3957 0.0058 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 4.1528 0.6454 0.0013 32 1 4.5514 3.3006 -0.0006 33 1 0.0344 6.9663 -1.0078 34 1 1.1137 7.3306 0.3739 35 1 -2.8688 7.4957 1.0201 36 1 -2.1872 7.3647 -0.6190 37 1 -0.6113 9.1850 0.8576 38 1 -0.3494 12.5075 0.7166 39 1 -1.9284 5.2152 3.0337 40 1 -1.6743 3.5948 2.3428 41 1 -0.2775 4.6385 2.7015 42 1 -0.2398 3.4523 0.3738 43 1 -0.8603 4.4074 -1.0067 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106794027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:43 Heat of formation + Delta-G solvation = -61.259940 kcal Electronic energy + Delta-G solvation = -25684.995689 eV Core-core repulsion = 21925.075195 eV Total energy + Delta-G solvation = -3759.920494 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.84940 -41.14070 -39.59414 -39.09657 -36.46748 -34.45366 -34.03660 -33.04739 -31.27721 -30.23211 -28.35824 -27.51117 -26.95552 -25.21502 -23.50571 -23.04897 -22.44322 -21.08291 -21.00341 -19.63281 -19.14403 -18.40692 -18.16780 -17.20947 -17.00283 -16.52473 -16.28285 -15.97202 -15.81734 -15.31647 -15.16195 -14.79447 -14.60813 -14.35993 -14.19866 -14.16260 -14.00109 -13.75680 -13.30806 -13.04819 -13.00000 -12.84957 -12.69757 -12.50304 -12.48516 -12.14696 -11.98977 -11.81754 -11.64166 -11.44308 -11.40736 -11.12666 -10.93060 -9.97619 -9.15240 -8.99357 -7.93766 -5.23196 -0.09014 1.04700 1.28721 1.47772 1.49806 1.58176 1.75793 2.02129 2.21495 2.56753 3.35008 3.40666 3.50702 3.67678 3.75516 3.79686 4.16586 4.20220 4.24150 4.30116 4.30671 4.34377 4.47009 4.48238 4.54842 4.61801 4.70990 4.74175 4.81084 4.83670 4.85306 4.97180 5.02882 5.16420 5.22766 5.23983 5.26164 5.43459 5.49265 5.51638 6.07636 6.27783 6.35313 6.84400 7.33956 8.10060 8.31759 9.29928 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.002959 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.958457 B = 9461.736772 C =10184.888362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.265 6.265 3 C 0.217 3.783 4 C -0.242 4.242 5 C -0.076 4.076 6 C -0.119 4.119 7 C 0.616 3.384 8 O -0.569 6.569 9 N -0.615 5.615 10 C 0.121 3.879 11 C -0.093 4.093 12 H 0.069 0.931 13 C 0.164 3.836 14 N -0.749 5.749 15 C -0.243 4.243 16 H 0.080 0.920 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.974 3.026 20 H -0.287 1.287 21 H -0.299 1.299 22 H -0.267 1.267 23 C -0.091 4.091 24 H 0.113 0.887 25 C -0.137 4.137 26 C 0.104 3.896 27 O -0.183 6.183 28 H 0.138 0.862 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.188 0.812 32 H 0.173 0.827 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.372 0.628 38 H 0.250 0.750 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.037 0.963 42 H 0.101 0.899 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 -29.186 -0.566 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.178 6.178 3 C 0.120 3.880 4 C -0.262 4.262 5 C -0.097 4.097 6 C -0.169 4.169 7 C 0.408 3.592 8 O -0.452 6.452 9 N -0.346 5.346 10 C -0.002 4.002 11 C -0.113 4.113 12 H 0.087 0.913 13 C 0.038 3.962 14 N -0.391 5.391 15 C -0.374 4.374 16 H 0.098 0.902 17 C -0.271 4.271 18 N -0.623 5.623 19 Si 0.803 3.197 20 H -0.214 1.214 21 H -0.226 1.226 22 H -0.191 1.191 23 C -0.110 4.110 24 H 0.131 0.869 25 C -0.194 4.194 26 C -0.017 4.017 27 O -0.083 6.083 28 H 0.156 0.844 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.205 0.795 32 H 0.190 0.810 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.119 0.881 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.451 -28.890 -0.652 28.900 hybrid contribution -0.027 1.526 -0.073 1.528 sum 0.423 -27.363 -0.725 27.376 Atomic orbital electron populations 1.23541 0.74623 1.07115 1.03300 1.86436 1.25160 1.17602 1.88649 1.21163 0.90066 0.78559 0.98262 1.21057 0.92757 0.96473 1.15873 1.22237 0.97578 0.93444 0.96423 1.21400 0.87798 0.86198 1.21545 1.16275 0.81507 0.84942 0.76506 1.90894 1.44600 1.55328 1.54348 1.48974 1.05254 1.09273 1.71079 1.22306 0.95970 0.81751 1.00138 1.22238 0.94304 0.96112 0.98616 0.91296 1.20893 0.94670 0.82856 0.97799 1.42640 1.17925 1.01690 1.76851 1.19658 0.97767 0.86939 1.33063 0.90186 1.25609 0.98350 1.00023 1.03105 1.69840 1.19703 1.18957 1.53771 0.85124 0.77675 0.78858 0.78010 1.21367 1.22556 1.19140 1.22134 1.00326 0.91641 0.96908 0.86937 1.21803 1.01145 1.01735 0.94706 1.22857 0.82395 0.95559 1.00926 1.84021 1.36982 1.14189 1.73156 0.84377 0.91151 0.91241 0.79486 0.80967 0.90950 0.92717 0.94919 0.95176 0.79675 0.94121 0.92145 0.89968 0.94355 0.88071 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 10.74 113.37 1.22 1.27 16 2 O -0.26 -3.66 10.55 -64.42 -0.68 -4.34 16 3 C 0.22 3.88 7.86 67.32 0.53 4.41 16 4 C -0.24 -4.23 10.89 22.18 0.24 -3.99 16 5 C -0.08 -1.68 10.66 22.58 0.24 -1.44 16 6 C -0.12 -3.10 7.00 24.22 0.17 -2.93 16 7 C 0.62 20.29 7.86 86.29 0.68 20.97 16 8 O -0.57 -23.24 17.14 -4.57 -0.08 -23.32 16 9 N -0.61 -18.43 3.32 -812.73 -2.70 -21.13 16 10 C 0.12 4.20 6.34 86.50 0.55 4.75 16 11 C -0.09 -2.92 2.76 -9.89 -0.03 -2.94 16 12 H 0.07 2.38 7.71 -2.39 -0.02 2.37 16 13 C 0.16 6.18 5.37 86.38 0.46 6.64 16 14 N -0.75 -37.93 5.46 -343.44 -1.87 -39.80 16 15 C -0.24 -13.50 9.99 84.03 0.84 -12.66 16 16 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 17 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 18 N -0.97 -60.93 13.06 21.65 0.28 -60.64 16 19 Si 0.97 46.51 29.55 68.60 2.03 48.53 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 C -0.09 -1.95 3.31 -9.87 -0.03 -1.99 16 24 H 0.11 2.01 7.71 -2.39 -0.02 1.99 16 25 C -0.14 -2.60 8.91 71.98 0.64 -1.96 16 26 C 0.10 2.21 6.25 86.55 0.54 2.75 16 27 O -0.18 -3.77 7.27 13.47 0.10 -3.68 16 28 H 0.14 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.19 2.22 8.06 -2.91 -0.02 2.19 16 32 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.07 2.62 7.78 -2.39 -0.02 2.60 16 34 H 0.05 2.25 7.88 -2.38 -0.02 2.23 16 35 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.03 1.11 8.02 -2.39 -0.02 1.09 16 37 H 0.37 20.52 7.56 -92.71 -0.70 19.82 16 38 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.10 1.82 5.25 -2.38 -0.01 1.80 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -74.11 360.42 3.92 -70.20 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.32 Total: 25.41 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 6.52 Total: 8.77 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -4.29 Total: -121.57 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.66 Total: -31.34 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -74.11 3.92 -70.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106794027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.938 kcal (2) G-P(sol) polarization free energy of solvation -74.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds