Wall clock time and date at job start Tue Mar 31 2020 10:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.39039 * 2 1 4 4 C 1.54388 * 110.33970 * 237.76493 * 2 1 3 5 5 N 1.48146 * 104.61575 * 217.26404 * 4 2 1 6 6 C 1.34776 * 127.83797 * 219.32646 * 5 4 2 7 7 O 1.21281 * 119.99869 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99987 * 0.02621 * 6 5 4 9 9 C 1.53009 * 109.46912 * 179.97438 * 8 6 5 10 10 F 1.39905 * 109.47057 * 60.00291 * 9 8 6 11 11 F 1.39896 * 109.46858 * 180.02562 * 9 8 6 12 12 F 1.39891 * 109.47220 * 299.99907 * 9 8 6 13 13 C 1.48142 * 104.32318 * 39.58929 * 5 4 2 14 14 C 1.54285 * 110.33885 * 122.23198 * 2 1 3 15 15 C 1.52997 * 110.34541 * 359.97438 * 14 2 1 16 16 C 1.53003 * 110.34059 * 237.73938 * 14 2 1 17 17 N 1.46504 * 109.46998 * 180.02562 * 16 14 2 18 18 C 1.36939 * 119.99873 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99780 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99680 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00239 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99737 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47144 * 89.98997 * 22 20 18 24 24 H 1.48494 * 109.46838 * 209.99222 * 22 20 18 25 25 H 1.48500 * 109.46690 * 329.99402 * 22 20 18 26 26 H 1.08998 * 109.47601 * 180.77742 * 1 2 3 27 27 H 1.09002 * 109.47052 * 300.78414 * 1 2 3 28 28 H 1.09011 * 109.46763 * 60.77594 * 1 2 3 29 29 H 1.09001 * 110.40633 * 98.48802 * 4 2 1 30 30 H 1.08997 * 110.51158 * 336.09897 * 4 2 1 31 31 H 1.08997 * 109.47006 * 299.99700 * 8 6 5 32 32 H 1.08996 * 109.47375 * 60.00227 * 8 6 5 33 33 H 1.09002 * 110.40643 * 79.19769 * 13 5 4 34 34 H 1.09004 * 110.41038 * 201.62402 * 13 5 4 35 35 H 1.09000 * 109.47374 * 59.99673 * 15 14 2 36 36 H 1.09003 * 109.47337 * 180.02562 * 15 14 2 37 37 H 1.09000 * 109.46819 * 299.99959 * 15 14 2 38 38 H 1.08996 * 109.46881 * 299.99850 * 16 14 2 39 39 H 1.08992 * 109.47157 * 60.00351 * 16 14 2 40 40 H 0.96997 * 119.99986 * 0.02562 * 17 16 14 41 41 H 0.97003 * 119.99756 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0666 -0.7722 -1.2245 5 7 3.2663 -1.4818 -0.7226 6 6 4.4407 -1.6707 -1.3563 7 8 5.3350 -2.2788 -0.8074 8 6 4.6425 -1.1263 -2.7470 9 6 6.0509 -1.4759 -3.2321 10 9 6.2069 -2.8662 -3.2483 11 9 6.2385 -0.9701 -4.5228 12 9 6.9952 -0.9108 -2.3685 13 6 2.8800 -1.9423 0.6314 14 6 2.0663 -0.7716 1.2237 15 6 0.9061 -1.3030 2.0677 16 6 2.9691 0.1306 2.0674 17 7 3.4676 -0.6203 3.2224 18 6 4.2998 -0.0144 4.1256 19 1 4.5889 1.0167 3.9862 20 6 4.7725 -0.7261 5.2197 21 7 4.4205 -1.9829 5.3892 22 14 5.9071 0.1006 6.4521 23 1 5.0971 0.7305 7.5256 24 1 6.8145 -0.9133 7.0469 25 1 6.7115 1.1417 5.7634 26 1 -0.3634 -1.0275 0.0139 27 1 -0.3633 0.5260 0.8829 28 1 -0.3633 0.5018 -0.8970 29 1 2.3401 -0.0796 -2.0205 30 1 1.3243 -1.4861 -1.5812 31 1 3.9064 -1.5664 -3.4198 32 1 4.5215 -0.0432 -2.7343 33 1 2.2638 -2.8390 0.5665 34 1 3.7671 -2.1327 1.2357 35 1 0.2951 -1.9742 1.4641 36 1 1.3004 -1.8446 2.9276 37 1 0.2960 -0.4683 2.4131 38 1 3.8111 0.4688 1.4636 39 1 2.3998 0.9935 2.4129 40 1 3.2082 -1.5465 3.3474 41 1 4.7506 -2.4801 6.1540 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180800298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:53 Heat of formation + Delta-G solvation = -175.358922 kcal Electronic energy + Delta-G solvation = -26876.174265 eV Core-core repulsion = 22569.449328 eV Total energy + Delta-G solvation = -4306.724937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.13557 -47.68955 -47.52724 -40.39814 -38.41542 -34.83539 -33.40000 -31.99676 -31.52474 -29.61338 -27.16819 -25.96959 -25.66181 -23.85981 -23.21795 -21.21723 -19.77070 -18.70345 -18.59861 -18.43639 -17.43249 -17.28065 -16.49400 -16.00337 -15.37259 -14.94255 -14.66530 -14.50951 -14.39823 -14.17508 -13.97872 -13.87563 -13.71438 -13.69634 -13.56328 -13.10836 -12.94422 -12.77297 -12.56480 -12.13105 -12.09102 -11.93951 -11.59171 -11.47898 -11.26167 -10.97850 -10.80863 -10.53703 -10.35936 -10.20613 -10.00568 -9.91422 -9.58731 -8.85172 -8.71153 -6.88846 -5.73239 -3.01487 2.37487 2.47231 2.91399 3.46707 3.52188 3.54013 3.57926 3.86919 3.91147 4.42416 4.47938 4.60677 4.72562 4.80640 4.82717 4.87524 5.19951 5.29865 5.30579 5.43636 5.51989 5.63225 5.66771 5.79962 5.86591 5.96895 6.07343 6.12942 6.17852 6.22209 6.39524 6.49644 6.67257 6.77136 6.84773 7.47320 7.73362 8.01063 8.45632 9.57118 10.13454 10.47930 11.49702 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.004495 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.583842 B = 6227.783737 C = 7840.521099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.083 0.917 4 C 0.101 3.899 5 N -0.615 5.615 6 C 0.535 3.465 7 O -0.512 6.512 8 C -0.191 4.191 9 C 0.472 3.528 10 F -0.173 7.173 11 F -0.185 7.185 12 F -0.170 7.170 13 C 0.114 3.886 14 C -0.076 4.076 15 C -0.134 4.134 16 C 0.169 3.831 17 N -0.729 5.729 18 C -0.239 4.239 19 H 0.068 0.932 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.017 0.983 39 H 0.021 0.979 40 H 0.384 0.616 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.498 2.754 -20.285 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.022 4.022 5 N -0.349 5.349 6 C 0.321 3.679 7 O -0.387 6.387 8 C -0.232 4.232 9 C 0.417 3.583 10 F -0.155 7.155 11 F -0.167 7.167 12 F -0.151 7.151 13 C -0.007 4.007 14 C -0.077 4.077 15 C -0.191 4.191 16 C 0.041 3.959 17 N -0.374 5.374 18 C -0.370 4.370 19 H 0.086 0.914 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.035 0.965 39 H 0.038 0.962 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.743 2.502 -19.966 21.561 hybrid contribution 0.709 0.207 0.607 0.956 sum -7.033 2.709 -19.359 20.774 Atomic orbital electron populations 1.21893 0.94004 1.02246 1.01770 1.22149 0.96183 0.99769 0.93699 0.89832 1.22594 0.86950 0.95502 0.97120 1.48776 1.12299 1.55565 1.18280 1.19232 0.81641 0.80873 0.86190 1.90886 1.40363 1.40683 1.66747 1.22936 0.94622 1.07146 0.98495 1.19715 0.88509 0.75161 0.74881 1.93225 1.96404 1.29695 1.96145 1.93186 1.96169 1.87331 1.40001 1.93251 1.67627 1.84640 1.69605 1.22615 1.00624 0.95888 0.81607 1.21721 0.96032 0.95394 0.94569 1.21869 0.96529 1.00939 0.99804 1.20651 0.93665 0.92946 0.88650 1.42385 1.57309 1.12860 1.24843 1.19187 1.20503 0.95710 1.01626 0.91352 1.24707 1.01019 0.96045 0.98991 1.69646 1.49053 1.08413 1.31007 0.86204 0.80437 0.78189 0.81457 1.21778 1.21764 1.20815 0.91998 0.91669 0.93024 0.90630 0.90632 0.84711 0.84581 0.91271 0.88019 0.93057 0.91205 0.92102 0.96532 0.96162 0.78095 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 7.93 37.16 0.29 -0.88 16 2 C -0.10 -1.03 3.31 -89.22 -0.30 -1.33 16 3 H 0.08 0.90 7.71 -51.93 -0.40 0.50 16 4 C 0.10 0.91 6.46 -2.41 -0.02 0.90 16 5 N -0.62 -8.22 3.32 -169.31 -0.56 -8.78 16 6 C 0.53 7.83 7.68 -10.99 -0.08 7.75 16 7 O -0.51 -10.20 15.10 5.56 0.08 -10.11 16 8 C -0.19 -1.81 4.73 -27.88 -0.13 -1.95 16 9 C 0.47 5.75 2.89 37.16 0.11 5.85 16 10 F -0.17 -2.45 16.40 2.25 0.04 -2.41 16 11 F -0.19 -1.97 17.32 2.25 0.04 -1.93 16 12 F -0.17 -2.57 16.40 2.25 0.04 -2.54 16 13 C 0.11 1.80 5.91 -2.41 -0.01 1.79 16 14 C -0.08 -1.11 0.73 -153.11 -0.11 -1.22 16 15 C -0.13 -1.87 7.11 37.16 0.26 -1.60 16 16 C 0.17 3.31 4.95 -4.04 -0.02 3.29 16 17 N -0.73 -18.21 4.79 -59.91 -0.29 -18.50 16 18 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 22 Si 0.91 22.92 29.55 -169.99 -5.02 17.89 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 H 0.06 0.49 6.61 -51.93 -0.34 0.15 16 27 H 0.06 0.59 6.98 -51.93 -0.36 0.22 16 28 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.08 0.48 7.31 -51.93 -0.38 0.10 16 30 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 31 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.14 0.92 7.95 -51.93 -0.41 0.51 16 33 H 0.07 0.98 7.83 -51.93 -0.41 0.58 16 34 H 0.10 2.10 6.94 -51.93 -0.36 1.74 16 35 H 0.05 0.58 6.68 -51.93 -0.35 0.23 16 36 H 0.07 1.20 6.75 -51.93 -0.35 0.85 16 37 H 0.06 0.81 6.89 -51.93 -0.36 0.45 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.38 9.99 5.99 -40.82 -0.24 9.75 16 41 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -34.43 338.64 -5.71 -40.14 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.61 Total: 3.64 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -0.25 Total: 5.23 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.12 Total: -55.01 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 0.11 Total: -6.88 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.43 -5.71 -40.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180800298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.218 kcal (2) G-P(sol) polarization free energy of solvation -34.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds