Wall clock time and date at job start Tue Mar 31 2020 09:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47456 * 2 1 4 4 N 1.46901 * 109.47267 * 178.62171 * 3 2 1 5 5 C 1.53001 * 109.47014 * 58.62473 * 3 2 1 6 6 O 1.42903 * 109.46944 * 54.87132 * 5 3 2 7 7 N 1.46498 * 109.47231 * 298.62762 * 3 2 1 8 8 C 1.39153 * 119.99519 * 292.31207 * 7 3 2 9 9 C 1.39416 * 119.50379 * 358.53930 * 8 7 3 10 10 C 1.37799 * 121.19563 * 180.29987 * 9 8 7 11 11 C 1.39571 * 120.14211 * 359.44573 * 10 9 8 12 12 C 1.47010 * 120.48753 * 180.27790 * 11 10 9 13 13 O 1.21563 * 119.99980 * 184.28104 * 12 11 10 14 14 O 1.34842 * 119.99826 * 4.27152 * 12 11 10 15 15 C 1.45199 * 116.99483 * 180.02562 * 14 12 11 16 16 C 1.46541 * 119.02713 * 0.54094 * 11 10 9 17 17 C 1.40938 * 120.56753 * 179.71144 * 16 11 10 18 18 H 1.08000 * 119.99917 * 33.25325 * 17 16 11 19 19 C 1.40250 * 120.00022 * 213.24781 * 17 16 11 20 20 N 1.30639 * 119.99770 * 8.81712 * 19 17 16 21 21 Si 1.86802 * 120.00164 * 188.81349 * 19 17 16 22 22 H 1.48503 * 109.47086 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46944 * 120.00326 * 21 19 17 24 24 H 1.48495 * 109.47026 * 240.00114 * 21 19 17 25 25 C 1.38443 * 119.49729 * 178.55931 * 8 7 3 26 26 H 1.09006 * 109.46808 * 303.69558 * 1 2 3 27 27 H 1.09004 * 109.47118 * 63.69141 * 1 2 3 28 28 H 1.08998 * 109.47489 * 183.69909 * 1 2 3 29 29 H 1.09009 * 109.46875 * 240.00182 * 2 1 3 30 30 H 1.08996 * 109.47226 * 120.00305 * 2 1 3 31 31 H 1.00897 * 110.99787 * 179.97438 * 4 3 2 32 32 H 1.00894 * 111.00143 * 303.96072 * 4 3 2 33 33 H 1.08994 * 109.47193 * 174.87074 * 5 3 2 34 34 H 1.08997 * 109.47287 * 294.87460 * 5 3 2 35 35 H 0.96702 * 113.99678 * 180.02562 * 6 5 3 36 36 H 0.96997 * 120.00237 * 112.31735 * 7 3 2 37 37 H 1.08000 * 119.40063 * 0.02562 * 9 8 7 38 38 H 1.08002 * 119.92332 * 179.72657 * 10 9 8 39 39 H 1.09006 * 109.47118 * 299.99452 * 15 14 12 40 40 H 1.08997 * 109.47461 * 60.00130 * 15 14 12 41 41 H 1.09011 * 109.46694 * 180.02562 * 15 14 12 42 42 H 0.97005 * 119.99704 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.11307 * 359.95522 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5087 1.4425 0.0333 5 6 1.5020 2.1736 1.2316 6 8 1.8510 1.4434 2.4093 7 7 1.5790 2.1235 -1.2123 8 6 2.0700 1.7383 -2.4561 9 6 3.0231 0.7238 -2.5338 10 6 3.5374 0.3191 -3.7465 11 6 3.0987 0.9174 -4.9287 12 6 3.6378 0.4873 -6.2270 13 8 3.3082 1.0661 -7.2438 14 8 4.4980 -0.5492 -6.2898 15 6 4.9903 -0.9184 -7.6050 16 6 2.0970 1.9845 -4.8563 17 6 1.6356 2.6151 -6.0292 18 1 1.5543 2.0534 -6.9481 19 6 1.2818 3.9720 -6.0032 20 7 1.5399 4.6941 -4.9455 21 14 0.4418 4.7469 -7.4808 22 1 0.2629 3.7232 -8.5417 23 1 -0.8852 5.2756 -7.0749 24 1 1.2794 5.8576 -8.0003 25 6 1.6048 2.3686 -3.5976 26 1 -0.3633 0.5702 0.8551 27 1 -0.3633 0.4555 -0.9213 28 1 -0.3634 -1.0255 0.0663 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8703 2.3845 0.0335 32 1 3.8524 0.9227 0.8268 33 1 1.9374 3.1717 1.2806 34 1 0.4172 2.2534 1.1617 35 1 1.5409 1.8496 3.2303 36 1 0.9316 2.8429 -1.1481 37 1 3.3678 0.2496 -1.6268 38 1 4.2783 -0.4659 -3.7824 39 1 4.1507 -1.1955 -8.2426 40 1 5.5179 -0.0727 -8.0461 41 1 5.6715 -1.7645 -7.5136 42 1 1.2955 5.6327 -4.9276 43 1 0.8660 3.1526 -3.5208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170862194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:07 Heat of formation + Delta-G solvation = -99.044251 kcal Electronic energy + Delta-G solvation = -26216.932809 eV Core-core repulsion = 22455.373865 eV Total energy + Delta-G solvation = -3761.558945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.28513 -38.89937 -37.04189 -35.61603 -34.88137 -33.54101 -32.06307 -31.35813 -29.50476 -28.60683 -27.06665 -26.15785 -25.29319 -23.80366 -21.91481 -20.96750 -19.75988 -19.02026 -17.71290 -17.06440 -16.50206 -16.21231 -15.69829 -15.57045 -15.22225 -15.18692 -14.94839 -14.40005 -14.03886 -13.49658 -13.36094 -12.99859 -12.73901 -12.57749 -12.37021 -12.16169 -12.13122 -11.68899 -11.48643 -11.40103 -11.15850 -11.12620 -10.91932 -10.82458 -10.57705 -10.44364 -10.20449 -10.15607 -9.78882 -9.49870 -9.33995 -8.89988 -8.69467 -8.21735 -7.23357 -6.77758 -6.26512 -4.34659 2.45964 2.93884 3.12137 3.22298 3.37335 3.63507 3.95063 4.00884 4.15175 4.37588 4.77409 4.82445 4.89686 4.93896 5.28556 5.47222 5.61122 5.71334 5.71689 5.77416 5.81079 5.96193 6.03812 6.20461 6.31952 6.46330 6.52715 6.58502 6.82633 6.97422 7.10607 7.17976 7.26409 7.33696 7.39673 7.49852 7.56525 7.84035 7.96579 8.01429 8.13192 8.49544 8.61921 8.79200 8.90485 9.03836 9.31507 10.19892 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.004923 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.284703 B = 5686.191407 C = 7387.072355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.366 3.634 4 N -0.834 5.834 5 C 0.038 3.962 6 O -0.564 6.564 7 N -0.742 5.742 8 C 0.249 3.751 9 C -0.278 4.278 10 C -0.013 4.013 11 C -0.288 4.288 12 C 0.503 3.497 13 O -0.527 6.527 14 O -0.376 6.376 15 C 0.041 3.959 16 C 0.183 3.817 17 C -0.420 4.420 18 H 0.102 0.898 19 C 0.072 3.928 20 N -0.788 5.788 21 Si 0.913 3.087 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.237 4.237 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.340 0.660 32 H 0.346 0.654 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.379 0.621 36 H 0.391 0.609 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.278 0.722 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 -3.768 11.344 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.186 3.814 4 N -0.367 5.367 5 C -0.043 4.043 6 O -0.369 6.369 7 N -0.377 5.377 8 C 0.150 3.850 9 C -0.300 4.300 10 C -0.032 4.032 11 C -0.291 4.291 12 C 0.355 3.645 13 O -0.419 6.419 14 O -0.295 6.295 15 C -0.054 4.054 16 C 0.178 3.822 17 C -0.448 4.448 18 H 0.120 0.880 19 C -0.147 4.147 20 N -0.413 5.413 21 Si 0.738 3.262 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.261 4.261 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.226 0.774 36 H 0.224 0.776 37 H 0.149 0.851 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.402 -4.283 10.095 10.973 hybrid contribution -0.823 1.858 0.544 2.104 sum -1.225 -2.424 10.639 10.980 Atomic orbital electron populations 1.21719 0.95836 1.01113 1.01594 1.21864 0.95883 0.95562 1.03176 1.19988 0.86521 0.92072 0.82798 1.58934 1.07408 1.20780 1.49592 1.23105 0.99739 0.94475 0.86939 1.86415 1.81396 1.53014 1.16034 1.44359 1.49617 1.41030 1.02696 1.17621 0.91616 0.92393 0.83375 1.20542 1.06465 1.05390 0.97607 1.20694 0.95214 0.95440 0.91851 1.19695 1.09769 1.11446 0.88219 1.21381 0.75733 0.76635 0.90722 1.90716 1.59061 1.54648 1.37425 1.86607 1.59840 1.50383 1.32667 1.22925 0.98654 0.99837 0.83940 1.18080 0.85230 0.86374 0.92514 1.20141 1.32858 0.94128 0.97704 0.88006 1.26074 0.93446 0.97834 0.97300 1.69776 1.34856 1.08065 1.28649 0.86161 0.78885 0.79341 0.81807 1.18072 1.19975 1.19973 1.20620 1.08292 1.06946 0.90231 0.93586 0.92069 0.93136 0.89496 0.91660 0.84600 0.83976 0.93553 0.92738 0.77433 0.77565 0.85073 0.88303 0.93004 0.92971 0.89676 0.91098 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.44 37.16 0.35 -1.53 16 2 C -0.13 -1.76 4.74 -26.73 -0.13 -1.89 16 3 C 0.37 5.03 0.65 -191.09 -0.12 4.90 16 4 N -0.83 -11.56 6.33 -1.79 -0.01 -11.57 16 5 C 0.04 0.41 5.71 37.16 0.21 0.62 16 6 O -0.56 -5.37 12.47 -35.23 -0.44 -5.81 16 7 N -0.74 -12.38 4.69 -48.85 -0.23 -12.61 16 8 C 0.25 5.32 6.34 -84.02 -0.53 4.79 16 9 C -0.28 -5.93 7.53 -39.30 -0.30 -6.23 16 10 C -0.01 -0.29 9.60 -39.25 -0.38 -0.67 16 11 C -0.29 -7.43 6.07 -102.50 -0.62 -8.05 16 12 C 0.50 12.77 7.86 34.29 0.27 13.04 16 13 O -0.53 -14.45 13.54 -19.31 -0.26 -14.71 16 14 O -0.38 -8.14 9.84 -40.88 -0.40 -8.54 16 15 C 0.04 0.69 10.57 101.05 1.07 1.76 16 16 C 0.18 4.95 5.66 -104.68 -0.59 4.36 16 17 C -0.42 -11.67 7.84 -37.80 -0.30 -11.96 16 18 H 0.10 2.95 5.96 -52.49 -0.31 2.64 16 19 C 0.07 1.84 5.27 -17.30 -0.09 1.75 16 20 N -0.79 -20.19 11.07 55.56 0.62 -19.58 16 21 Si 0.91 19.70 29.57 -169.99 -5.03 14.68 16 22 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 C -0.24 -5.85 8.45 -38.65 -0.33 -6.18 16 26 H 0.05 0.53 6.32 -51.93 -0.33 0.20 16 27 H 0.06 0.90 7.76 -51.93 -0.40 0.49 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 1.43 5.67 -51.92 -0.29 1.14 16 30 H 0.06 0.87 7.60 -51.93 -0.39 0.47 16 31 H 0.34 4.70 9.04 -39.29 -0.36 4.35 16 32 H 0.35 4.23 8.67 -39.29 -0.34 3.89 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.56 6.61 -51.93 -0.34 0.21 16 35 H 0.38 1.96 9.12 45.56 0.42 2.37 16 36 H 0.39 6.17 8.47 -40.82 -0.35 5.82 16 37 H 0.13 2.56 4.31 -52.49 -0.23 2.33 16 38 H 0.10 2.09 7.62 -52.49 -0.40 1.69 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.09 8.14 -51.92 -0.42 0.66 16 42 H 0.28 6.47 8.29 -40.82 -0.34 6.14 16 43 H 0.12 2.94 6.53 -52.49 -0.34 2.60 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -31.09 347.24 -6.93 -38.02 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -4.92 Total: 20.18 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.49 Total: -5.28 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.37 Total: -43.76 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.10 Total: -29.06 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.09 -6.93 -38.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170862194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.029 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds