Wall clock time and date at job start Tue Mar 31 2020 09:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47456 * 2 1 4 4 N 1.46901 * 109.47267 * 178.62171 * 3 2 1 5 5 C 1.53001 * 109.47014 * 58.62473 * 3 2 1 6 6 O 1.42903 * 109.46944 * 54.87132 * 5 3 2 7 7 N 1.46498 * 109.47231 * 298.62762 * 3 2 1 8 8 C 1.39153 * 119.99519 * 292.31207 * 7 3 2 9 9 C 1.39416 * 119.50379 * 358.53930 * 8 7 3 10 10 C 1.37799 * 121.19563 * 180.29987 * 9 8 7 11 11 C 1.39571 * 120.14211 * 359.44573 * 10 9 8 12 12 C 1.47010 * 120.48753 * 180.27790 * 11 10 9 13 13 O 1.21563 * 119.99980 * 184.28104 * 12 11 10 14 14 O 1.34842 * 119.99826 * 4.27152 * 12 11 10 15 15 C 1.45199 * 116.99483 * 180.02562 * 14 12 11 16 16 C 1.46541 * 119.02713 * 0.54094 * 11 10 9 17 17 C 1.40938 * 120.56753 * 179.71144 * 16 11 10 18 18 H 1.08000 * 119.99917 * 33.25325 * 17 16 11 19 19 C 1.40250 * 120.00022 * 213.24781 * 17 16 11 20 20 N 1.30639 * 119.99770 * 8.81712 * 19 17 16 21 21 Si 1.86802 * 120.00164 * 188.81349 * 19 17 16 22 22 H 1.48503 * 109.47086 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46944 * 120.00326 * 21 19 17 24 24 H 1.48495 * 109.47026 * 240.00114 * 21 19 17 25 25 C 1.38443 * 119.49729 * 178.55931 * 8 7 3 26 26 H 1.09006 * 109.46808 * 303.69558 * 1 2 3 27 27 H 1.09004 * 109.47118 * 63.69141 * 1 2 3 28 28 H 1.08998 * 109.47489 * 183.69909 * 1 2 3 29 29 H 1.09009 * 109.46875 * 240.00182 * 2 1 3 30 30 H 1.08996 * 109.47226 * 120.00305 * 2 1 3 31 31 H 1.00897 * 110.99787 * 179.97438 * 4 3 2 32 32 H 1.00894 * 111.00143 * 303.96072 * 4 3 2 33 33 H 1.08994 * 109.47193 * 174.87074 * 5 3 2 34 34 H 1.08997 * 109.47287 * 294.87460 * 5 3 2 35 35 H 0.96702 * 113.99678 * 180.02562 * 6 5 3 36 36 H 0.96997 * 120.00237 * 112.31735 * 7 3 2 37 37 H 1.08000 * 119.40063 * 0.02562 * 9 8 7 38 38 H 1.08002 * 119.92332 * 179.72657 * 10 9 8 39 39 H 1.09006 * 109.47118 * 299.99452 * 15 14 12 40 40 H 1.08997 * 109.47461 * 60.00130 * 15 14 12 41 41 H 1.09011 * 109.46694 * 180.02562 * 15 14 12 42 42 H 0.97005 * 119.99704 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.11307 * 359.95522 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5087 1.4425 0.0333 5 6 1.5020 2.1736 1.2316 6 8 1.8510 1.4434 2.4093 7 7 1.5790 2.1235 -1.2123 8 6 2.0700 1.7383 -2.4561 9 6 3.0231 0.7238 -2.5338 10 6 3.5374 0.3191 -3.7465 11 6 3.0987 0.9174 -4.9287 12 6 3.6378 0.4873 -6.2270 13 8 3.3082 1.0661 -7.2438 14 8 4.4980 -0.5492 -6.2898 15 6 4.9903 -0.9184 -7.6050 16 6 2.0970 1.9845 -4.8563 17 6 1.6356 2.6151 -6.0292 18 1 1.5543 2.0534 -6.9481 19 6 1.2818 3.9720 -6.0032 20 7 1.5399 4.6941 -4.9455 21 14 0.4418 4.7469 -7.4808 22 1 0.2629 3.7232 -8.5417 23 1 -0.8852 5.2756 -7.0749 24 1 1.2794 5.8576 -8.0003 25 6 1.6048 2.3686 -3.5976 26 1 -0.3633 0.5702 0.8551 27 1 -0.3633 0.4555 -0.9213 28 1 -0.3634 -1.0255 0.0663 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8703 2.3845 0.0335 32 1 3.8524 0.9227 0.8268 33 1 1.9374 3.1717 1.2806 34 1 0.4172 2.2534 1.1617 35 1 1.5409 1.8496 3.2303 36 1 0.9316 2.8429 -1.1481 37 1 3.3678 0.2496 -1.6268 38 1 4.2783 -0.4659 -3.7824 39 1 4.1507 -1.1955 -8.2426 40 1 5.5179 -0.0727 -8.0461 41 1 5.6715 -1.7645 -7.5136 42 1 1.2955 5.6327 -4.9276 43 1 0.8660 3.1526 -3.5208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170862194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:06 Heat of formation + Delta-G solvation = -123.067445 kcal Electronic energy + Delta-G solvation = -26217.974533 eV Core-core repulsion = 22455.373865 eV Total energy + Delta-G solvation = -3762.600669 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91961 -40.36832 -38.50499 -37.03626 -36.47909 -35.35162 -33.56390 -32.45596 -31.38970 -30.16397 -28.41610 -27.52538 -27.02295 -24.94355 -23.64279 -22.75294 -21.36225 -20.51754 -19.03791 -18.39620 -18.24097 -17.80251 -17.27074 -16.91944 -16.82710 -16.57180 -16.39390 -15.69486 -15.25004 -14.95573 -14.88542 -14.41643 -14.14115 -14.08824 -14.03512 -13.84066 -13.39616 -13.17263 -12.98747 -12.91890 -12.82153 -12.61665 -12.51655 -12.39487 -12.02732 -11.92044 -11.66451 -11.50136 -11.29813 -11.18144 -10.99947 -10.65344 -10.52899 -9.40109 -9.12893 -8.66318 -7.95347 -6.34725 0.57613 1.15818 1.35119 1.50288 1.58409 2.23208 2.25052 2.27509 2.47959 2.86148 3.35574 3.74690 3.80944 3.97683 4.04198 4.40177 4.41442 4.44686 4.48411 4.50901 4.57427 4.60818 4.69587 4.82421 4.98453 5.04389 5.16884 5.20245 5.23966 5.34680 5.40100 5.44544 5.55466 5.71213 5.88821 6.08038 6.16536 6.20279 6.27467 6.53478 6.70154 6.81618 6.92530 6.93878 7.07260 7.25854 7.41955 8.32618 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.004923 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.284703 B = 5686.191407 C = 7387.072355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.358 3.642 4 N -0.845 5.845 5 C 0.051 3.949 6 O -0.571 6.571 7 N -0.730 5.730 8 C 0.269 3.731 9 C -0.267 4.267 10 C -0.014 4.014 11 C -0.322 4.322 12 C 0.500 3.500 13 O -0.560 6.560 14 O -0.376 6.376 15 C 0.033 3.967 16 C 0.156 3.844 17 C -0.459 4.459 18 H 0.076 0.924 19 C 0.037 3.963 20 N -0.810 5.810 21 Si 0.977 3.023 22 H -0.272 1.272 23 H -0.253 1.253 24 H -0.267 1.267 25 C -0.260 4.260 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.341 0.659 32 H 0.358 0.642 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.401 0.599 36 H 0.396 0.604 37 H 0.156 0.844 38 H 0.118 0.882 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.133 0.867 42 H 0.288 0.712 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.542 -4.047 13.728 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.180 3.820 4 N -0.379 5.379 5 C -0.030 4.030 6 O -0.379 6.379 7 N -0.363 5.363 8 C 0.166 3.834 9 C -0.289 4.289 10 C -0.034 4.034 11 C -0.326 4.326 12 C 0.353 3.647 13 O -0.455 6.455 14 O -0.294 6.294 15 C -0.060 4.060 16 C 0.152 3.848 17 C -0.488 4.488 18 H 0.094 0.906 19 C -0.179 4.179 20 N -0.436 5.436 21 Si 0.799 3.201 22 H -0.196 1.196 23 H -0.177 1.177 24 H -0.192 1.192 25 C -0.284 4.284 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.155 0.845 32 H 0.174 0.826 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.251 0.749 36 H 0.231 0.769 37 H 0.173 0.827 38 H 0.136 0.864 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.152 0.848 42 H 0.099 0.901 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.289 -4.572 12.571 13.380 hybrid contribution -0.761 1.791 -0.002 1.946 sum -1.050 -2.782 12.569 12.916 Atomic orbital electron populations 1.21685 0.95070 1.01867 1.01291 1.21808 0.96537 0.95353 1.02448 1.20190 0.86847 0.92209 0.82759 1.58820 1.07395 1.21151 1.50558 1.22782 1.00011 0.94102 0.86092 1.86359 1.81648 1.53257 1.16595 1.44413 1.48862 1.40746 1.02290 1.17614 0.90355 0.91055 0.84377 1.20864 1.05466 1.04644 0.97922 1.20936 0.95399 0.95559 0.91456 1.19987 1.10713 1.12300 0.89621 1.21440 0.75908 0.77019 0.90289 1.90685 1.60393 1.56008 1.38377 1.86553 1.58769 1.48773 1.35318 1.23338 0.99372 1.01393 0.81920 1.18453 0.85814 0.87170 0.93400 1.20098 1.36009 0.95471 0.97236 0.90592 1.26724 0.93638 0.97491 1.00080 1.69785 1.35212 1.08667 1.29892 0.85240 0.78818 0.78022 0.78069 1.19616 1.17672 1.19155 1.20509 1.09202 1.07926 0.90795 0.91642 0.94227 0.92290 0.92146 0.90318 0.84454 0.82622 0.92830 0.91854 0.74872 0.76882 0.82731 0.86436 0.93041 0.93193 0.84848 0.90128 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.44 71.98 0.68 -2.67 16 2 C -0.12 -3.13 4.74 30.59 0.15 -2.99 16 3 C 0.36 8.95 0.65 88.03 0.06 9.00 16 4 N -0.84 -21.22 6.33 -159.59 -1.01 -22.23 16 5 C 0.05 0.92 5.71 71.98 0.41 1.33 16 6 O -0.57 -8.55 12.47 -148.98 -1.86 -10.41 16 7 N -0.73 -23.37 4.69 -308.47 -1.45 -24.82 16 8 C 0.27 11.43 6.34 38.31 0.24 11.67 16 9 C -0.27 -11.18 7.53 22.45 0.17 -11.02 16 10 C -0.01 -0.66 9.60 22.49 0.22 -0.44 16 11 C -0.32 -17.24 6.07 -18.49 -0.11 -17.35 16 12 C 0.50 26.30 7.86 70.12 0.55 26.85 16 13 O -0.56 -32.31 13.54 19.63 0.27 -32.04 16 14 O -0.38 -16.30 9.84 -57.55 -0.57 -16.87 16 15 C 0.03 1.09 10.57 113.37 1.20 2.29 16 16 C 0.16 8.85 5.66 -19.90 -0.11 8.74 16 17 C -0.46 -26.98 7.84 23.42 0.18 -26.80 16 18 H 0.08 4.73 5.96 -2.91 -0.02 4.72 16 19 C 0.04 1.94 5.27 85.36 0.45 2.39 16 20 N -0.81 -42.52 11.07 21.88 0.24 -42.28 16 21 Si 0.98 41.62 29.57 68.60 2.03 43.65 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 25 C -0.26 -13.23 8.45 22.87 0.19 -13.04 16 26 H 0.06 1.29 6.32 -2.38 -0.02 1.28 16 27 H 0.04 1.10 7.76 -2.38 -0.02 1.08 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.88 5.67 -2.38 -0.01 1.87 16 30 H 0.08 1.84 7.60 -2.39 -0.02 1.82 16 31 H 0.34 8.60 9.04 -89.70 -0.81 7.79 16 32 H 0.36 7.64 8.67 -89.70 -0.78 6.86 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 1.06 6.61 -2.39 -0.02 1.04 16 35 H 0.40 2.43 9.12 -74.06 -0.68 1.76 16 36 H 0.40 12.00 8.47 -92.71 -0.79 11.22 16 37 H 0.16 5.72 4.31 -2.91 -0.01 5.71 16 38 H 0.12 4.86 7.62 -2.91 -0.02 4.84 16 39 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.13 3.05 8.14 -2.38 -0.02 3.03 16 42 H 0.29 13.54 8.29 -92.70 -0.77 12.77 16 43 H 0.10 5.47 6.53 -2.91 -0.02 5.45 16 Total: -1.00 -70.96 347.24 -0.02 -70.98 By element: Atomic # 1 Polarization: 48.00 SS G_CDS: -1.95 Total: 46.05 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 4.27 Total: -12.02 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -2.21 Total: -89.33 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: -2.16 Total: -59.32 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -70.96 -0.02 -70.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170862194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.088 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds