Wall clock time and date at job start Tue Mar 31 2020 10:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.49432 * 2 1 4 4 C 1.52760 * 109.59240 * 240.04824 * 2 1 3 5 5 N 1.46925 * 109.00575 * 185.53609 * 4 2 1 6 6 C 1.34777 * 120.62614 * 233.57902 * 5 4 2 7 7 O 1.21283 * 120.00463 * 359.72727 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.44850 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 F 1.39906 * 109.47024 * 59.99975 * 9 8 6 11 11 F 1.39898 * 109.47292 * 179.97438 * 9 8 6 12 12 F 1.39903 * 109.47014 * 300.00050 * 9 8 6 13 13 C 1.46927 * 118.74028 * 53.31181 * 5 4 2 14 14 C 1.53193 * 108.77386 * 306.63705 * 13 5 4 15 15 C 1.53043 * 109.49647 * 120.06122 * 2 1 3 16 16 H 1.09001 * 109.44529 * 61.33865 * 15 2 1 17 17 C 1.52988 * 109.46471 * 301.37210 * 15 2 1 18 18 N 1.46497 * 109.47395 * 174.92758 * 17 15 2 19 19 C 1.36943 * 120.00129 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99906 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99619 * 180.02562 * 19 18 17 22 22 N 1.31613 * 120.00306 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99545 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47413 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46989 * 120.00393 * 23 21 19 26 26 H 1.48503 * 109.47102 * 240.00290 * 23 21 19 27 27 H 1.09003 * 109.47253 * 299.93601 * 1 2 3 28 28 H 1.09007 * 109.47198 * 59.93505 * 1 2 3 29 29 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.50779 * 65.65007 * 4 2 1 31 31 H 1.09004 * 109.43086 * 305.37497 * 4 2 1 32 32 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 33 33 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 34 34 H 1.08997 * 109.58480 * 66.42812 * 13 5 4 35 35 H 1.08999 * 109.58556 * 186.85469 * 13 5 4 36 36 H 1.08996 * 109.49520 * 174.58628 * 14 13 5 37 37 H 1.09000 * 109.49888 * 294.65354 * 14 13 5 38 38 H 1.08999 * 109.47152 * 294.93163 * 17 15 2 39 39 H 1.09006 * 109.47175 * 54.92686 * 17 15 2 40 40 H 0.96994 * 119.99926 * 0.02562 * 18 17 15 41 41 H 0.96996 * 120.00053 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0422 -0.7185 -1.2470 5 7 3.5053 -0.8282 -1.1689 6 6 4.2818 -0.3844 -2.1771 7 8 3.7739 0.1066 -3.1629 8 6 5.7816 -0.4927 -2.0767 9 6 6.4204 0.0853 -3.3412 10 9 6.0577 1.4300 -3.4741 11 9 7.8127 -0.0146 -3.2478 12 9 5.9749 -0.6304 -4.4577 13 6 4.1059 -1.4254 0.0317 14 6 3.5708 -0.6939 1.2667 15 6 2.0407 -0.7227 1.2486 16 1 1.6971 -1.7570 1.2353 17 6 1.5030 -0.0230 2.4984 18 7 1.8910 -0.7835 3.6889 19 6 1.5196 -0.3457 4.9322 20 1 0.9403 0.5599 5.0350 21 6 1.8877 -1.0661 6.0602 22 7 2.5940 -2.1696 5.9349 23 14 1.3804 -0.4693 7.7561 24 1 0.5973 0.7856 7.6255 25 1 0.5471 -1.5058 8.4168 26 1 2.5932 -0.2137 8.5741 27 1 -0.3634 0.5128 0.8906 28 1 -0.3634 0.5149 -0.8895 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7652 -0.1496 -2.1345 31 1 1.6032 -1.7150 -1.2974 32 1 6.1288 0.0650 -1.2068 33 1 6.0642 -1.5402 -1.9732 34 1 3.8386 -2.4807 0.0876 35 1 5.1902 -1.3228 -0.0126 36 1 3.9334 -1.1883 2.1678 37 1 3.9159 0.3400 1.2550 38 1 1.9182 0.9830 2.5586 39 1 0.4159 0.0353 2.4428 40 1 2.4115 -1.5967 3.5966 41 1 2.8515 -2.6727 6.7232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184009110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:06 Heat of formation + Delta-G solvation = -190.036299 kcal Electronic energy + Delta-G solvation = -26319.061704 eV Core-core repulsion = 22011.700308 eV Total energy + Delta-G solvation = -4307.361396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.26407 -47.80636 -47.67658 -40.52371 -38.22769 -35.15003 -33.83373 -32.29261 -31.79638 -30.38932 -27.01107 -26.91081 -24.34117 -23.57254 -22.63157 -21.43006 -20.20958 -19.46575 -18.77994 -18.72402 -17.60586 -17.22026 -16.82369 -15.85176 -15.82105 -14.91133 -14.69788 -14.61079 -14.48269 -14.14016 -14.05147 -13.96085 -13.87052 -13.83239 -13.66870 -13.58458 -13.06119 -12.83968 -12.58321 -12.51780 -12.28361 -11.99179 -11.85751 -11.66923 -11.05409 -10.96192 -10.87518 -10.46384 -10.44877 -10.25638 -10.10540 -9.97248 -9.69052 -8.91874 -8.78945 -6.95472 -5.81842 -3.09744 2.21394 2.27523 2.77464 3.39819 3.45578 3.46177 3.47865 3.71327 3.78868 4.31397 4.54198 4.65143 4.69626 4.77208 4.84178 4.89292 4.98740 5.19238 5.32079 5.41406 5.52644 5.62096 5.69888 5.76713 5.81889 5.88628 5.99444 6.13099 6.20489 6.24581 6.33047 6.42248 6.53378 6.77141 6.86368 7.08703 7.66712 7.77164 8.37689 9.49115 10.06770 10.41234 11.41200 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.002980 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.825582 B = 9392.938950 C =10146.349855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.073 0.927 4 C 0.118 3.882 5 N -0.601 5.601 6 C 0.520 3.480 7 O -0.529 6.529 8 C -0.197 4.197 9 C 0.472 3.528 10 F -0.173 7.173 11 F -0.183 7.183 12 F -0.174 7.174 13 C 0.100 3.900 14 C -0.127 4.127 15 C -0.089 4.089 16 H 0.073 0.927 17 C 0.156 3.844 18 N -0.732 5.732 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.017 0.983 39 H 0.025 0.975 40 H 0.383 0.617 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.976 1.362 -17.730 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.092 0.908 4 C -0.003 4.003 5 N -0.333 5.333 6 C 0.306 3.694 7 O -0.405 6.405 8 C -0.238 4.238 9 C 0.418 3.582 10 F -0.155 7.155 11 F -0.165 7.165 12 F -0.156 7.156 13 C -0.022 4.022 14 C -0.165 4.165 15 C -0.108 4.108 16 H 0.092 0.908 17 C 0.029 3.971 18 N -0.376 5.376 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.217 0.783 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.635 1.736 -18.154 19.087 hybrid contribution 0.139 0.012 1.026 1.036 sum 5.775 1.748 -17.127 18.159 Atomic orbital electron populations 1.21829 0.94182 1.02269 1.02182 1.21393 0.96314 1.00007 0.94057 0.90829 1.21680 0.77920 1.01257 0.99481 1.48056 1.07383 1.60014 1.17868 1.19708 0.87648 0.78674 0.83408 1.90801 1.74854 1.44254 1.30640 1.23040 0.95970 1.07174 0.97626 1.19739 0.76005 0.76783 0.85691 1.93228 1.91366 1.34457 1.96408 1.93201 1.30882 1.96009 1.96381 1.93219 1.88985 1.77834 1.55521 1.22005 0.97837 0.98035 0.84305 1.21953 0.96282 1.01185 0.97109 1.21346 0.94568 1.00298 0.94620 0.90847 1.20752 0.96752 0.94048 0.85569 1.42379 1.65434 1.28959 1.00871 1.19274 1.27600 1.06213 0.83817 0.91221 1.24716 1.00919 0.97517 0.97817 1.69651 1.42849 1.17340 1.28468 0.86137 0.77683 0.77786 0.84717 1.20580 1.21881 1.21876 0.91212 0.92919 0.92445 0.88994 0.91154 0.84210 0.84358 0.90456 0.89995 0.88980 0.91612 0.96552 0.95738 0.78345 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.82 37.16 0.33 -1.34 16 2 C -0.10 -1.18 2.40 -90.72 -0.22 -1.40 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.33 5.69 -3.93 -0.02 1.31 16 5 N -0.60 -6.48 2.98 -173.03 -0.52 -6.99 16 6 C 0.52 5.99 7.47 -10.98 -0.08 5.91 16 7 O -0.53 -8.01 14.25 5.55 0.08 -7.93 16 8 C -0.20 -1.57 4.10 -27.88 -0.11 -1.69 16 9 C 0.47 4.87 2.89 37.16 0.11 4.98 16 10 F -0.17 -2.15 16.40 2.25 0.04 -2.12 16 11 F -0.18 -1.76 17.32 2.25 0.04 -1.72 16 12 F -0.17 -2.10 16.40 2.25 0.04 -2.06 16 13 C 0.10 0.96 6.35 -3.71 -0.02 0.93 16 14 C -0.13 -1.62 5.25 -26.61 -0.14 -1.76 16 15 C -0.09 -1.26 1.73 -90.58 -0.16 -1.42 16 16 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 17 C 0.16 2.90 5.41 -4.05 -0.02 2.88 16 18 N -0.73 -17.40 5.32 -59.91 -0.32 -17.72 16 19 C -0.24 -6.44 9.99 -15.06 -0.15 -6.59 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 23 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H 0.07 0.86 6.29 -51.93 -0.33 0.54 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.11 7.01 -51.93 -0.36 0.75 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.14 0.81 7.69 -51.92 -0.40 0.41 16 33 H 0.14 0.71 7.94 -51.93 -0.41 0.30 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.56 5.93 -51.93 -0.31 0.25 16 36 H 0.09 1.37 7.15 -51.93 -0.37 1.00 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 40 H 0.38 9.42 6.85 -40.82 -0.28 9.14 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -31.95 338.46 -6.14 -38.09 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.71 Total: 3.65 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.59 Total: 1.33 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.11 Total: -51.21 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.08 Total: -7.93 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.11 Total: -5.90 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.95 -6.14 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184009110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.951 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds