Wall clock time and date at job start Tue Mar 31 2020 10:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.39039 * 2 1 4 4 C 1.54388 * 110.33970 * 237.76493 * 2 1 3 5 5 N 1.48146 * 104.61575 * 217.26404 * 4 2 1 6 6 C 1.34776 * 127.83797 * 219.32646 * 5 4 2 7 7 O 1.21281 * 119.99869 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99987 * 0.02621 * 6 5 4 9 9 C 1.53009 * 109.46912 * 179.97438 * 8 6 5 10 10 F 1.39905 * 109.47057 * 60.00291 * 9 8 6 11 11 F 1.39896 * 109.46858 * 180.02562 * 9 8 6 12 12 F 1.39891 * 109.47220 * 299.99907 * 9 8 6 13 13 C 1.48142 * 104.32318 * 39.58929 * 5 4 2 14 14 C 1.54285 * 110.33885 * 122.23198 * 2 1 3 15 15 C 1.52997 * 110.34541 * 359.97438 * 14 2 1 16 16 C 1.53003 * 110.34059 * 237.73938 * 14 2 1 17 17 N 1.46504 * 109.46998 * 180.02562 * 16 14 2 18 18 C 1.36939 * 119.99873 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99780 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99680 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00239 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99737 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47144 * 89.98997 * 22 20 18 24 24 H 1.48494 * 109.46838 * 209.99222 * 22 20 18 25 25 H 1.48500 * 109.46690 * 329.99402 * 22 20 18 26 26 H 1.08998 * 109.47601 * 180.77742 * 1 2 3 27 27 H 1.09002 * 109.47052 * 300.78414 * 1 2 3 28 28 H 1.09011 * 109.46763 * 60.77594 * 1 2 3 29 29 H 1.09001 * 110.40633 * 98.48802 * 4 2 1 30 30 H 1.08997 * 110.51158 * 336.09897 * 4 2 1 31 31 H 1.08997 * 109.47006 * 299.99700 * 8 6 5 32 32 H 1.08996 * 109.47375 * 60.00227 * 8 6 5 33 33 H 1.09002 * 110.40643 * 79.19769 * 13 5 4 34 34 H 1.09004 * 110.41038 * 201.62402 * 13 5 4 35 35 H 1.09000 * 109.47374 * 59.99673 * 15 14 2 36 36 H 1.09003 * 109.47337 * 180.02562 * 15 14 2 37 37 H 1.09000 * 109.46819 * 299.99959 * 15 14 2 38 38 H 1.08996 * 109.46881 * 299.99850 * 16 14 2 39 39 H 1.08992 * 109.47157 * 60.00351 * 16 14 2 40 40 H 0.96997 * 119.99986 * 0.02562 * 17 16 14 41 41 H 0.97003 * 119.99756 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0666 -0.7722 -1.2245 5 7 3.2663 -1.4818 -0.7226 6 6 4.4407 -1.6707 -1.3563 7 8 5.3350 -2.2788 -0.8074 8 6 4.6425 -1.1263 -2.7470 9 6 6.0509 -1.4759 -3.2321 10 9 6.2069 -2.8662 -3.2483 11 9 6.2385 -0.9701 -4.5228 12 9 6.9952 -0.9108 -2.3685 13 6 2.8800 -1.9423 0.6314 14 6 2.0663 -0.7716 1.2237 15 6 0.9061 -1.3030 2.0677 16 6 2.9691 0.1306 2.0674 17 7 3.4676 -0.6203 3.2224 18 6 4.2998 -0.0144 4.1256 19 1 4.5889 1.0167 3.9862 20 6 4.7725 -0.7261 5.2197 21 7 4.4205 -1.9829 5.3892 22 14 5.9071 0.1006 6.4521 23 1 5.0971 0.7305 7.5256 24 1 6.8145 -0.9133 7.0469 25 1 6.7115 1.1417 5.7634 26 1 -0.3634 -1.0275 0.0139 27 1 -0.3633 0.5260 0.8829 28 1 -0.3633 0.5018 -0.8970 29 1 2.3401 -0.0796 -2.0205 30 1 1.3243 -1.4861 -1.5812 31 1 3.9064 -1.5664 -3.4198 32 1 4.5215 -0.0432 -2.7343 33 1 2.2638 -2.8390 0.5665 34 1 3.7671 -2.1327 1.2357 35 1 0.2951 -1.9742 1.4641 36 1 1.3004 -1.8446 2.9276 37 1 0.2960 -0.4683 2.4131 38 1 3.8111 0.4688 1.4636 39 1 2.3998 0.9935 2.4129 40 1 3.2082 -1.5465 3.3474 41 1 4.7506 -2.4801 6.1540 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180800298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:53 Heat of formation + Delta-G solvation = -199.197114 kcal Electronic energy + Delta-G solvation = -26877.207967 eV Core-core repulsion = 22569.449328 eV Total energy + Delta-G solvation = -4307.758639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.10277 -48.61825 -48.57966 -41.48557 -39.59691 -36.51190 -34.77256 -33.15385 -32.85979 -31.11592 -28.23676 -27.47045 -26.66705 -25.30636 -24.58152 -22.45502 -20.78995 -19.75367 -19.69021 -19.57613 -19.08632 -18.31804 -17.70786 -17.04145 -16.70894 -16.36245 -16.03623 -15.65650 -15.46124 -15.31450 -15.22034 -14.98330 -14.88469 -14.75135 -14.70046 -14.54541 -14.39273 -13.94543 -13.45651 -13.23027 -13.07327 -13.02167 -12.90149 -12.85232 -12.61751 -12.59556 -12.28516 -12.09879 -11.96412 -11.59559 -11.26152 -11.15939 -11.14571 -10.95845 -9.80485 -9.00058 -7.97494 -5.25055 1.40563 1.42601 1.45307 1.46144 1.53213 1.95973 2.53294 2.69237 2.97962 3.03461 3.35766 3.48302 3.60034 3.71843 3.81812 4.12107 4.18137 4.18455 4.26799 4.36789 4.42618 4.60325 4.68459 4.73790 4.83862 4.88560 4.92086 5.03057 5.06561 5.16076 5.22474 5.33663 5.43059 5.48079 5.49819 5.70421 6.25327 6.45600 6.94914 7.31833 8.09098 8.31514 9.26112 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.004495 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.583842 B = 6227.783737 C = 7840.521099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.083 0.917 4 C 0.100 3.900 5 N -0.614 5.614 6 C 0.522 3.478 7 O -0.582 6.582 8 C -0.173 4.173 9 C 0.464 3.536 10 F -0.190 7.190 11 F -0.174 7.174 12 F -0.194 7.194 13 C 0.115 3.885 14 C -0.069 4.069 15 C -0.127 4.127 16 C 0.168 3.832 17 N -0.740 5.740 18 C -0.246 4.246 19 H 0.070 0.930 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.281 1.281 24 H -0.296 1.296 25 H -0.274 1.274 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.183 0.817 32 H 0.173 0.827 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.068 0.932 38 H 0.000 1.000 39 H 0.025 0.975 40 H 0.375 0.625 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.824 4.455 -22.971 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.101 0.899 4 C -0.021 4.021 5 N -0.347 5.347 6 C 0.311 3.689 7 O -0.462 6.462 8 C -0.212 4.212 9 C 0.410 3.590 10 F -0.172 7.172 11 F -0.155 7.155 12 F -0.176 7.176 13 C -0.008 4.008 14 C -0.071 4.071 15 C -0.184 4.184 16 C 0.041 3.959 17 N -0.383 5.383 18 C -0.378 4.378 19 H 0.088 0.912 20 C -0.266 4.266 21 N -0.618 5.618 22 Si 0.800 3.200 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.199 1.199 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.135 0.865 30 H 0.124 0.876 31 H 0.200 0.800 32 H 0.191 0.809 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.017 0.983 39 H 0.042 0.958 40 H 0.209 0.791 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.123 4.263 -22.702 25.219 hybrid contribution 1.422 -0.294 1.395 2.013 sum -8.701 3.970 -21.307 23.355 Atomic orbital electron populations 1.21870 0.91640 1.03070 1.02859 1.22153 0.97996 0.99168 0.91774 0.89850 1.22985 0.85509 0.96457 0.97146 1.48899 1.13408 1.55185 1.17167 1.20175 0.80914 0.79957 0.87858 1.90858 1.42657 1.43865 1.68804 1.23004 0.93542 1.09321 0.95377 1.20185 0.89454 0.74343 0.75024 1.93191 1.96568 1.31174 1.96227 1.93205 1.96207 1.87035 1.39085 1.93202 1.68920 1.84917 1.70567 1.22399 0.98380 0.97273 0.82788 1.21625 0.95074 0.94646 0.95711 1.21821 0.96486 1.01382 0.98718 1.20803 0.93884 0.93725 0.87443 1.42588 1.57017 1.12835 1.25906 1.19593 1.20315 0.95860 1.02065 0.91179 1.25526 1.03128 0.96761 1.01182 1.69807 1.50621 1.09830 1.31587 0.85180 0.78475 0.77165 0.79206 1.20760 1.22302 1.19911 0.91230 0.92564 0.90107 0.86472 0.87612 0.79975 0.80939 0.89737 0.94134 0.89636 0.95351 0.91341 0.98257 0.95759 0.79126 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 7.93 71.98 0.57 -1.04 16 2 C -0.09 -1.58 3.31 -9.89 -0.03 -1.62 16 3 H 0.08 1.49 7.71 -2.39 -0.02 1.47 16 4 C 0.10 1.29 6.46 86.53 0.56 1.85 16 5 N -0.61 -15.27 3.32 -807.96 -2.68 -17.95 16 6 C 0.52 14.79 7.68 87.66 0.67 15.47 16 7 O -0.58 -24.26 15.10 -3.03 -0.05 -24.30 16 8 C -0.17 -2.67 4.73 29.85 0.14 -2.53 16 9 C 0.46 10.67 2.89 71.99 0.21 10.88 16 10 F -0.19 -5.35 16.40 44.97 0.74 -4.62 16 11 F -0.17 -3.29 17.32 44.97 0.78 -2.51 16 12 F -0.19 -5.96 16.40 44.97 0.74 -5.22 16 13 C 0.11 3.66 5.91 86.53 0.51 4.17 16 14 C -0.07 -1.98 0.73 -51.27 -0.04 -2.02 16 15 C -0.13 -3.43 7.11 71.98 0.51 -2.92 16 16 C 0.17 6.74 4.95 86.38 0.43 7.17 16 17 N -0.74 -38.74 4.79 -343.45 -1.64 -40.38 16 18 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 19 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 21 N -0.97 -61.44 13.06 21.65 0.28 -61.16 16 22 Si 0.97 48.25 29.55 68.60 2.03 50.28 16 23 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 25 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 26 H 0.07 0.74 6.61 -2.39 -0.02 0.73 16 27 H 0.06 0.79 6.98 -2.39 -0.02 0.78 16 28 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.12 0.64 7.31 -2.39 -0.02 0.62 16 30 H 0.11 0.86 7.87 -2.39 -0.02 0.84 16 31 H 0.18 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.17 1.44 7.95 -2.39 -0.02 1.42 16 33 H 0.08 2.39 7.83 -2.39 -0.02 2.37 16 34 H 0.04 1.80 6.94 -2.39 -0.02 1.79 16 35 H 0.08 1.71 6.68 -2.39 -0.02 1.70 16 36 H 0.03 0.99 6.75 -2.39 -0.02 0.98 16 37 H 0.07 1.73 6.89 -2.39 -0.02 1.71 16 38 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.38 20.80 5.99 -92.71 -0.55 20.24 16 41 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -82.98 338.64 5.54 -77.45 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.50 Total: 16.52 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 4.84 Total: 11.90 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -4.04 Total: -119.49 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.05 Total: -24.30 kcal Atomic # 9 Polarization: -14.60 SS G_CDS: 2.25 Total: -12.35 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -82.98 5.54 -77.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180800298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.752 kcal (2) G-P(sol) polarization free energy of solvation -82.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds